mRNA_P-littoralis_Contig85.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.17.1
Unique NamemRNA_P-littoralis_Contig85.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig85.17.1 vs. uniprot
Match: D8LRM5_ECTSI (DUF3598 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM5_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 1.030e-154
Identity = 229/347 (65.99%), Postives = 265/347 (76.37%), Query Frame = 1 
Query:    1 ELTAVFLGALAWATRSA--AFSLPVPPSIGGLGDFHEYTSSHAGRWRGLWRTYDSDGVEQGDPDRMDTTLALSADGKTLTHVNTLFVGSVDSDCATCHDSVETRDIPVGRYTKETFRQRASSGCYVSGPGVTRRGDMTTEVGLTLDPDRRVRVVVSHRPVFDGVEPPSQLRLERIVVVRETRARVGGQTPPSIGSPWSFDRPRWLGLWHGNANILDLEDGGNSA-----WKEEMLPPTHLRKCRCSGATNDGDDSHASFEVDGGIRLDAPKSVMAGAPTEMSVSLAVGRESEALAPERVVQTKVRFEALGRIVDTVSRAAGTNVRISPPKLISFSVENLRPVASAGL 1020
            EL+ V LGA A        AFSLP+ PS     D+++YT+ H G+WRGLW TYDS GVE+GDPDRMDTT++LSADGKT+ HVNTLFVGSV SDC+TCHDSVETRDIP G+YT ETFR RASSGCY+ GPGVTR GDMTTE+G  LD DRRVRV+VSHRP  +GVEPP QL L+RIVVVRET A    QTPPS  S WSFDRP WLGLW G+  +LD   GG  A     WKE+ LPPTHLR+CRCSGA  + DDSHASFE+DGGI L+APK V AG P E+SV  A+GR+S+A  P R+VQ KVR EAL R+V+TV  AAG NVR++PPKL+  SV +L PV SAGL
Sbjct:    2 ELSGVVLGAAALVHLPTVLAFSLPLSPSGR---DWNDYTAQHVGKWRGLWTTYDSAGVERGDPDRMDTTISLSADGKTVAHVNTLFVGSVGSDCSTCHDSVETRDIPAGQYTTETFRHRASSGCYLFGPGVTRGGDMTTELGFRLDEDRRVRVLVSHRPQANGVEPPLQLALQRIVVVRETLA-AQRQTPPSASSCWSFDRPSWLGLWRGHEMVLD--GGGGDADDGLSWKEKALPPTHLRRCRCSGAAIEDDDSHASFELDGGILLEAPKIVDAGKPAELSVRCAIGRKSKAATPNRIVQAKVRLEALSRVVETVRSAAGENVRVAPPKLLQLSVHSLTPVESAGL 342
[Close]
BLAST of mRNA_P-littoralis_Contig85.17.1 vs. uniprot
Match: L1JQG1_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JQG1_GUITC)

HSP 1 Score: 117 bits (292), Expect = 2.230e-26
Identity = 99/317 (31.23%), Postives = 149/317 (47.00%), Query Frame = 1 
Query:   97 FHEYTSSHAGRWRGLWRTYDSDG-VEQGDPDRMDTTLALSADGKTLTHVNTLFVGSVDSDCATCHDSVETRDIPVGRYTKETFRQRASSGC-YVSGPGVTRRGDMTTEVGLTLDPDRRVRVVVSHRPVFD-GVEP---PSQLRLERIVVVRETRARVGGQTP-------PSIGSP--WSFDRP-RWLGLWHGNANILDLEDGGNSAWKEEMLPPTHLRKCRCSGATNDGDDSHASFEVDGGIRLDAPKSVMAGAPTEMSVSLAVGRESEALAPERVVQTKVRFEALGRIVDTVSRAAGTNVRISPPKLISFSVENLR 999
            F  + +++ G WR LW+TY++ G VEQ     +D    ++A+   + H+ T  +  + SDC TCHDSVET+ +PV R      R+    G  +V+GP V R G M+TE+ L    D R+RV V H PV+  G E    P  L++ R++V RE   R G  TP       P  G+P  W    P +W  +W G +N    +  G  AW+ E L        R  G     +D+  +  + GG+ L  P+ ++ G    + V         A  PE  +    R EA    +         +V I PPKL+   V++L+
