mRNA_P-littoralis_Contig85.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.1.1
Unique NamemRNA_P-littoralis_Contig85.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A6H5JIA4_9PHAE (PHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA4_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 1.280e-140
Identity = 216/288 (75.00%), Postives = 240/288 (83.33%), Query Frame = 1
Query:    1 QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKYRKMARPEQLKNLIDEDALQRAHEKRRKVDHGVTEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAAD--GGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKKAVSANTTPVKLSAAVKLPEN 858
            QEF+AICAHLP ELKDDL +VA LSEETHRLTAELSRDQAEILERAKAKYR+M RPEQLKNLIDEDALQ++ +KRRKVD  V+EKVSITK+MYGALD CIK+IDDEIDKLEKDVKESYG +PDIPSLAPE+ AE+KK A          GGL AGPQTRAG+AAYP  A A           L   AGG  R N+L+S+NEPVYCVCRQ+GWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQK++ FWLCPGC+ DAR KE+REQL ++A SANTTPVK +AAVKLPEN
Sbjct:   39 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSRQKRRKVDESVSEKVSITKRMYGALDTCIKNIDDEIDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTAXXXXXXXXXXGGL-AGPQTRAGVAAYPAAALAGG----VGAGALXXXAGGAVRSNDLLSTNEPVYCVCRQVGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKEIGFWLCPGCSVDARAKEKREQLERRATSANTTPVKPAAAVKLPEN 321          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: D7FVE0_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE0_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 1.010e-137
Identity = 220/288 (76.39%), Postives = 243/288 (84.38%), Query Frame = 1
Query:    1 QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKYRKMARPEQLKNLIDEDALQRAHEKRRKVDHGVTEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAAD--GGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKKAVSANTTPVKLSAAVKLPEN 858
            QEF+AICAHLP ELKDDL +VA LSEETHRLTAELSRDQAEILERAKAKYR+M RPEQLKNLIDEDALQ++ EKRRKVD  V+EKVSITK+MYGALD CIK+IDDEIDKLEKDVKESYG +PDIPSLAPE+ AE+KK A          GGL AGPQTRAG+AAYP  AA A G   XXXXX         RGN+L+S+NEPVYCVCRQ+GWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQK++ FWLCPGC+ DAR KE+REQL ++A S NTTPVK +AAVKLPEN
Sbjct:   30 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSREKRRKVDESVSEKVSITKRMYGALDTCIKNIDDEIDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTAXXXXXXXXXXGGL-AGPQTRAGVAAYP-AAALAGGVGAXXXXXXXXX---XVRGNDLLSTNEPVYCVCRQVGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKEIGFWLCPGCSVDARAKEKREQLERRATSTNTTPVKPAAAVKLPEN 312          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: J3LST5_ORYBR (PHD finger protein ING n=6 Tax=Oryzinae TaxID=1648021 RepID=J3LST5_ORYBR)

HSP 1 Score: 88.6 bits (218), Expect = 1.480e-16
Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSA---ENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            TEKV + ++ Y  +++ IK +D+++ +  +D+K+   + PD PS+ P +SA   ++K+    +   A          R     +  +    S         +          ++ +  NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL   + +    W CP C
Sbjct:   91 TEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQEGKIPPDEPSILPPISAFSRDDKRRPGFSTPQATKKFREREWDRERSMDFDLMPPPGSNKKTSTPMDV----------DQTIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 250          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A0A9NUC7_ARUDO (PHD-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NUC7_ARUDO)

HSP 1 Score: 82.4 bits (202), Expect = 4.610e-16
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  583 VSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            +  NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL   + +    W CP C
Sbjct:   25 IDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 79          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A448X7Q8_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448X7Q8_9PLAT)

