mRNA_P-littoralis_Contig849.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig849.20.1
Unique NamemRNA_P-littoralis_Contig849.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: D8LC26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 1.090e-114
Identity = 173/190 (91.05%), Postives = 184/190 (96.84%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEEE 570
            MKTLLATRYVTIPEGV ++VKSR+VTVTGPRGELVQ+FKH+NLD+QK+G +KLRVDLWFG RKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRR  VELAPGV+YVRT+DVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI QE+E
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRR--VELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEDE 188
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A836CAK5_9STRA (Ribosomal protein L6, alpha-beta domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK5_9STRA)

HSP 1 Score: 288 bits (737), Expect = 5.990e-92
Identity = 143/190 (75.26%), Postives = 164/190 (86.32%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKA-GSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEE 567
            MKT+LATRY+ IPEGV ++VKSR+V+V GPRG L +NFKH+NLD+QKA G  KLRVDLWFG RKQLACIRT+CSH+EN+ITGVTKG+LYKMRFCYAHFPINV++T +TVEIRNFLGEKRVRR V  L  GV+YVR+  +KDQIELSGNDI  VS  AARI Q+ +VK KDIRKFLDGIYVSEK NI QEE
Sbjct:    1 MKTVLATRYIDIPEGVKVDVKSRVVSVEGPRGSLTRNFKHLNLDIQKADGGKKLRVDLWFGNRKQLACIRTVCSHIENLITGVTKGFLYKMRFCYAHFPINVTLTDRTVEIRNFLGEKRVRRVV--LCDGVDYVRSTTIKDQIELSGNDIADVSNMAARISQACTVKNKDIRKFLDGIYVSEKTNIVQEE 188
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BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7S2XV97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV97_9STRA)

HSP 1 Score: 275 bits (704), Expect = 5.170e-87
Identity = 137/182 (75.27%), Postives = 160/182 (87.91%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 546
            MKT+LATR+V IP+GV L VK+R V+V GPRG+L + FKH +LDM+  G +KLRVDLWFG RKQLACIRTICSH+ENMITGVTKG+LYKMRF YAHFPINV++  +TVEIRNFLGEKRVRR  VEL  GV YVRT++VKDQIEL+GND+ AVS+TAA+IQQST+VK KDIRKFLDGIYVS+K
Sbjct:    8 MKTILATRFVEIPDGVQLNVKARTVSVEGPRGKLERAFKHQSLDMRLVGKNKLRVDLWFGNRKQLACIRTICSHIENMITGVTKGFLYKMRFVYAHFPINVTLVDRTVEIRNFLGEKRVRR--VELMEGVTYVRTSNVKDQIELTGNDLTAVSLTAAQIQQSTTVKNKDIRKFLDGIYVSQK 187
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BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7S2GU27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GU27_9STRA)

HSP 1 Score: 268 bits (684), Expect = 4.790e-84