Sbjct:   27 FEAFKTNNIGLWRALWQTYNAMGDVEQESKIAVDVYEDMNANTINIDHLVT--INQIQSDCETCHDSVETKTMPVARLEHRNLRRHVIVGSGHVNGPNVLRSGSMSTELCLRHG-DGRMRVTVQHAPVWKRGSEQTGVPDGLKIFRVIVAREC-LRDGAPTPDSEAASPPQRGNPTFWRGVSPFKWHAVWKGKSNTWG-QINGVKAWEIESLEEGDAWHGRPRG----DNDNTWTLRLQGGVLLQVPQLILPGEVECLRV---------AWLPEDDILK--RIEARVVALQQSEELNDQSVLIEPPKLLFLRVDDLQ 323
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRM5_ECTSI1.030e-15465.99DUF3598 domain-containing protein n=2 Tax=Ectocarp... [more]
L1JQG1_GUITC2.230e-2631.23Uncharacterized protein n=3 Tax=Guillardia theta T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:91043..92344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog55529.EKX50313
PFAMsDUF3598
Model size1026
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.65e-27
EggNOG OGs29Z2R@1|root,2RXVA@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF3598
Ec32 orthologEc-12_000370.1
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791715.4578905-CDS-P-littoralis_Contig85:91042..912901680791715.4578905-CDS-P-littoralis_Contig85:91042..91290Pylaiella littoralis U1_48CDSP-littoralis_Contig85 91043..91290 +
1680791715.477076-CDS-P-littoralis_Contig85:91566..923441680791715.477076-CDS-P-littoralis_Contig85:91566..92344Pylaiella littoralis U1_48CDSP-littoralis_Contig85 91567..92344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.17.1prot_P-littoralis_Contig85.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 91043..92344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.17.1

>prot_P-littoralis_Contig85.17.1 ID=prot_P-littoralis_Contig85.17.1|Name=mRNA_P-littoralis_Contig85.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp
ELTAVFLGALAWATRSAAFSLPVPPSIGGLGDFHEYTSSHAGRWRGLWRT
YDSDGVEQGDPDRMDTTLALSADGKTLTHVNTLFVGSVDSDCATCHDSVE
TRDIPVGRYTKETFRQRASSGCYVSGPGVTRRGDMTTEVGLTLDPDRRVR
VVVSHRPVFDGVEPPSQLRLERIVVVRETRARVGGQTPPSIGSPWSFDRP
RWLGLWHGNANILDLEDGGNSAWKEEMLPPTHLRKCRCSGATNDGDDSHA
SFEVDGGIRLDAPKSVMAGAPTEMSVSLAVGRESEALAPERVVQTKVRFE
ALGRIVDTVSRAAGTNVRISPPKLISFSVENLRPVASAGLG*
back to top

mRNA from alignment at P-littoralis_Contig85:91043..92344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.17.1 ID=mRNA_P-littoralis_Contig85.17.1|Name=mRNA_P-littoralis_Contig85.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1302bp|location=Sequence derived from alignment at P-littoralis_Contig85:91043..92344+ (Pylaiella littoralis U1_48)
GAGCTGACAGCTGTTTTCCTTGGTGCGTTAGCCTGGGCGACTCGTTCCGC
CGCCTTCAGCTTGCCGGTCCCCCCCTCGATAGGCGGTCTCGGCGATTTCC
ACGAATACACCTCGAGCCACGCGGGCAGATGGCGCGGCCTGTGGCGCACG
