mRNA_P-littoralis_Contig85.164.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.164.1
Unique NamemRNA_P-littoralis_Contig85.164.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig85.164.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.680e-33
Identity = 86/241 (35.68%), Postives = 122/241 (50.62%), Query Frame = 2 
Query: 1103 FKASWGTLLHKAPMCLQIPTMHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMGGSNRGXXXXXXXXXXPMPPANLSQHFGGHGRQSGW--------------------------NGPGAPGH------YAPRPRS-----KQAKCSKCKNSGRTGADILHSYRQCPLVVCHKCKRAGHIEKYC 1714
            FKA+W TLL    +   I       +   I +I+  + EL R+  LD+SL EE+ F+ +   GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR +IVKELS ISKF+ G  R           PMPP   S HFGG+G                               N  G PG       +  R R+     + A C+ C+ +G++GADI HSY+ CP+V CHKC+  GH+ + C
Sbjct:  108 FKATWSTLL---TLISGITAFGRHDKHNRIQEIQRVLAELERVLALDTSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVKELSSISKFLTGPKRAA---------PMPPIAFSPHFGGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQYGPPGQXXXXRGFGKRGRNQGGAKRPAMCNTCRRAGKSGADIAHSYKVCPMVQCHKCRGYGHVLQNC 336
[Close]
BLAST of mRNA_P-littoralis_Contig85.164.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.390e-19
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2 
Query: 1163 MHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1432
            M   Q+ A + D+ + + ELLRL  LD SL  ERKF+A L+ G+ H++   Q   A +W H K+MSSSEEGQQVDRA ++KELS ++KF+
Sbjct:    1 MQMQQKAAILHDVSSMLAELLRLPMLDGSLSTERKFVATLDEGVKHALQGKQYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFI 90
[Close]
BLAST of mRNA_P-littoralis_Contig85.164.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.660e-14
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 2 
Query: 1181 VATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMGGSNR 1447
            + +  +I+  + EL RL  LD+SL EE+ F+ +L  GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR + VKELS ISKF+ G  R
Sbjct:   78 IYSFREIQRVLAELERLLALDTSLVEEKVFVHNLVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVKELSSISKFLTGPKR 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7C0_9PHAE2.680e-3335.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1T2_9PHAE1.390e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE1.660e-1446.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:564806..568552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1978
Hectar predicted targeting categoryother localisation
Exons2
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791720.3169653-UTR-P-littoralis_Contig85:564805..5652031680791720.3169653-UTR-P-littoralis_Contig85:564805..565203Pylaiella littoralis U1_48UTRP-littoralis_Contig85 564806..565203 +
1680791720.3480282-UTR-P-littoralis_Contig85:565884..5659071680791720.3480282-UTR-P-littoralis_Contig85:565884..565907Pylaiella littoralis U1_48UTRP-littoralis_Contig85 565885..565907 +
