mRNA_P-littoralis_Contig85.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.10.1
Unique NamemRNA_P-littoralis_Contig85.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig85.10.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.010e-6
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:   22 DGVCEGNSREARECTYKTFRNQACYDAARSLNVQGMGVQVRRGKCFEKA 168
            D V     R     T+  FRNQ C+DAA+ L   GMGVQ+ R +CF +A
Sbjct:   93 DDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQA 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE8.010e-644.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:43098..44846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.9723396-CDS-P-littoralis_Contig85:43098..431791680791714.9723396-CDS-P-littoralis_Contig85:43098..43179Pylaiella littoralis U1_48CDSP-littoralis_Contig85 43099..43179 -
1680791714.9880056-CDS-P-littoralis_Contig85:44759..448461680791714.9880056-CDS-P-littoralis_Contig85:44759..44846Pylaiella littoralis U1_48CDSP-littoralis_Contig85 44760..44846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.10.1prot_P-littoralis_Contig85.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 43099..44846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.10.1

>prot_P-littoralis_Contig85.10.1 ID=prot_P-littoralis_Contig85.10.1|Name=mRNA_P-littoralis_Contig85.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
GAHSCCLDGVCEGNSREARECTYKTFRNQACYDAARSLNVQGMGVQVRRG
KCFEKA
back to top

mRNA from alignment at P-littoralis_Contig85:43098..44846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.10.1 ID=mRNA_P-littoralis_Contig85.10.1|Name=mRNA_P-littoralis_Contig85.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1749bp|location=Sequence derived from alignment at P-littoralis_Contig85:43098..44846- (Pylaiella littoralis U1_48)
GGAGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGA
AGCGCGGGAGTGTACGTACAAGACCTTCCGCAACCAGGTGTGTGAAACAG
CTAGAAATCGAGTGCGTCGGATCATCATGATGTGCAGCGTTAGCCGCAGC
ACATGCATGCACAAAAGCAGAGATCAGCAGCAGTACTGCTACAACACTCG
AAGTACTTCACGAATCGTGCGCTCCTGTCTGTGTTTACCATTCTCTTGTG
TTACCCCGCCTGGTGGTCCCTCAGAACACTTCGTACAGCAGCATACAACG
GCAGTAGGTTCGCGTCCGAGACATATGGGACTACAACACGCATCATACCT
GGTAACAAAGACACACCCACACATGAACCACAAAAAACACACCCAGACAC
TAAACGCGGTATGATACAAGTACTGCTGTAGCAGTGCTGTATGCGGTGTG
CTGACTGCGGCGTTGTGTGCGTGCACGCCGTACTCTCTCCCTTTTCTTCT
CTACCTTCACCTACCTCTGGGATTGCACGCTCCAGTTTTGAGTATGCATA
TACTCTACTACCTGTCTTGCAGTCTCTGTTGCTGCCGTACGTTTGTTGTG
CTTTGTGCGGTAATGTGTGCTCGGCCCTCGCATGGTGTTCTCGATCGCTT
TCTCTCTTTTATATTCATTTCGTGTGCTGTTTGTCTGCCGTAGCAGTATA
TCTGCTGCCGAGAGAGACAGGGAGAGAGAGAGAGCGAGGGCATACCTGTG
TGCGTGATTCGCATCAATGTTGTGTGCTGGTCGCTACAGCAGTACGTACT
GCGACTCGCTGTGTATTCGTGTTTGCTTTCGACTGATGCCGCTGTCTTGC
GCTCTGCCTGTGTGCTGCTTCGGTACTGCGGCCCGATGGGCCCCTATAAA
CCTATAAACCTACGTCTGTGCCTGCTGTCTTGTTTGCCGTTGACCTTATC
CCTTTGTTATTTGTGCTGTGTGTCCAAAGAAGTGGTCGGCAGGCATTATT
GCAGGATTTCTGGTGTTTAGTTGCCAAGGCGTTATGGCAGGTGCAGCAAG
TGCAGATAGGGGCTGCCTAAAAATATATCTTCTGCCAAGCCATTTCAAAC
CTTCACGCCTGTGGGTGCACCCTACTTGTCTCTGCGCGAAAAGTATCGTG
ATGGAACAGCGTAACCTCAAATAGCCTCTACCCCACGACGGCGTTCCGAA
GAAATTAAGTTGTGAAACTTGATGCCCCCCCCCCCCCACTTCAGCTAAAG
CTAAGGTGCAAGCGGTACCCCTGGTAACCAACCGCCTGCAGCCAACGCGG
CGCACTTTTCACTGGCGGCAGGTCGTTAATTCGGTGATTATTATGTTTCC
TGCTTCCACATGCACCATGACCAAGATTCGTTATCGGGGACGACACCACG
GTCTCCTCCACTTTGTACGAATTTCGATACGCCTCCACTACCAATAATCC
ACCAGCAATTTCCCTCTGAATGTAACATTTTAGAATCATTGTTAACTACG
AATTAGGTTTGTGATGAATCCCCCGCATGATGTCAATTTATAGTACTTAT
TTTTGTCAGAGGATGTTTTGCGCAAGATTTAATCATTTTGCGCTGACGGC
CTGCACTTCAAAGCCGCGCCCTACCACAACACCCCACACTTTCTTCACCC
TGCATGATTTTAAACAGGCGTGCTACGATGCGGCGCGTTCTCTGAATGTC
CAAGGCATGGGTGTACAAGTTCGTCGCGGTAAATGCTTCGAAAAGGCAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:43098..44846-

>mRNA_P-littoralis_Contig85.10.1 ID=mRNA_P-littoralis_Contig85.10.1|Name=mRNA_P-littoralis_Contig85.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig85:43098..44846- (Pylaiella littoralis U1_48)
GGAGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGA
AGCGCGGGAGTGTACGTACAAGACCTTCCGCAACCAGGCGTGCTACGATG
CGGCGCGTTCTCTGAATGTCCAAGGCATGGGTGTACAAGTTCGTCGCGGT
AAATGCTTCGAAAAGGCA
back to top