mRNA_P-littoralis_Contig848.16.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 610 bits (1572), Expect = 3.420e-186 Identity = 318/520 (61.15%), Postives = 386/520 (74.23%), Query Frame = 3
Query: 216 PLVIRHEIVFNASRGPDSRIGELKDWIVASATEKQAFSFPAVGVTVPSNWVGAIAAVEALRQEKGTPYVMWGEAVDAVQRQFQK--------QRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDSSPSRTDMIHLDPRWLIELVRRVVDPNLVDKTAESQRKIWDELGSYSDERGHYTPDGYSNLRKAHTSFITQGRLNRGYLRFLWLYRELEDKDDYHPGVQLDDDSFESMLGIMIKYLFIYPASGKSSNDEEVYIVPARLPEYGNEKVLKESIGLGEVVVGTIAHFRRTHVPTGIIGRFLAFSASKIVSAGECWQHGAHVEWKQGSHVHAVLLCETTVGENEVLPA---IPAISICVKGQSAEAKGVLWEVKTELENLLRDSVHGYPGLALPAFEDLPIFISDEFQRHLRPYLDIQFADMATILNKISHDAVRMFQAAFPSCCDPNEYPYPRLVLFKPVEDAGVSETHSEKGGSGAIQLRETWDRWTRLLRSGRRCDFDLVFLCERDFSPIPCGP 1742
PL++ H VF AS G D+RIG L DWI+ A EK +FSFPAV +P+ WV AIAAVEAL +EKGTPYV+WG+AV A QR FQ+ +RN+ LS EDAA LKEAMKHREAEGGVILSL +SSP+++DMIH+DPRWLIELVRRV D NLVDK + Q KI EL Y R T GY NL + H FI QGRLNR YLRFLW++R+LE + DY G QLD D+F+SM+ MIKYLFIYP+ G+ SN E+ +IVPARLPE+GN+ +L+ESIGLGEVVVG A F R+H PTGIIGRFLAF++S+ ++G+CWQHGAH++WK+ S+ H VLLCETT+ E +++P PAI+ICVKG++AEAKGVL EV +L +LL+D++HGYPGL LP FE+L I SD+FQ H YL Q +A IL ++VRMF+AAFPS DP E PYPRLVL KPVE + ET +E+ +GAIQLR TWDRW L RSG CDF LVFLCERDFS IPCGP
Sbjct: 1470 PLIL-HPRVFCASLGLDNRIGRLSDWIIGVAPEKISFSFPAVATILPAAWVDAIAAVEALHKEKGTPYVLWGDAVRAFQRYFQEKHKEEGKEERNKPLSDEDAATNLKEAMKHREAEGGVILSLRDESSPAQSDMIHVDPRWLIELVRRVTDHNLVDK--KKQNKILQELLEYDRTRPD-TLSGYKNLCETHACFIRQGRLNRDYLRFLWVHRKLEVEGDY-AGAQLDKDAFDSMVDTMIKYLFIYPSHGECSNAEDCHIVPARLPEHGNDNILEESIGLGEVVVGKTAWFLRSHAPTGIIGRFLAFTSSRFEASGKCWQHGAHIQWKKDSNEHDVLLCETTI-EKDIIPGQSTFPAIAICVKGKTAEAKGVLREVGEQLLSLLQDNIHGYPGLRLPIFEELNITQSDQFQVHFERYLATQ---LAKILEDTRRESVRMFRAAFPSYGDPVELPYPRLVLLKPVETTSIQETQAEESVNGAIQLRRTWDRWIDLCRSGGSCDFVLVFLCERDFSEIPCGP 1980
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE) HSP 1 Score: 493 bits (1269), Expect = 2.170e-156 Identity = 277/525 (52.76%), Postives = 348/525 (66.29%), Query Frame = 3