Identity = 128/188 (68.09%), Postives = 162/188 (86.17%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQE 564
            MKT+LA+R + IPEG+++ +K+R VTV GPRGEL +NFKH+++D++K GS  +RVD+WF  R+QLAC+RTICSH++NM  GVT+G+LYKMRF Y+HFPINV+++G TVEIRNFLGEKRVR+  VEL  GV YVR+ADVKDQIELSGNDI AVS+TAARIQQ+T+++ KD+RKFLDGIYVSEK  I  E
Sbjct:    1 MKTVLASRSIEIPEGIDVTIKARNVTVKGPRGELTRNFKHIDMDLKKVGSKFIRVDVWFATRQQLACVRTICSHIDNMFVGVTQGFLYKMRFVYSHFPINVALSGNTVEIRNFLGEKRVRK--VELLEGVNYVRSADVKDQIELSGNDIAAVSLTAARIQQATNIRHKDLRKFLDGIYVSEKGPIEIE 186
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: W7TGP7_9STRA (60s ribosomal protein l9 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGP7_9STRA)

HSP 1 Score: 267 bits (683), Expect = 8.880e-84
Identity = 135/193 (69.95%), Postives = 159/193 (82.38%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDK--------LRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 555
            MK +LAT+ V IPEGV L +KSR VTV GPRGEL + FKH+N+  +  G +K        L+VDLWF  RKQLA IRT+CSH+EN++TGVTKG+LY+MRF YAHFPINVS+T KTVE+RNFLGEKRVRR  VEL PGVEYVR++DVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +I
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRR--VELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7S2U6Z1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Z1_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.040e-83
Identity = 125/190 (65.79%), Postives = 163/190 (85.79%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEEE 570
            MKT+LA+R +TIP+GV +E+K+R V VTGPRGEL ++F HVN+D++K G D+++VDLWF  RK+LAC+RTICSH++NM  GVT G++YKMRF Y+HFPINV++TG+ VEIRNFLGEKRVR+  VEL  GVEYVR++ VKDQIE+SGNDI  VS+TAA+IQQ+T+++ KD+RKFLDGIYVSEK  +  E+E
Sbjct:    1 MKTVLASRTITIPKGVEVEIKARQVVVTGPRGELKRDFSHVNMDLRKVGKDQVQVDLWFATRKELACVRTICSHLDNMFVGVTSGFMYKMRFVYSHFPINVTLTGRNVEIRNFLGEKRVRK--VELLSGVEYVRSSAVKDQIEISGNDIALVSLTAAKIQQATNIRHKDLRKFLDGIYVSEKGRMKGEDE 188
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7S2RBQ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RBQ4_9STRA)

HSP 1 Score: 266 bits (679), Expect = 2.780e-83
Identity = 128/189 (67.72%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEE 567
            MKT+LA+R + IPEG  +E+KSR V VTGPRG L ++FKHVN+D+++ G   +RVDLWF  RK+LAC+RT+CSH+ENM  GV +GYLYKMRF Y+HFPINV++ G+ VEIRNFLGEKRVR+  V+L PGV YVR+ DVKDQIELSGNDI  VS+TAA+IQQSTSV+ KD+RKFLDGIYVSEK  I +E+
Sbjct:    1 MKTVLASRTIEIPEGTEVEIKSRHVKVTGPRGVLERDFKHVNMDVRRCGEKNIRVDLWFANRKELACVRTVCSHIENMFVGVNQGYLYKMRFVYSHFPINVTLAGENVEIRNFLGEKRVRK--VKLGPGVTYVRSDDVKDQIELSGNDIALVSLTAAQIQQSTSVRHKDLRKFLDGIYVSEKGPIPKED 187