HSP 1 Score: 81.3 bits (199), Expect = 1.250e-15
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  583 VSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAR 765
            V  NEP YCVC+Q+ +G+M+ CDN DC H EWFH+ CVGL +  + Q   W CP C AD +
Sbjct:   23 VDPNEPTYCVCKQVSYGEMVACDNPDC-HVEWFHFGCVGLTVKPKGQ---WFCPQCIADGK 79          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: K4AE43_SETIT (PHD finger protein ING n=8 Tax=Poaceae TaxID=4479 RepID=K4AE43_SETIT)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15
Identity = 49/168 (29.17%), Postives = 78/168 (46.43%), Query Frame = 1
Query:  247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            TEKV + ++ Y  +++ IK +D+++ +  +D+K    + PD P + P +   ++        +        PQ                             AG     ++++  NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL   + +    W CP C
Sbjct:   89 TEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKHEGKIPPDEPPVLPPIPVVSRDEKRRLGFST-------PQASKKFREREWDRERGMDFDLMPPPGSSKKAGTPMDVDQMIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYTCVGL-TPETRFKGKWFCPTC 248          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A199VF25_ANACO (PHD finger protein ING n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199VF25_ANACO)

HSP 1 Score: 85.5 bits (210), Expect = 1.890e-15
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPE---VSAENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            TEKV + ++ Y  +++ IK +D+++ +  +D+K+   + PD P++ P    V+ + K+          G +T  PQ++       GV                         ++ +  NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL   + +    W CP C
Sbjct:   91 TEKVLLAQQAYNLIESHIKRLDEDLAQFAEDLKQEGKIPPDEPAILPPLPVVTRDEKRKG--------GYIT--PQSKRLKEREWGVERGMDLDLMPPPGSNKKSTPASVDVDQSIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 250          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A1E3PG82_9ASCO (Chromatin modification-related protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PG82_9ASCO)

HSP 1 Score: 85.1 bits (209), Expect = 3.050e-15
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  574 NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKK 798
            + L+   + +YC CRQ+ +GDMIGCDNE+C++ EWFHY CVGL+   Q     W CP C    +EKE +++  KK
Sbjct:  194 SSLMGDEDEIYCFCRQVSFGDMIGCDNENCKY-EWFHYGCVGLKEPPQG---IWYCPACTKTTKEKETKKERKKK 264          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: I1GNB5_BRADI (PHD finger protein ING n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GNB5_BRADI)

HSP 1 Score: 84.7 bits (208), Expect = 3.480e-15
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  574 NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            ++++  NEP YCVC Q+ +GDMI CDNE+CE GEWFHY CVGL   + +    W CP C
Sbjct:  192 DQMIDPNEPTYCVCHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 249          
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: UPI001FB1588C (PHD finger protein ING2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1588C)