Query: 201 QRFFEPLVIRHEIVFNASRGPDSRIGELKDWIVASATEKQAFSFPAVGVTVPSNWVGAIAAVEALRQEKGTPYVMWGEAVDAVQRQFQK--------QRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDSSPSRTDMIHLDPRWLIELVRRVVDPNLVDKTAESQRKIWDELGSYSDERGHYTPDGYSNLRKAHTSFITQGRLNRGYLRFLWLYRELEDKDDYHPGVQLDDDSFESMLGIMIKYLFIYPASGKSSNDEEVYIVPARLPEYGNEKVLKESIGLGEVVVGTIAHFRRTHVPTGIIGRFLAFSASKIVSAGECWQHGAHVEWKQGSHVHAVLLCETTVGENEVLPA---IPAISICVKGQSAEAKGVLWEVKTELENLLRDSVHGYPGLALPAFEDLPIFISDEFQRHLRPYLDIQFADMATILNKISHDAVRMFQAAFPSCCDPNEYPYPRLVLFKPVEDAGVSETHSEKGGSGAIQLRETWDRWTRLLRSGRRCDFDLVFLCERDFSPIPCGP 1742
QR F +I H VF AS G D+R+ L DWI+ +TEK +FSFPAV +PS WV +WG+AV A QR FQ+ +RN+ LS E+A++ LKEAMKHREAEGGVILSL +SSP+++DMIH+DPRWLI+LVRRV D NLVDK +++ +I EL Y R T GY NL + HT FI QGRLNR YLRFLW++R+LE + Y GVQL++D+F+SM+ MIKYLFIYP+ G+ S E YIVPARLPE G + VL+ESIGL EVVVG A F R+H PTGIIG FLAF++S+ ++GECWQHGAH++WK+ S+ H +LLCETT+ E +++P +PAI+ICVKG++AEAKGVL EV +L +LL+D +H + F+R+L L ATIL ++VRMF+AAFPS + E YPRLVL KPVE + ET E SGA +LR TWDRW L SG CDF LV LCERDFS IPCGP
Sbjct: 36 QRGFTLPLILHPRVFRASLGLDNRVNRLSDWIIDVSTEKISFSFPAVATILPSAWV------------------LWGDAVKAFQRYFQEKHKEEREDERNKPLSDEEASSNLKEAMKHREAEGGVILSLREESSPAQSDMIHVDPRWLIDLVRRVTDHNLVDK--KNEHEILKELLEYGRTRPD-TLSGYKNLCETHTCFIRQGRLNRKYLRFLWVHRKLEVEGGY-AGVQLENDTFDSMVDTMIKYLFIYPSHGECSKAEGFYIVPARLPEIGKDNVLEESIGLDEVVVGKTAWFLRSHAPTGIIGCFLAFTSSRFEASGECWQHGAHIQWKKDSNEHDMLLCETTI-EKDIIPGPGTLPAIAICVKGKTAEAKGVLREVGEQLLSLLKDVIHVH------------------FERYLATKL-------ATILEDTRRESVRMFRAAFPSYGEHVELLYPRLVLLKPVETTSIQETQVESV-SGAKKLRRTWDRWIDLCWSGGSCDFVLVILCERDFSEIPCGP 511
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.590e-73 Identity = 192/534 (35.96%), Postives = 270/534 (50.56%), Query Frame = 3
Query: 213 EPLVIRHEIVFNASRGPDSRIGELKDWIVASATEKQA---FSFPAVGVTVPSNWVGAIAAVEALRQEKGT-PYVMWGEAVDAVQRQFQKQRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDSSPSRTDMIHLDPRWLIELVRRVVDPNLVDKTAESQRKIWDELGSYSDERGHYTPDGYSNLRKAHTSFITQGRLNRGYLRFLWLYRELEDKDDYHPGVQLDDDSFESMLGIMIKYLFIYPASGKSSNDEEVYIVPARLPEYGNEKVLKESIGLGEVVVGTIAHFRRTHVPTGIIGRFLAFSASKIVSAGECWQHGAHVEWKQGSHVHAVLLCETTVGE---NEVLPAIPAISICVKGQSAEAKGVLWEVKTELENLLRDSVHGYPGLALPAFEDLPIFISDEFQRHLRPYLDIQFA-----------------DMATILNKISHDAVRMFQAAFPSCCDPNEYPYPRLVLFKPVEDAGVSETHSEKGGSGAIQLRETWDRWTRLLRSGRRCDFDLVFLCERDFSPIPCGP 1742
EPLV+ H VF S P S + EL+ WIV +A+ ++ F+FPAV TV W+ A A++ L KGT P V+W AV+ +R K A DA L AM+HREAEGGV+LSL DS+P +DM+HLDP WLIELVRR+ D NLVDK + + + L Y+ +G + L H + GRLNR YLRFLW++R++E P V L D FES++ M + L +Y A D + +VPARL EYG++++ L +V+ F + + P GI+GRFLA+SA ++ GECWQHGA +K + V L E+ V E + + +++ ++G +A VL E++ LE+L+ DS +GYPGL P + I L LD + + K+ ++ + D + YPRLVL +P + TH IQ R WDRWT+ L F + FLC D S +PCGP