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BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7S1U0E8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0E8_9STRA)

HSP 1 Score: 266 bits (679), Expect = 4.470e-83
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEEE 570
            M+ +LATR V IPEGV +E K R VTVTGPRG L + F H+N+DMQK    +L+VDLWFG  KQ ACIRT+CSHVENMITGVTKG+LYKMRFCYAHFPI V+I  + VEIRNFLGEKRVRR  V L  GV+ VRT +VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  I  +E+
Sbjct:   14 MRQILATRSVAIPEGVTVEAKCRTVTVTGPRGSLTRKFGHLNVDMQKISDSELKVDLWFGTLKQRACIRTVCSHVENMITGVTKGFLYKMRFCYAHFPIIVAIEQRNVEIRNFLGEKRVRR--VALLDGVDAVRTDNVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKTTIVLDED 201
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A7R9W890_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W890_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.180e-82
Identity = 129/189 (68.25%), Postives = 154/189 (81.48%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEE 567
            MKT+LA+R + IP+GV  EV +R VT+ GPRG L + FKH+++D++K G   +RVD+WF  RKQLAC+RTICSH+ENM  GVT+G+ YKMRF Y+HFPINVS+ GKTVEIRNFLGEKRVR+  VEL  GV+YVRTADVKDQIELSGNDI  VS+TAARIQQ T+   KD+RKFLDGIYVSEK  I  EE
Sbjct:    3 MKTVLASRTIEIPDGVEFEVTARKVTIKGPRGTLTREFKHIDMDLRKVGKKFVRVDIWFANRKQLACVRTICSHIENMFVGVTQGFCYKMRFVYSHFPINVSLNGKTVEIRNFLGEKRVRK--VELCDGVQYVRTADVKDQIELSGNDIAMVSLTAARIQQCTNTTNKDLRKFLDGIYVSEKGKIEIEE 189
[Close]
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Match: A0A6U3WAV7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3WAV7_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.200e-82
Identity = 124/182 (68.13%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGSDKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 546
            MKT+LA+R + IPEGV++ + +R VTVTGPRG L ++FKH+ +D++K G   +RVD+WF  RKQLAC+RTICSH++NM+ GVT+G+LYKMRF Y+HFPINVS++G TVEIRNFLGEKRVR+  VEL  GV+YVR+ADVKDQIEL+GNDI  VS+TAA+IQQ+T+V+ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRTIAIPEGVDVSINARSVTVTGPRGTLSRDFKHIQMDLKKIGKSSIRVDIWFATRKQLACVRTICSHIDNMMVGVTQGFLYKMRFVYSHFPINVSLSGNTVEIRNFLGEKRVRK--VELLEGVKYVRSADVKDQIELAGNDIALVSLTAAKIQQATNVRHKDLRKFLDGIYVSEK 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig849.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC26_ECTSI1.090e-11491.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAK5_9STRA5.990e-9275.26Ribosomal protein L6, alpha-beta domain-containing... [more]