1680791720.3623476-UTR-P-littoralis_Contig85:567676..5685521680791720.3623476-UTR-P-littoralis_Contig85:567676..568552Pylaiella littoralis U1_48UTRP-littoralis_Contig85 567677..568552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791720.3292253-CDS-P-littoralis_Contig85:565203..5658841680791720.3292253-CDS-P-littoralis_Contig85:565203..565884Pylaiella littoralis U1_48CDSP-littoralis_Contig85 565204..565884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.164.1prot_P-littoralis_Contig85.164.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 565204..565884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.164.1

>prot_P-littoralis_Contig85.164.1 ID=prot_P-littoralis_Contig85.164.1|Name=mRNA_P-littoralis_Contig85.164.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
MSVLAIDMAAATAPPSMDAITQLCTETDAQNVSVWMPAKIAMGAGPRSAA
DLDLEDVVASVVQLAGAGDAPDPPKVFTIGMNARGEGGSVATVELRQKRA
LCQSLVEYLWRCTGNGGLKIGSGFLILPSAFPPIPPVSSGVGGGAAGPGL
PPQAPGLGGAAGGPSDPAEVGSADGGGSAAAPGSRKRTLAELHAAVDELS
ERQSLADGLGQPAERDAVATPPPGVP*
back to top

mRNA from alignment at P-littoralis_Contig85:564806..568552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.164.1 ID=mRNA_P-littoralis_Contig85.164.1|Name=mRNA_P-littoralis_Contig85.164.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3747bp|location=Sequence derived from alignment at P-littoralis_Contig85:564806..568552+ (Pylaiella littoralis U1_48)
GTATTATGAAAAGCGGAGATAGGGAATGACGCAGTCGGTCCCAATCCTGT
CATGCAATAAAGATCCGTTATGCCAGCAGTCAGGGTCATCTCTCACTTTT
TAATTTGCAACCTGTCTTGCAAGGAGAAACAGAGAGAAAAGAAGTAATCT
GTTGAGACCGCTCAGGCGTCAGCGCGCCCGCCCCGCTCCTACCGTCTCGT
GGCTTTGCCGCGGTGTGCGTTTTCCGGTGGTGCTCTCTCCCTCCGTGCTG
ATTGCTGGCTGCGGTCTGGCTTGTTGGTCTTCGCTACAGGGGGCTCTCGA
CCTCCCCCCTTTTTTCTGCCTCTCAGGATCCGCCTTTCTTTTCTGTTCTT
GGTTTCTAGCCTCTCGTGTCTCTCGCCTCCACCTGCCGTCCTTCCGGAAT
GAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCATGG
ATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGGTT
TGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCGGA
TCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGCAG
GCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCCGT
GGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCGCT
CTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGGAC
TGAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGATC
CCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTTCC
GCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCCAG
CGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCTCC
CGTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCTGA
GCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGCGG
TGGCCACGCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCGATA
AGGTGAGATTATACGTGTGTTTGGCTTTGTGTATCCGGACGACCCACTCC
ACTATCGCTCGCTCCTTCGTCCCTCCCTCTCTGCTCTGCTCCCTCTCTTC
GGTTACGTTCACCCTCACCTCTTTCTGTTATGCTCTGTTCGGGTACCGAA
AGAAGCAGAGCTCTGGGATGTTCTGAGTTATCTGCAAGACCTGTTTTTCT
GGTCTGTTTTTCAGTACTGCTGTTTGGTAGCTTCCTCAAGTTGGCTCTGT
GGGTCGTTCGGTTGGCTCTCGTCTCCGTGTTTTTACACCATATTTCGTAC
GGAGTGTGATGCAACCATACATCATCCTTTCCCTTTGTGCATGCCCGTCC
AAAGGTCATGCTTGTGCCAGTCTACACCGTGCAGGTTAGGTCATACTTCG