Sbjct: 493 EPLVL-HGNVFKVSLAPTSVV-ELRQWIVKAASGRECPTGFNFPAVDQTVSKAWIEAYDAMDVL---KGTAPCVLWSRAVEEFRR---KMSGIPPVAGDAGKVLLRAMQHREAEGGVLLSLADDSAPVASDMLHLDPSWLIELVRRLADHNLVDKDKKKRGSLEQGLRVYAKRQGLAA----APLFDIHNVYCRSGRLNRAYLRFLWMHRKIEGPG---PTVDLTDPEFESIVSTMERLLVMYTA-----RDADNLVVPARLQEYGDQRIPDR---LTNMVLKIECSFGQVYPPPGIVGRFLAWSAQQVADYGECWQHGAFFSYKYQYARYDVFLYESEVEEAHQDGTVDMFAGLTLGIQGPPPQAAEVLEELRKSLESLVSDSAYGYPGLVGPMYFRPAEEIESSLLVRLGSVLDXXXXXXXXXXXXXXXXXXXXXSLEETVRKLGGIVTQLLEQDLLPASD-EQSAYPRLVLVRPELETAEDMTHER------IQ-RAGWDRWTKALSEMGFHKFRVHFLCGHDLSEVPCGP 995
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.430e-23 Identity = 113/436 (25.92%), Postives = 187/436 (42.89%), Query Frame = 3
Query: 192 VARQRFFEPL---VIRHEIVFNASRGPDSRIGELKDWIVASATE-KQAFSFPAVGVTVPSNWVGAIAAVEALRQE------------------------KGTPYVMWGEAVDAVQRQFQKQRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDSSPSRTDM-------IHLDPRWLIELVRRVVDPNLVDKTAESQRKIWDELGSYSDERGHYTPDGYSNLRKAHTSFITQGRLNRGYLRFLWLYRELE---DKDDYHPGVQLDDDSFESMLGIMIKYLFIYPASGKSSNDEEVYIVPARLPEYG----NEKVLKESIGLGEVVVGTIAHFRRTH-VPTGIIGRFLAFSASKIVSAGECWQHGAHVEWKQGSHVHAVLLCETTVGENEVLPAIPAISICVKGQSAEAKGVLWEVKTELENLLRDSVHGYPGLAL 1370
V R +EPL V++ + N S EL++ I A +SFP+V VP + A+A +EA+R+ +G P+V++ EA+ ++ A + A A+K E +G ++L+ D DM IH++P W +L+RR+VD L+D Q K+ D + P +L K H F G LNR Y+RFLW R+LE + P +++ ++ +++ ++ F++ + +E+ YIVP+ LP++ + K L E + +G + F H VP G+I R LA+ CW+ G +K+ H VLL E + A+ +A L +V TEL L+ D+ +G+PG+ L
Sbjct: 226 VQDNRRYEPLRVVVVKELLALNLSPSGGVTTAELREHIEGVAYGVHDGYSFPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLEVAGEKPMFGGKATEGARVFLAAIKLHEVQGAILLT-RADGGGEMEDMASEEHLVIHMNPAWFADLIRRIVDVRLLDPAQARQEKVADLIK-------RQPPASVGDLSKQHHRFFLAGELNRRYMRFLWKDRDLELGPASPNTAPPLEMSEEDITTIVESLLDVRFMF----RVRQNEDHYIVPSCLPDHVGCDMDPKKLME-LEVGGAIFSRRLEFVGAHSVPPGLIPRLLAWCGQGDERITACWKRGVCFSFKE----HLVLLYE----HRDAGRAVIECHAMGSAHDEKAWRTLEDVVTELGQLVGDAKYGFPGVGL 640
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.490e-17 Identity = 107/443 (24.15%), Postives = 187/443 (42.21%), Query Frame = 3