A0A7S2XV97_9STRA5.170e-8775.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2GU27_9STRA4.790e-8468.09Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
W7TGP7_9STRA8.880e-8469.9560s ribosomal protein l9 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2U6Z1_9STRA2.040e-8365.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2RBQ4_9STRA2.780e-8367.72Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1U0E8_9STRA4.470e-8371.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9W890_9STRA1.180e-8268.25Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3WAV7_9STRA2.200e-8268.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig849contigP-littoralis_Contig849:79685..85639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC26
Preferred nameRPL9
PFAMsRibosomal_L6
Model size1611
Max annot lvl2759|Eukaryota
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
Exons4
Evalue1.47e-120
EggNOG OGsCOG0097@1|root,KOG3255@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L6, alpha-beta domain
Ec32 orthologEc-20_004190.1
DescriptionrRNA binding
Cds size573
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791713.4145489-UTR-P-littoralis_Contig849:79684..807221680791713.4145489-UTR-P-littoralis_Contig849:79684..80722Pylaiella littoralis U1_48UTRP-littoralis_Contig849 79685..80722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791713.4326208-CDS-P-littoralis_Contig849:80722..808291680791713.4326208-CDS-P-littoralis_Contig849:80722..80829Pylaiella littoralis U1_48CDSP-littoralis_Contig849 80723..80829 -
1680791713.4441366-CDS-P-littoralis_Contig849:82673..827711680791713.4441366-CDS-P-littoralis_Contig849:82673..82771Pylaiella littoralis U1_48CDSP-littoralis_Contig849 82674..82771 -
1680791713.4602878-CDS-P-littoralis_Contig849:83310..834861680791713.4602878-CDS-P-littoralis_Contig849:83310..83486Pylaiella littoralis U1_48CDSP-littoralis_Contig849 83311..83486 -
1680791713.473099-CDS-P-littoralis_Contig849:85447..856391680791713.473099-CDS-P-littoralis_Contig849:85447..85639Pylaiella littoralis U1_48CDSP-littoralis_Contig849 85448..85639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig849.20.1prot_P-littoralis_Contig849.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig849 80723..85639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig849.20.1

>prot_P-littoralis_Contig849.20.1 ID=prot_P-littoralis_Contig849.20.1|Name=mRNA_P-littoralis_Contig849.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MKTLLATRYVTIPEGVNLEVKSRIVTVTGPRGELVQNFKHVNLDMQKAGS
DKLRVDLWFGKRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPIN
VSITGKTVEIRNFLGEKRVRRQVVELAPGVEYVRTADVKDQIELSGNDIQ
AVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIAQEEE*
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mRNA from alignment at P-littoralis_Contig849:79685..85639-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig849.20.1 ID=mRNA_P-littoralis_Contig849.20.1|Name=mRNA_P-littoralis_Contig849.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5955bp|location=Sequence derived from alignment at P-littoralis_Contig849:79685..85639- (Pylaiella littoralis U1_48)
ATGAAGACCCTGTTAGCCACGCGCTATGTGACCATCCCCGAGGGGGTCAA
CCTCGAGGTCAAGTCTCGCATCGTGACGGTCACCGGACCCCGCGGAGAGC
TGGTCCAGAACTTTAAGCACGTCAACCTCGACATGCAAAAGGCGGGCAGT
GATAAGCTCCGTGTGGACCTGTGGTTCGGAAAGCGCAAACAGGTACTGTC
TGTAGAGAAAACAAGGTTGCTGCTTGGCCTTCTGATGACTGCAGTCACTG
AGGGACGCTCGTGTTGTCGTCCTTTCCTTGTCGGGCTGCTGCGGTCTGCT
TTGTTTTTGATATATCCAAGCTGCAACAGCAGTCAAGCTGTGGTATCGTG
GGTGGTTGTTTTCAAGCGAAATCTGGTCTCCTTCTTTTGAGACGGCGGCG
CACGAATGTACAGACACTAGCGGCACGCTTCCCATCCGACCTTGACCAGC
AAAGCAGTTTTATAGACTTTGCTGAAGGACCTGCTGCTGCATCCCTGCAT
CTTTCGCAGACAGCAGTGTTGCATCATTGCCAGGCAGCAGTCGGTATTCC
AGAAAGTTTGCATCATCGCTTCCTCGTGTTATCTTGGAGAATGCTTCACG
AGTTTAAGATGGCTTATTTACTGACTAATCTAAGAGCCTGTACTGCGGCT
GTCCTGCCTATATACCTCTGTAATCCTCTCCCCTCATCGGTAGCCCCTAT
CTGCACCTGCCAGGCGCGTTTGTAATCGTGCACCTGTCGGATCTAATTGG
TCAGTTTTACGCCGCGTGTGTATTTCCAAGCAAGGCGTGTTGTTCCAACC
AAACGCGCCGCGGAGCGGCGCTGAGGCTCCTTGCGGACTCGGGTCGGCTC
AGGGTCCGGGGTAGGCTTGGGTTGGGTCGAGAGAGGGGTGTAAATTTCAA
GTCGAGCCTCGGTCGAAGTTAAAAAAACGTGCAGCGAGTCAAGGGGTCCA
CAATTGCAAATACACCTGGTGGGTGCAGGTATAGGGTACCCTCCTCATCT
CTAGTGCCGACAGCAGTACTCTTTCGCAAATTTACCTCAAGTGTATACGT
AGTAAAGTCTCTCAAAGGCAGCTTCACACAAGAACCACACCGGAGAACGA
TGCTGGATACACCAAACAAATAGTGGCGTACTCGTAAAAGTATCTCAACA
TCTGGCCTAGCCTCGCGACTACGATGTGAGGTAAGCGGTATACCCCACCA
CGACACTGTTGAGGATCCTCTCGTTTGTCTTCCCAAGGTAGTCAGACGGA
AGCCGGGGGATATGGTAGTACCGGTCTACTCGCAGGACGAAAAAAACGTG
CGTCGAGTGAGGTAGAACCTTACCTTGACCCCAGCACCAAGCACAGACTG
GTGTCTGCTGGTAGGGATGTACTGCGTATGTAAGTGGAGCGCGGGCCGCG
GCAGAGCCCAATTTTTCAGAGGGCTAAATTCTCACGTTCATCAGATCTGA
GGATCGGTTTCTTCGATAACACTTTGTGGTTTCTCACGTGGGCTTCGGTA
TCAAACCTTCAACAGTGTTCCACTTTCAGGGGGTCCTTGTTGGCAACGAG
TTGAAGAGTCAGAGGGAGAATCCACCGCCTACGCCCCTGTCCACGGGTCG
ACACGGTGCCCGGCGCAGCCATCAAATTCCACTGCATCAGCGTCGTTGCT
GCATCCTTTCATCACGGAGTACTGCTGCACGCACATATCATAGACCATGT
AAATTTCATCCGCCACAGCGTAACCCCTCGAGACGAGGAGAGATGAGATC
TGCAGGGAGAAAAAGAGTCTTTGTAGGCGAGGGCCAAGATGTTCACGTTG
TCGATTAACGACCATACCGAACACAGGCTTGGGAGTTGGGACCTCCCTTA
TCGAGGGGACAAAAAGACGCCCTCCCCGGGGCATACTTTCGCCTTGTACC
CGGGCGAACGAAATACAAGCAGATACAGCAACTGTTGGTTTAAGCGCCCC
