mRNA_P-littoralis_Contig85.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.65.1
Unique NamemRNA_P-littoralis_Contig85.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:293000..293532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size533
Hectar predicted targeting categorymitochondrion
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.1583545-UTR-P-littoralis_Contig85:292999..2931721680791714.1583545-UTR-P-littoralis_Contig85:292999..293172Pylaiella littoralis U1_48UTRP-littoralis_Contig85 293000..293172 +
1680791714.1847248-UTR-P-littoralis_Contig85:293502..2935321680791714.1847248-UTR-P-littoralis_Contig85:293502..293532Pylaiella littoralis U1_48UTRP-littoralis_Contig85 293503..293532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.1712744-CDS-P-littoralis_Contig85:293172..2935021680791714.1712744-CDS-P-littoralis_Contig85:293172..293502Pylaiella littoralis U1_48CDSP-littoralis_Contig85 293173..293502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.65.1prot_P-littoralis_Contig85.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 293173..293502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.65.1

>prot_P-littoralis_Contig85.65.1 ID=prot_P-littoralis_Contig85.65.1|Name=mRNA_P-littoralis_Contig85.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MIRYRTTPPLKNYTVPHPCAILFQFRKRRQSVSVSIWLEARIAACFIIPA
RFTPSRHKKARPHDEPDTHPSFASIAAVFSPCPLPHPPLGWSSSFARLAE
RRGVSRAWR*
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mRNA from alignment at P-littoralis_Contig85:293000..293532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.65.1 ID=mRNA_P-littoralis_Contig85.65.1|Name=mRNA_P-littoralis_Contig85.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig85:293000..293532+ (Pylaiella littoralis U1_48)
GGTCTTTGGTGGGTGGCTTGTTTGATGTTGTTTGTTGATTCATTCGGTCT
TTGTCGGCAGAAGCAAAGCGACGACTACGAACAGAACAAAAACAAGTTAA
TTCGCTTGCTTGTTCTGTTGCTGCTGCTGACTCAAAGTTGGTCCTCGCTC
GGTTATGTATCTTACACGAATGTATGATCAGATATCGTACCACACCACCT
CTGAAAAATTACACAGTACCACACCCGTGTGCTATTTTGTTTCAATTCCG
AAAAAGGCGCCAGTCTGTCTCAGTCAGTATATGGCTGGAAGCGAGGATAG
CTGCTTGTTTTATTATCCCAGCTAGATTCACGCCGTCTCGGCACAAAAAG
GCGAGACCGCACGATGAACCCGACACCCACCCTTCGTTTGCAAGCATTGC
GGCTGTTTTCTCGCCGTGCCCCCTCCCTCACCCCCCTCTTGGATGGAGCT
CGTCCTTTGCGCGACTCGCCGAACGCCGTGGCGTTTCGCGCGCCTGGCGA
TAAATAATACATTCCGGTGGGCGTACAAACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:293000..293532+

>mRNA_P-littoralis_Contig85.65.1 ID=mRNA_P-littoralis_Contig85.65.1|Name=mRNA_P-littoralis_Contig85.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig85:293000..293532+ (Pylaiella littoralis U1_48)
ATGATCAGATATCGTACCACACCACCTCTGAAAAATTACACAGTACCACA
CCCGTGTGCTATTTTGTTTCAATTCCGAAAAAGGCGCCAGTCTGTCTCAG
TCAGTATATGGCTGGAAGCGAGGATAGCTGCTTGTTTTATTATCCCAGCT
AGATTCACGCCGTCTCGGCACAAAAAGGCGAGACCGCACGATGAACCCGA
CACCCACCCTTCGTTTGCAAGCATTGCGGCTGTTTTCTCGCCGTGCCCCC
TCCCTCACCCCCCTCTTGGATGGAGCTCGTCCTTTGCGCGACTCGCCGAA
CGCCGTGGCGTTTCGCGCGCCTGGCGATAA
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