HSP 1 Score: 84.7 bits (208), Expect = 3.790e-15
Identity = 53/177 (29.94%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSA--ENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARG-------NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
            TEKV + ++ Y  +D+ +K +D++++   +D+K+   +  D P+  P V     N+K  A         +   PQ++     Y                 L    GG+ +        ++ +  NEP YC+C Q+ +GDMI CDNE C+ GEWFHY CVGL   + +    W CP C
Sbjct:   91 TEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPSDEPATLPPVPLVPRNEKRKA---------IYTAPQSQTRRVEYR-----ERDWDRDRDFELMPPPGGLKKDFSVPVEIDQPIDPNEPTYCICHQVSYGDMIACDNESCQGGEWFHYSCVGL-TPETRFRGKWYCPTC 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIA4_9PHAE1.280e-14075.00PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVE0_ECTSI1.010e-13776.39PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
J3LST5_ORYBR1.480e-1630.41PHD finger protein ING n=6 Tax=Oryzinae TaxID=1648... [more]
A0A0A9NUC7_ARUDO4.610e-1655.36PHD-type domain-containing protein n=1 Tax=Arundo ... [more]
A0A448X7Q8_9PLAT1.250e-1552.46Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
K4AE43_SETIT1.830e-1529.17PHD finger protein ING n=8 Tax=Poaceae TaxID=4479 ... [more]
A0A199VF25_ANACO1.890e-1530.99PHD finger protein ING n=3 Tax=Ananas comosus TaxI... [more]
A0A1E3PG82_9ASCO3.050e-1546.67Chromatin modification-related protein n=1 Tax=Nad... [more]
I1GNB5_BRADI3.480e-1554.24PHD finger protein ING n=4 Tax=Brachypodium distac... [more]
UPI001FB1588C3.790e-1529.94PHD finger protein ING2 n=1 Tax=Impatiens glanduli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:7428..9930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVE0
PFAMsING,PHD
Model size1110
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00021,RC00043,RC03180
KEGG koko:K00927,ko:K07561,ko:K11319,ko:K11346,ko:K11379,ko:K19197,ko:K19198
KEGG ReactionR01512,R10455
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.65e-138
EggNOG OGsCOG5034@1|root,KOG1973@2759|Eukaryota
Ec32 ortholog descriptionPHD-type zinc finger and ING domain protein
Ec32 orthologEc-14_000760.1
EC2.5.1.108,2.7.2.3
Descriptionmethylated histone binding
Cds size1110
COG categoryB
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.1.1prot_P-littoralis_Contig85.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 7428..9930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.43736-CDS-P-littoralis_Contig85:7427..75831680791714.43736-CDS-P-littoralis_Contig85:7427..7583Pylaiella littoralis U1_48CDSP-littoralis_Contig85 7428..7583 +
1680791714.4514716-CDS-P-littoralis_Contig85:7840..79941680791714.4514716-CDS-P-littoralis_Contig85:7840..7994Pylaiella littoralis U1_48CDSP-littoralis_Contig85 7841..7994 +
1680791714.463974-CDS-P-littoralis_Contig85:8201..82931680791714.463974-CDS-P-littoralis_Contig85:8201..8293Pylaiella littoralis U1_48CDSP-littoralis_Contig85 8202..8293 +
1680791714.4802186-CDS-P-littoralis_Contig85:8669..89061680791714.4802186-CDS-P-littoralis_Contig85:8669..8906Pylaiella littoralis U1_48CDSP-littoralis_Contig85 8670..8906 +
1680791714.4901087-CDS-P-littoralis_Contig85:9291..93631680791714.4901087-CDS-P-littoralis_Contig85:9291..9363Pylaiella littoralis U1_48CDSP-littoralis_Contig85 9292..9363 +
1680791714.5088325-CDS-P-littoralis_Contig85:9531..99301680791714.5088325-CDS-P-littoralis_Contig85:9531..9930Pylaiella littoralis U1_48CDSP-littoralis_Contig85 9532..9930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.1.1

>prot_P-littoralis_Contig85.1.1 ID=prot_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp
QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKY
RKMARPEQLKNLIDEDALQRAHEKRRKVDHGVTEKVSITKKMYGALDACI
KSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAADGGL
TAGPQTRAGLAAYPGVAAAASGGAAAGVGALGAVAGGVARGNELVSSNEP
VYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC
AADAREKERREQLVKKAVSANTTPVKLSAAVKLPENGEQEEEDEDNDNDI
GNGNDNDTEEGGAKVEDLGNQDKEDKPRDGRGSGSSAPGGKSETSMATGS
ERGGEPLRATGGSGGGGAAG
back to top

