mRNA_P-littoralis_Contig85.141.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.141.1
Unique NamemRNA_P-littoralis_Contig85.141.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:547002..547557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size556
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.2985513-CDS-P-littoralis_Contig85:547001..5475321680791714.2985513-CDS-P-littoralis_Contig85:547001..547532Pylaiella littoralis U1_48CDSP-littoralis_Contig85 547002..547532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.3147027-UTR-P-littoralis_Contig85:547532..5475571680791714.3147027-UTR-P-littoralis_Contig85:547532..547557Pylaiella littoralis U1_48UTRP-littoralis_Contig85 547533..547557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.141.1prot_P-littoralis_Contig85.141.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 547002..547532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.141.1

>prot_P-littoralis_Contig85.141.1 ID=prot_P-littoralis_Contig85.141.1|Name=mRNA_P-littoralis_Contig85.141.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MSASRSDRASILTNADSSDDEGDPIPAFDPPSGWNNPPAGLPASSLDDAA
DRVRELESLTTERAKNDTHIGELRKDVREREDAAKDQQEQLDRNRQETSL
QAKKKANQLEITEAKRQAAQAKKAAARKAKDDQMERIRLLRAEVQAQEND
IMELRAAAAASVSVTSAPASSRSRSPP
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mRNA from alignment at P-littoralis_Contig85:547002..547557-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.141.1 ID=mRNA_P-littoralis_Contig85.141.1|Name=mRNA_P-littoralis_Contig85.141.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=556bp|location=Sequence derived from alignment at P-littoralis_Contig85:547002..547557- (Pylaiella littoralis U1_48)
ACAGCCTGGGTTCCTGCGCGAGGACATGTCTGCTTCCAGGTCGGACCGGG
CATCTATCCTGACCAACGCGGACTCCTCTGATGACGAAGGGGACCCGATT
CCTGCTTTCGACCCTCCGAGTGGCTGGAATAACCCGCCTGCTGGGTTGCC
CGCATCCTCCCTGGACGATGCAGCGGACAGGGTTCGCGAACTCGAGAGCC
TCACCACCGAGCGGGCCAAGAATGACACCCACATAGGCGAGCTGCGTAAG
GACGTGCGGGAACGCGAGGATGCGGCAAAGGACCAGCAAGAACAGCTGGA
TCGGAACCGCCAGGAAACTTCTCTCCAGGCCAAGAAGAAGGCCAACCAAC
TCGAGATCACGGAGGCCAAACGACAAGCGGCACAGGCGAAGAAAGCGGCC
GCACGGAAGGCTAAAGACGACCAGATGGAGCGGATTCGGCTGCTCCGAGC
AGAAGTACAGGCCCAGGAAAACGACATCATGGAGCTCCGCGCTGCCGCCG
CCGCCTCGGTTTCGGTCACCTCTGCGCCGGCCTCTTCTCGCTCACGTTCT
CCTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:547002..547557-

>mRNA_P-littoralis_Contig85.141.1 ID=mRNA_P-littoralis_Contig85.141.1|Name=mRNA_P-littoralis_Contig85.141.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig85:547002..547557- (Pylaiella littoralis U1_48)
ATGTCTGCTTCCAGGTCGGACCGGGCATCTATCCTGACCAACGCGGACTC
CTCTGATGACGAAGGGGACCCGATTCCTGCTTTCGACCCTCCGAGTGGCT
GGAATAACCCGCCTGCTGGGTTGCCCGCATCCTCCCTGGACGATGCAGCG
GACAGGGTTCGCGAACTCGAGAGCCTCACCACCGAGCGGGCCAAGAATGA
CACCCACATAGGCGAGCTGCGTAAGGACGTGCGGGAACGCGAGGATGCGG
CAAAGGACCAGCAAGAACAGCTGGATCGGAACCGCCAGGAAACTTCTCTC
CAGGCCAAGAAGAAGGCCAACCAACTCGAGATCACGGAGGCCAAACGACA
AGCGGCACAGGCGAAGAAAGCGGCCGCACGGAAGGCTAAAGACGACCAGA
TGGAGCGGATTCGGCTGCTCCGAGCAGAAGTACAGGCCCAGGAAAACGAC
ATCATGGAGCTCCGCGCTGCCGCCGCCGCCTCGGTTTCGGTCACCTCTGC
GCCGGCCTCTTCTCGCTCACGTTCTCCTCCG
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