TACGACTCGGATGGCGTGGAGCAGGGCGACCCAGACCGCATGGATACCAC
CCTTGCCCTGTCTGCTGATGGAAAGACTCTCACTCACGTCAACACACTGT
GAGTCGGTTCCAATGAAGGTGGGTGCGGCCAGCGTTGCCGAGCCCCCTTC
GCCAAGAATGACTGGGACACAGGAAGCCGCTGCGAAACGGAATTGTCGAC
CCATGTGTGGCTGCTTTGGCAAAATTTTAGTGCTATGCTAGCCGAAATAC
TGCTGACAACTGCCGTGTCTGATGTACTATATGTACGGCAGGTTTGTTGG
GGCAAAATTTTAGTGCTATGCTAGCCGAAATACTGCTGACAACTGCCGTG
TCTGATGTACTATATGTACGTCAGGTTCGTTGGGTCGGTGGACTCAGACT
GTGCAACGTGTCACGACAGCGTGGAGACGCGGGATATTCCAGTGGGGCGA
TACACGAAGGAAACCTTCCGGCAGAGGGCATCGTCTGGTTGCTATGTGTC
TGGGCCGGGCGTAACCCGGCGGGGGGACATGACAACGGAAGTAGGTCTTA
CCCTTGACCCTGATCGACGGGTAAGGGTAGTTGTATCTCACCGACCAGTC
TTCGACGGTGTCGAACCACCTTCACAGCTTAGGCTAGAGCGAATAGTCGT
TGTCAGGGAAACGCGTGCGCGCGTTGGAGGGCAGACGCCCCCTTCCATTG
GTTCACCCTGGTCGTTCGACCGACCCCGTTGGCTTGGTCTGTGGCATGGT
AACGCCAACATCCTTGACTTGGAGGATGGTGGTAATTCGGCGTGGAAGGA
AGAAATGCTACCACCGACTCATTTGCGCAAGTGCCGTTGTTCCGGGGCGA
CAAACGATGGCGACGATTCACACGCCTCCTTCGAGGTTGATGGTGGAATT
CGCCTCGACGCCCCGAAGTCGGTAATGGCAGGGGCGCCGACGGAAATGTC
AGTAAGTTTGGCGGTAGGGAGAGAAAGCGAGGCGCTAGCACCGGAGCGTG
TGGTTCAAACCAAGGTACGATTCGAAGCCCTCGGCAGAATCGTTGACACC
GTGAGCAGGGCAGCAGGAACCAACGTGCGGATTTCCCCGCCGAAACTTAT
TTCCTTTTCGGTGGAGAACCTCAGACCCGTAGCCTCTGCAGGATTAGGAT
GA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:91043..92344+

>mRNA_P-littoralis_Contig85.17.1 ID=mRNA_P-littoralis_Contig85.17.1|Name=mRNA_P-littoralis_Contig85.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig85:91043..92344+ (Pylaiella littoralis U1_48)
GAGCTGACAGCTGTTTTCCTTGGTGCGTTAGCCTGGGCGACTCGTTCCGC
CGCCTTCAGCTTGCCGGTCCCCCCCTCGATAGGCGGTCTCGGCGATTTCC
ACGAATACACCTCGAGCCACGCGGGCAGATGGCGCGGCCTGTGGCGCACG
TACGACTCGGATGGCGTGGAGCAGGGCGACCCAGACCGCATGGATACCAC
CCTTGCCCTGTCTGCTGATGGAAAGACTCTCACTCACGTCAACACACTGT
TCGTTGGGTCGGTGGACTCAGACTGTGCAACGTGTCACGACAGCGTGGAG
ACGCGGGATATTCCAGTGGGGCGATACACGAAGGAAACCTTCCGGCAGAG
GGCATCGTCTGGTTGCTATGTGTCTGGGCCGGGCGTAACCCGGCGGGGGG
ACATGACAACGGAAGTAGGTCTTACCCTTGACCCTGATCGACGGGTAAGG
GTAGTTGTATCTCACCGACCAGTCTTCGACGGTGTCGAACCACCTTCACA
GCTTAGGCTAGAGCGAATAGTCGTTGTCAGGGAAACGCGTGCGCGCGTTG
GAGGGCAGACGCCCCCTTCCATTGGTTCACCCTGGTCGTTCGACCGACCC
CGTTGGCTTGGTCTGTGGCATGGTAACGCCAACATCCTTGACTTGGAGGA
TGGTGGTAATTCGGCGTGGAAGGAAGAAATGCTACCACCGACTCATTTGC
GCAAGTGCCGTTGTTCCGGGGCGACAAACGATGGCGACGATTCACACGCC
TCCTTCGAGGTTGATGGTGGAATTCGCCTCGACGCCCCGAAGTCGGTAAT
GGCAGGGGCGCCGACGGAAATGTCAGTAAGTTTGGCGGTAGGGAGAGAAA
GCGAGGCGCTAGCACCGGAGCGTGTGGTTCAAACCAAGGTACGATTCGAA
GCCCTCGGCAGAATCGTTGACACCGTGAGCAGGGCAGCAGGAACCAACGT
GCGGATTTCCCCGCCGAAACTTATTTCCTTTTCGGTGGAGAACCTCAGAC
CCGTAGCCTCTGCAGGATTAGGATGA
back to top