GTATACAGGTGCCTGGACGGAAATGGTGCGCAATACAACATCAACATTTG
CCATGACATGATATCCGTTTCCTAGTGGTGCGTTTCGGGTATGATTCGCC
GTCACATGGTGCGCCTCTTTGAGAACGCACCCCCGATAAGCCCTCCCCCC
CTTGCTTCTCCGCCTGTCGTCCTCGCCTCGAACGACACCCCCCGCACTCC
CAGCTTGCGTGCATCCGCACCATCTGCTCGCACGTGGAGAACATGATCAC
GGGTGTCACCAAGGGTTACTTGTACAAGATGCGCTTCTGTTACGCCCATT
TCCCCATCAACGTCTCCATCACCGGGAAGACCGTTGAGATCCGCAACTTC
CTCGGCGAGAAGCGCGTGCGCAGGCAAGTGTTGTAAAAATCTGAGAAAAA
AATCAAGAGAGTATCAGAGGAACACCTAACTGGGATGGGGCTCAGCTAGA
TGTGTCGGGTTCCCTCCACGTCGCCCTTCCGGGGGGAAGAGATCAAGTCG
TGACGATACAGGGAGAAAATAGCATGCACGCGACGTGTATGCACTGTACG
GTATGATGTCTGATTTTGTTTCTCATTGCGAAGTATGCTGAGGAAATCGA
AAATAAAACATGAATAGAAGCACGCCCGGCCGATACAAGACTCCATGGGG
TGTGGAGAGATTTTTTCGAGAGGGCTTCGCAGGGGGTACCGACGCGGCGA
CATCAATTGTGCCCCCACTATCGTCTAGAAGTGTGCTGACGGGCTGGGAT
TTTTGCCTGCTTTTGTGGCACCAGTGTGTCGTTGTCTTGCTCTTTGTCTG
ACCGTCGCTTGTTGTTGCCCACCTCCTCCGTCGATTTGCCTCGCGATTCG
GAACTGCGCACAAATAAACGGTGGCCTCAACTGGGTTTCGACGTCCCCGT
TACGGCGTGTTTGTATAGGGTGGAGCTTGCCCCTGGTGTGGAGTACGTGC
GCACTGCGGACGTGAAGGACCAGATCGAGCTTAGCGGCAACGACATCCAG
GCGGTTTCCATGACCGGTGAGGGGCTGCGCATATTCTTTGACGTCTGAAC
ATGCCCTAAAATTCCTGTGTAGCCCGTGTCTCGCGTTTTGGTTATTCGCG
AGTCATTGGCTTTATTTCGTTTTAGTCTGATCGTCGAGACAAACCTTGCT
TTTTGGTGCTGCGTCGGTAGTTACTCGTGGCTTTTCGTTTATTTATTTTT
CTCAAGTTTGGGAAGTTTTTCTCGCTGTTTGATTCTCAGGGTGGGTCCTG
TCAAATTTTTTACCGTATTCAAAATCAAAAACAAAATTGGATTTTGATTT
TGATTCCGTGTTGGGTCCGATCTGCTGCAGCTTGCGTTCGTCCAAAATCA
AAAGCGGATAAAATAAAAAAAAACAGGGGTCACAGACAGGTGGTGTGTGA
TATGAGCATGCCGTGTCTCGATTCCAAGACAAGTGCGGGAGCTGTCGTGC
CTCAAACGAAGAGCACGATGGCGCCCCACGTCACCCTGACTCAGGCGCGT
TGGTAGTTCTTTGTTTGGGATCGATAACTGAAAAATTCGGCAAGAGATGA
GTAAGTACGTGTTGCACATCTGCCCTTTTTTGGAGGTAGCGGCTGTGTCA
GCTACGCGAACAGCAGTTGAGCAACAAACTTCCTGCACACTTCTACACAC
TTGAGTGCTGCTCTCCGGATTCTGGTCGGAATTCGCTCAAACAAAATGAT
CTGTATTCTGCGTGATACCAGCTTTCTCCGGAGCTAGCACATGTGTACAG
CCGGGGTCTACACATTGTGATGTGGTCAGCTAAGCAAACGTATGTAGTGT
GCACCATGTGCTCCCGGAATGCACAGCAAACACCTCTCTGTCGCATATTC
TAGGTCTATTCGTTTTTGAGCCGCGTTTTGGATCTATTGGCGGGAAGGAA
AGTGTTTTTTACTTTCCTTCCCGTTTCGGAAGAATAAAACTGAAATCCAA
AACGTGGTGCGGGCGGATGGATTGTGGACCTATCAGTGACAGATTCCGAG
TTTGATTTTTGATTATTGATTTTTGAATGGGCTCAAAACGCTTTGACAAG
AGCCACCCTCAGGGACAACGTGTTGCAGGCGAAATTACGTTTGCACACGT
GTTGATCTACTTGTATACATGTCTCCGTTTTCCTTGAGAGGAATGGACGG
CACTTGCACGGCTTGTAATGTGAACCCGCGAAGCGAAACACTGGAGCTCT
TTATAGTGGGTGTTTTCGATGCCACCCTCGTGTGTGCAAGAGCCCCTTCG
CGCAGCAGCCTGGCGGGTGATGGCGTCACGCTAGTCACATGCCCCCCGTC
AGCATTTTCCCTCACGCGGCACCTCACGATCAACTTGTTGGGCGTTCAAG
AAACTAAAGCGTTGGCTGTGGCAGCACACGGCAATCATTCTGTGAGCTTG
AACTTCTATCACGCACCACCGCAAGACTTGTTTATTGTATAAGCACACGG