Query: 324 FSFPAVGVTVPSNWVGAIAAVEALRQ-----------------------EKGTPYVMWGEA------VDAVQRQFQKQRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDSSPSRTDM---------IHLDPRWLIELVRRVVDPNLVDKTAESQRKIWDELGSYSDERGHYTPDGYSNLRKAHTSFITQGRLNRGYLRFLWLYRELE----DKDDYHPGVQLDDDSFESMLGIMIKYLFIYPASGKSSNDEEVYIVPARLPEY-GNEKVLKESIGL---GEVVVGTIAHFRRTHVPTGIIGRFLAFSASKIVSAGECWQHGAHVEWKQGSHVHAVLLCETTVGENEVLPAIPAISICVKGQSAEAKGVLWEVKTELENLLRDSVHGYPGLAL-----------PAFEDLPIFISDEFQRHLRPYLDIQFADMATILNKIS 1481
+SFP+V VP + A+A +EA+R+ ++G P++++ EA V + F E A AA TL E G IL D + DM IH++P W +L+RR+VD L+D Q K+ + + S P + L K H F G +++ Y++FLW R+LE P ++ +++ +M+ ++ F++ + ++++ YIVP+ LP++ G K+ +GL G + + VP G+I R LA+ + CW+ G + + H VLL E E ++ + +A G L +V EL L+ D +G+PG+ L + +L +S F L+ ++++ F ++A N I+
Sbjct: 442 YSFPSVNSEVPEPHLLAVATLEAVRRGATLRGSGGDPAEVVRRLDGEKLDEGQPFILFPEALSLFLEVAGEKSLFGGNATEGEQAFLAAITLHERQ-------GAILVTRADGGGEKEDMKPASEQHLVIHVNPAWFADLIRRIVDVRLLDPA--QQEKLAEVIKRQS-------PASVAELSKQHGRFFLAGEVSKRYMKFLWKERDLELGPASPSLAAPPFEMSEETITTMVESLLAVRFMF----RVRHNKDHYIVPSCLPDHVGCTVDAKKLLGLDVGGAIFSRKLQLGGEQPVPPGLIPRLLAWCSQGDARITTCWKRGVCFAFNRK---HLVLLYEH---RKEAGRSVIECHAMGSAHNEKAGGTLDDVVAELRRLVGDPKYGFPGIWLFFDGGVEHQKATSAGELDKLLS-RFAGELKDHMNVNFKELARKSNVIA 857 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig848.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig848.16.2 >prot_P-littoralis_Contig848.16.2 ID=prot_P-littoralis_Contig848.16.2|Name=mRNA_P-littoralis_Contig848.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=464bp MWGEAVDAVQRQFQKQRNEALSAEDAANTLKEAMKHREAEGGVILSLHHDback to top mRNA from alignment at P-littoralis_Contig848:96542..102947- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig848.16.2 ID=mRNA_P-littoralis_Contig848.16.2|Name=mRNA_P-littoralis_Contig848.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6406bp|location=Sequence derived from alignment at P-littoralis_Contig848:96542..102947- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig848:96542..102947- >mRNA_P-littoralis_Contig848.16.2 ID=mRNA_P-littoralis_Contig848.16.2|Name=mRNA_P-littoralis_Contig848.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1392bp|location=Sequence derived from alignment at P-littoralis_Contig848:96542..102947- (Pylaiella littoralis U1_48)back to top |