mRNA from alignment at P-littoralis_Contig85:7428..9930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.1.1 ID=mRNA_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2503bp|location=Sequence derived from alignment at P-littoralis_Contig85:7428..9930+ (Pylaiella littoralis U1_48)
CAGGAGTTCGTCGCCATCTGTGCTCACCTTCCGGCGGAGCTGAAGGACGA CCTCAGTAGGGTCGCCGCGCTCAGCGAAGAGACGCACCGCCTCACCGCTG AGCTCAGCCGGGACCAGGCAGAGATACTGGAGAGGGCTAAGGCCAAGTAC AGAAAGGTGCGCAGTTGCGCCGTTGCGGACTCAAATGTTTTACAGCAGCT CTCTGCGTGAAAGCGTGCTTTGAGTCCAGTTACGCCGCGAAAGGACCGAT GATACGCTGAATTGCTGCCGTCCGCGCCTCCTCTTAGCCCGTCCGCTATC ACGAAAAGCTTTTATTTCGCGCTGTCGTGCAGAGTGGCACTCTTAGCTTG AACTACATTCACTGACGTTGTATTGGCCGTGCCGCACCGTGTTTTCTCTG CCGTGGTTTTCAGATGGCGAGGCCCGAACAGCTGAAGAATCTCATAGACG AAGACGCCCTCCAGAGGGCTCATGAAAAACGACGAAAGGTGGACCACGGC GTGACTGAAAAGGTTTCAATTACCAAGAAGATGTACGGCGCGCTGGACGC CTGCATCAAGAGCATTGGTAAGCGAAGCGAGATCGTTCCAACTGTCGATC GCTTGGCTTGTGACCGTGCAGCTCGGGGACTTTCGTTTGTTGCTTGCTGA GCGGGTTCTACGGCAGAGCCGTAGTGGACTCTCTAGGCTTGATACAATAT GACTAACGCTGAATTCGCACGCTTGGCCCGCCGCTGTCCACCGAACTTCG ATGAACCCGAAACCCGCTATAAAGATGACGAGATTGACAAGCTGGAGAAG GATGTAAAGGAGAGCTATGGCGTCATACCGGATATCCCGTCGCTGGCACC TGAAGTATCAGCGGAGGTGACTATAGCGGTTGCACCGTATCATTTTGTTA CCGGTTTCTGCTTTGTCCGTGGCTGTGCAGCAACGGTGAATTTCGCACCA TCGGTGTAGGCAGTGGCGCAGTAGGAACATGACCGCAGGCAGCCTGGATA TAATTGTTGAGCACGACAGACAAATAAGAATCGTTGTTATACCATCAAGA ATATAGCTCCATCTTTGCTGGAAGGATTCGGTCTTGCGCGCTGGCCAAGC AAGTGCTGTGCCAATTAGCGATTCCTTGGGTGTAGCTGCGTTTATCTCTT CCACGCGCTGCATATGCACCACGTCTGTACGTCACTTGGCAAGCTTAAGA CCCCGGGCGTGCATGCTTGTTTTTCTCCTGCTTCACTGCCAGAACAAAAA AAATGCAGCGGCGGCGGCGTTGGCAGCAGACGGAGGGCTCACTGCCGGAC CGCAGACAAGGGCAGGGCTGGCCGCGTACCCGGGTGTGGCGGCAGCTGCC TCAGGAGGAGCAGCGGCCGGAGTTGGAGCGTTGGGGGCCGTAGCGGGCGG GGTCGCCAGGGGTAATGAGCTCGTCAGCTCCAACGAGCCCGTTTATTGCG TTTGTCGCCAAATCGGCTGGGGAGACATGGTGAGCGGAAGCTTGACATGC GTACCCTGCCATTTTTGTCCTTGATCGGCATCCCGGATGACATTCTCGGG TTTCGTTTTGTTAGTGGCAGCATGTAGCACATGTGAAGGGGGAAAACATC AAGCCACAAAATTCGTCCATATCGAGTTTAGCGCACAACTCGTGCTAAAA TTATGACGTCGAGAGAATCGGTCCATTTGTCCCTAGTTTTCACCGCCCAC CCTTGCCCTCCGCTAGTGAATGGTAACCTTGCACGCGCAACTCCGAAACC GGGCGGCGAAGAGTCTGATTCACACCCCATCCCACCCCCGATGTTATTTT CGCCCCACGTTCTTCATTTTGTCACTCACGTGTTGTACCGTTCTGTACCC ACGGCTGACGACAGATCGGCTGCGACAACGAGGACTGTGAGCATGGAGAG TGGTTCCACTACCACTGTGTCGGCCTGGAGATGGTGGTAAGTTTCCCCAA AGCGCTGCGAAGGAATGAAAGCGCTTCTAAACTAGTAGCAGGCAATATGA GGGTCGTTGTTAGTGGACAAAAAAACCGCCTGTGTTAGCTGTTGACCGTG CCATATCATACCAAAAGACACGGCTCGCCCGTGTTTTGCCTGGCAATGCG ACAGGACCAGAAACAGCTTATATTCTGGCTGTGCCCTGGCTGCGCCGCGG ACGCTAGAGAAAAAGAAAGGAGGGAGCAACTTGTCAAGAAAGCTGTGAGC GCAAACACCACTCCGGTCAAGCTGTCTGCTGCCGTCAAGTTACCCGAGAA CGGCGAGCAAGAAGAGGAAGACGAGGACAACGACAACGACATCGGCAACG GCAACGACAACGACACCGAAGAGGGGGGGGCGAAAGTAGAAGATCTTGGC AACCAGGATAAAGAAGATAAACCAAGAGATGGTAGAGGATCCGGGTCGAG CGCTCCCGGCGGAAAGAGCGAAACTTCGATGGCAACGGGAAGCGAAAGAG GAGGCGAACCCCTCCGGGCCACAGGAGGTAGCGGAGGGGGTGGAGCCGCA GGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:7428..9930+