CGGTGGAGGAGATTTCATGAGCCTAAGCGTTCCGCCCCTGGTCCTGAGAC
TATGCTGTGCGAAGGGTGTTTGACGAGACGACGTTGCGCTGTTGCACAGA
GCACATGCCACAACGAGGCCTGAACTTCGCACACCACTGCTGCCCGACCT
GTTCGTTGACGCGGCGTTCTGGTTCAAGAAAATCTCGCGCACGTTGGCGG
GTACTGAGATGGCTTGAGCGTGGGAATCGGGAGGAATCCTTGCGGGCGCG
CCCCGCGGGTCTATTTTTACTTTCTAGTCCTTGTGGCAATTGTGTCCACT
GCGGCAGCGTTCCCCTCGTATTTTTTTCTTGCATGTATTGGTTTTGCGTG
TTGACCCGTCACCCGCCCGCCTGTACCGTTGCCCTACCGTCGCCGTGTTT
GTTTCAACAGCGGCGCGTATCCAGCAGTCCACGTCCGTGAAGCGGAAAGA
TATCCGTAAGTTCCTCGACGGTATCTACGTCAGCGAGAAGCTCAACATCG
CGCAGGAAGAAGAATGAAGCGCGACAGAAGCGCGCCATCCGTAATTAAAA
GCTTGCAACACTCCTTCTTGGCGAAGACGAAAAACAGCTTCTCTCGATTG
TTGGTCTTTTCCCAAAGAACGGTTACCGTAGGAGGAAACGGTTGGCGGCC
CGGCTCGATCATCCTTTGGTTTTCTCCCTTACTGTGGCGTGTCTGGTCGG
CTGCAGGCGTGTCTGTTTGACTGTGCCCGTTGGGGCGCGAAGTTTTACGG
TTTCGGGTTGGCTTTTCGAGGTCGGTGGTCCACCTCGTGTGTTCCTGTTC
GGGGCTTGAACACGAGGTCGGTGGTGAAAAAAAAAACTGAAAAAAGGAAA
GCATATGGAAAGTTTTGGTGCGCTGTATGCTATCCTGATAACGGTAAAAG
CGTTGCCCGACGTGATCAAATCGCCTGTACCTTCGTGTGCGCATTGGCAC
GGTGCAAGCTTCGAGTGAACGATCCGCCTGTCCAGGGCAGGTATGCGTTC
TACTCAAGACGGGGGGGCAAATGTCTCCAACGGTCGTGGCTCTCCGTCGG
CGCCCACTTTTGGCACCAGCAGGAGCGGTGGTTAACCGTACGCACGTTGA
ACGCCCCTTTTTTTGTCCCGCCGTTTGTGGCAATTTACGCACGCGTTTGG
GCATACATCTGCCGCTTTTGAGCCGCTGTGCTTGAGGAAAGGGAGAGTTC
ACGACGAGAGCACACAGCAGGCACACGTACAAATGTAGCGGCCGTGACCG
ATCTTGTCGATCATGACACTGCAGGACTCTTCGAACAGCATTGCCGTCTC
CTCTCGACCGTTTAATACCAAACACAACAAAAACAAAGAACGAAAGACTC
GTACGGTCATGCACATGGAAGCGTGCTACCGGTAGGCGCAAGGAGAACCG
AGTGAACTTTCGATTCACGCGTTTCTTTGCCGGGAAAGTGGTGACATGGA
CGTTGTTCCCGGCGGAATTCAGGTGTAGGAAGCCATCCCTATCACGATCA
CTCATTGTTTTTTATACCGCGCGGCTGAAGTACATCGCGCCGAAAACGGC
TGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig849:79685..85639-

>mRNA_P-littoralis_Contig849.20.1 ID=mRNA_P-littoralis_Contig849.20.1|Name=mRNA_P-littoralis_Contig849.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig849:79685..85639- (Pylaiella littoralis U1_48)
ATGAAGACCCTGTTAGCCACGCGCTATGTGACCATCCCCGAGGGGGTCAA
CCTCGAGGTCAAGTCTCGCATCGTGACGGTCACCGGACCCCGCGGAGAGC
TGGTCCAGAACTTTAAGCACGTCAACCTCGACATGCAAAAGGCGGGCAGT
GATAAGCTCCGTGTGGACCTGTGGTTCGGAAAGCGCAAACAGCTTGCGTG
CATCCGCACCATCTGCTCGCACGTGGAGAACATGATCACGGGTGTCACCA
AGGGTTACTTGTACAAGATGCGCTTCTGTTACGCCCATTTCCCCATCAAC
GTCTCCATCACCGGGAAGACCGTTGAGATCCGCAACTTCCTCGGCGAGAA
GCGCGTGCGCAGGCAAGTGGTGGAGCTTGCCCCTGGTGTGGAGTACGTGC
GCACTGCGGACGTGAAGGACCAGATCGAGCTTAGCGGCAACGACATCCAG
GCGGTTTCCATGACCGCGGCGCGTATCCAGCAGTCCACGTCCGTGAAGCG
GAAAGATATCCGTAAGTTCCTCGACGGTATCTACGTCAGCGAGAAGCTCA
ACATCGCGCAGGAAGAAGAATGA
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