mRNA_P-littoralis_Contig120.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.16.1
Unique NamemRNA_P-littoralis_Contig120.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:123360..123748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size391
Hectar predicted targeting categorysignal anchor
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789513.86582-UTR-P-littoralis_Contig120:123359..1234031680789513.86582-UTR-P-littoralis_Contig120:123359..123403Pylaiella littoralis U1_48UTRP-littoralis_Contig120 123360..123403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789513.8766594-CDS-P-littoralis_Contig120:123403..1237481680789513.8766594-CDS-P-littoralis_Contig120:123403..123748Pylaiella littoralis U1_48CDSP-littoralis_Contig120 123404..123748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.16.1prot_P-littoralis_Contig120.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 123404..123748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.16.1

>prot_P-littoralis_Contig120.16.1 ID=prot_P-littoralis_Contig120.16.1|Name=mRNA_P-littoralis_Contig120.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MHLRRGTFSKRRRKLELDLQQKRRPIGEWCYKNAPTRLKYYLYTTAVFTI
LCFHLLSYLYATGPTTVSSPTTNYMPPPPPLNDRTSPLLWRALSQNRNRF
RCDKVTISGDTIGGT
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mRNA from alignment at P-littoralis_Contig120:123360..123748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.16.1 ID=mRNA_P-littoralis_Contig120.16.1|Name=mRNA_P-littoralis_Contig120.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=389bp|location=Sequence derived from alignment at P-littoralis_Contig120:123360..123748+ (Pylaiella littoralis U1_48)
CTCGTTATTGTTTGGGGGGGGGCTGAATCGATTGCACAGCTAGCATGCAT
TTGCGTCGGGGAACTTTTTCAAAACGGCGACGGAAACTGGAGCTAGACTT
GCAGCAGAAGCGTCGACCGATAGGGGAGTGGTGTTACAAAAATGCCCCCA
CCCGATTAAAATATTACTTGTACACAACAGCAGTGTTCACAATTTTGTGC
TTTCATTTGCTAAGCTACCTTTATGCGACCGGCCCCACTACGGTGTCCTC
GCCGACCACTAATTACATGCCCCCTCCCCCCCCCCTGAATGACCGTACGT
CGCCCCTCCTTTGGCGTGCTCTATCTCAAAATCGAAACCGTTTTCGCTGT
GATAAAGTTACGATCTCCGGAGATACTATTGGCGGCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:123360..123748+

>mRNA_P-littoralis_Contig120.16.1 ID=mRNA_P-littoralis_Contig120.16.1|Name=mRNA_P-littoralis_Contig120.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig120:123360..123748+ (Pylaiella littoralis U1_48)
ATGCATTTGCGTCGGGGAACTTTTTCAAAACGGCGACGGAAACTGGAGCT
AGACTTGCAGCAGAAGCGTCGACCGATAGGGGAGTGGTGTTACAAAAATG
CCCCCACCCGATTAAAATATTACTTGTACACAACAGCAGTGTTCACAATT
TTGTGCTTTCATTTGCTAAGCTACCTTTATGCGACCGGCCCCACTACGGT
GTCCTCGCCGACCACTAATTACATGCCCCCTCCCCCCCCCCTGAATGACC
GTACGTCGCCCCTCCTTTGGCGTGCTCTATCTCAAAATCGAAACCGTTTT
CGCTGTGATAAAGTTACGATCTCCGGAGATACTATTGGCGGCACC
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