>mRNA_P-littoralis_Contig85.1.1 ID=mRNA_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig85:7428..9930+ (Pylaiella littoralis U1_48)
CAGGAGTTCGTCGCCATCTGTGCTCACCTTCCGGCGGAGCTGAAGGACGA
CCTCAGTAGGGTCGCCGCGCTCAGCGAAGAGACGCACCGCCTCACCGCTG
AGCTCAGCCGGGACCAGGCAGAGATACTGGAGAGGGCTAAGGCCAAGTAC
AGAAAGATGGCGAGGCCCGAACAGCTGAAGAATCTCATAGACGAAGACGC
CCTCCAGAGGGCTCATGAAAAACGACGAAAGGTGGACCACGGCGTGACTG
AAAAGGTTTCAATTACCAAGAAGATGTACGGCGCGCTGGACGCCTGCATC
AAGAGCATTGATGACGAGATTGACAAGCTGGAGAAGGATGTAAAGGAGAG
CTATGGCGTCATACCGGATATCCCGTCGCTGGCACCTGAAGTATCAGCGG
AGAACAAAAAAAATGCAGCGGCGGCGGCGTTGGCAGCAGACGGAGGGCTC
ACTGCCGGACCGCAGACAAGGGCAGGGCTGGCCGCGTACCCGGGTGTGGC
GGCAGCTGCCTCAGGAGGAGCAGCGGCCGGAGTTGGAGCGTTGGGGGCCG
TAGCGGGCGGGGTCGCCAGGGGTAATGAGCTCGTCAGCTCCAACGAGCCC
GTTTATTGCGTTTGTCGCCAAATCGGCTGGGGAGACATGATCGGCTGCGA
CAACGAGGACTGTGAGCATGGAGAGTGGTTCCACTACCACTGTGTCGGCC
TGGAGATGGTGGACCAGAAACAGCTTATATTCTGGCTGTGCCCTGGCTGC
GCCGCGGACGCTAGAGAAAAAGAAAGGAGGGAGCAACTTGTCAAGAAAGC
TGTGAGCGCAAACACCACTCCGGTCAAGCTGTCTGCTGCCGTCAAGTTAC
CCGAGAACGGCGAGCAAGAAGAGGAAGACGAGGACAACGACAACGACATC
GGCAACGGCAACGACAACGACACCGAAGAGGGGGGGGCGAAAGTAGAAGA
TCTTGGCAACCAGGATAAAGAAGATAAACCAAGAGATGGTAGAGGATCCG
GGTCGAGCGCTCCCGGCGGAAAGAGCGAAACTTCGATGGCAACGGGAAGC
GAAAGAGGAGGCGAACCCCTCCGGGCCACAGGAGGTAGCGGAGGGGGTGG
AGCCGCAGGC
back to top