AAATATATATGTACAGCAGACCTGCGTATCAGCACTTTTATTTATTTTTA
CTTTCTCTTCTTTATTCTCTTTGTGGTTGAGGAAAATACAGCGGACATGT
GCGTCTCGGAACATTTTCGCAGCCATCTCTTTGCCCACATTCTGCAGGTT
ATGACTGTTTTTATGCGTGTTTTTGTCCACTGGTGCTCTTGTTTTTGGGG
ATTGTTGACGTGACATCGCTCGCAGGTCGCACGGCCTTTGACCCTTTTTC
TGTGGTAATGTCTTCTTTGACAGCTATCTCCCTCTTCGCATAGTTTCGCG
CTGTTGCCAGACCTCGCCACCTAAAATCATCCTTTAAATAACGATGAACC
TCTCTGTCTGTTTCTGTCTTGGACAAAGGTATTTGCTTTCGCCAAGCTCT
GCATTTTTCCTCCTTCCGTGCTCCGGTTGAATTTTTTGACTCTGCCTTTC
CAACTCTCTCTTTCCAACCCGCGAGTTTTTCTCATTTCCTCTGCGAGTTT
ACCCGTTCCGGCTCAGTTCTGTTTAGTTACACGCTCGCCCACTCCAGCTT
TGGTTTTCGATTTGCTTTTCCTGTTTCCCGTTCCGGCTCAGTTATGTTCA
GTTACACGTTCACCCGCCCCAGCCCCGTTTCAGCCTGTTGCTCATGGCTT
GGTTTTTCTTCTTTCAGTTCCTGTTCCACCGTTCACGCTCAGTTTCGGTT
TTTCGCTCTCGGCTCGAGGTCCCGTTTGCTCCAGTTCCGTTTTCAGCCTA
TTGCTCACGGCTTGGTTCCCGTTCCGTTCACGCTCAGCCGTTCCAGTTCA
GTTTAAGCCTTGTGCTCTTGGCTCGTTGCCTCTTTTGCTCCAGTGCCGTT
TTTCGGCTTGTCGCTCACAGCTTGGTTCCCTGTCAGTACACGCTCAGTTT
CGGCTTGTCGCTCTAGCCTGATTTTTTCCCGTTCAGTTCCCGCTCCACGA
ACACAGTTTCGACCTTTCGCTCTAGTTCAATTTTCGGCCTGTCGTTCACG
GCTTGAGTCCCCGCTCAGTACACGGTCATTTGCGGCCCGTCGCTCAGGGC
TTAGCTATTTTACGTTCCATTAATGCTAACCACTTTCACGCTCAGTTCGG
CCTTTCGCCTTTGGTTCGATGCCCCATTTACTCCAGCTTCGTTTTCGGCC
TGTTTTCTCACGGCTTGGTTCCCGGTTTCAGTTCCCGCGATGCCCGTTCA
CGCTCGTTTCGGCTCAGTTCGCGCTCACAATTCTTCGCTCAGTTGACGCT
CACCCGCTCCGGTTCAGTTCGAGATTGTTCGCTCATTGCCGACCTTTGCA
TGGCGGCCCCTCTTTCTTTCCGTTCCCATGCCCATTACTTTGACCGTCTT
TCCGGTTCTGCTCCGCTTTAGTTCAAAGCTTCGTGGGGTACCCTTCTGCA
CAAGGCCCCAATGTGTTTGCAGATCCCTACTATGCATGAAGCCCAGCAAG
TGGCCACTATCGCCGACATTCGCGCAACGGTGACCGAATTGTTGCGGTTG
GCTCAGCTAGACTCTTCGCTGGACGAGGAACGCAAGTTCATGGCGGACTT
GGAAGCAGGGTTAGACCATAGTATGATGACCGGCCAGTTAGGCATCGCGG
CCGTCTGGTTTCACGATAAAATGATGAGTTCCTCGGAGGAAGGGCAACAA
GTAGACCGTGCTAGAATCGTGAAAGAATTGTCGCACATCTCCAAGTTCAT
GGGCGGCTCGAACCGCGGTGGGGGAGGCAGTAGTGCGTACCAACAACCCC
CTATGCCGCCGGCGAATCTTTCGCAGCATTTTGGAGGACACGGGCGACAA
TCTGGTTGGAACGGTCCGGGCGCTCCCGGGCATTACGCTCCCCGGCCTCG
CTCTAAGCAGGCCAAGTGTTCCAAATGTAAGAATAGCGGTAGAACGGGGG
CGGACATCCTGCACTCGTACAGGCAGTGCCCGCTGGTCGTGTGTCATAAA
TGCAAGCGCGCCGGCCACATTGAAAAGTATTGTTCGGGGTGATACGACCG
GGCGTAGCCGCATTTTGTGATTTGTGGCCTTGCGCATGGGGTTGGGTCGC
GTTGACTCTTATTTGAACAAGCATGGTTCTCCGTCCTGCAGTAATGCTCA
TTTTCGTTTTCTTTTCTTTTTCTCGGGATTTTTCTCCTACTGTCGCAGAC
AGTTGTTCCGGGTGCGCCCTCTCGAGCAGAGTCACCTCGTTTCAGGCTGT
GACTCCGCTCCCGTGGTTGCTGTTCTCACTTGGTCTCTCACGGCGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:564806..568552+

>mRNA_P-littoralis_Contig85.164.1 ID=mRNA_P-littoralis_Contig85.164.1|Name=mRNA_P-littoralis_Contig85.164.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig85:564806..568552+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGG
ACTGAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTT
CCGCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCC
AGCGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCT
CCCGTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCT
GAGCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGC
GGTGGCCACGCCCCCGCCCGGCGTCCCATGA
back to top