mRNA_P-littoralis_Contig120.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.17.1
Unique NamemRNA_P-littoralis_Contig120.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.17.1 vs. uniprot
Match: A0A6H5KZY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.800e-5
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  139 GRMPSKCNHVGCTKRPSFGVAGIKTAEFCTGHAEGGMVNVVRKKCTH 279
            G+ P  C   GCT+RPS+G A  KTAEFC+ H++  M+NVV K+C H
Sbjct:  111 GKRPLFCQEDGCTRRPSYGNASSKTAEFCSKHSKPAMINVVGKRCGH 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZY0_9PHAE3.800e-553.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:125631..129560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3257
Hectar predicted targeting categoryother localisation
Exons2
Cds size2232
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789513.7552335-UTR-P-littoralis_Contig120:125630..1265111680789513.7552335-UTR-P-littoralis_Contig120:125630..126511Pylaiella littoralis U1_48UTRP-littoralis_Contig120 125631..126511 -
1680789513.7933593-UTR-P-littoralis_Contig120:129416..1295601680789513.7933593-UTR-P-littoralis_Contig120:129416..129560Pylaiella littoralis U1_48UTRP-littoralis_Contig120 129417..129560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789513.7683482-CDS-P-littoralis_Contig120:126511..1265641680789513.7683482-CDS-P-littoralis_Contig120:126511..126564Pylaiella littoralis U1_48CDSP-littoralis_Contig120 126512..126564 -
1680789513.7801116-CDS-P-littoralis_Contig120:127237..1294161680789513.7801116-CDS-P-littoralis_Contig120:127237..129416Pylaiella littoralis U1_48CDSP-littoralis_Contig120 127238..129416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.17.1prot_P-littoralis_Contig120.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 126512..129416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.17.1

>prot_P-littoralis_Contig120.17.1 ID=prot_P-littoralis_Contig120.17.1|Name=mRNA_P-littoralis_Contig120.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=744bp
MPSKCNHVGCTKRPSFGVAGIKTAEFCTGHAEGGMVNVVRKKCTHRRGCT
KWPSFGVTGTKTAEFYSGHAKDGMVNVVSKKCSHRGCTKGANFGVAGSTT
AEFCFGHAKDEMVNLVSKKCPHRGCTKKPSYGVVDTNTAEFCFGHAEDGM
VDVHSDRCTHRGCTKRRRYGVAGTKTAEFCSGHAKDAMVNVVDKKCAQLG
CIKTPSYGVTGTKTGEFCPEHAKDGMVDVISKKCTHRGCTKRPSYGVAGT
KTAEFCAGHSEDGMVNVIRKECTHRSCTKTPSFGVAGSTTREFCSEHAKD
GMVNVVSKKCTHRGCTKTPSYGVAGTKTREFCSGHAKDGMVDVISKKCTH
RGCTKKPGYGVAGTKTAEFCAGHSKDGMVDVVRKECAHRGCTKTPSFGVS
GSTTREFCSEHAKDGMVNVVSKKCTHHGCTKTPSYGVAGTKTREFCLGHA
KDGMVDVVGKKCTHRGCTKTPSYGVAGTKTAEFCLGHSKDGMVNVISKKC
THRGCTKQPSFGVSGSTAREFCSGHAKDGMVEALSKKCTHRGCTKRRSYG
VAGGTRTVCPQHAEEGMVNLCSKAVPGFRGRSGGTLGCGAIGLDGGTVRR
AGVAGKRKDRSPPSIQTRTSAGTREDSKRTRQGPFHTTVTSAPIKTALDI
RYTAVEDGSISEPDDHDAVKREVAVFSKMDPRGTLRREAIAGKLATPVEY
GWCAEPESTVKEEVGVIFPSKNAAARGQVNRRGGESRTRETRR*
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mRNA from alignment at P-littoralis_Contig120:125631..129560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.17.1 ID=mRNA_P-littoralis_Contig120.17.1|Name=mRNA_P-littoralis_Contig120.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3930bp|location=Sequence derived from alignment at P-littoralis_Contig120:125631..129560- (Pylaiella littoralis U1_48)
CCAATTTCCAATTATTTCTTATTTCAGCATTTCAGCTATTTTGGGAGGGA
CAGAGACAGGGAAGGAGGAGCAGGAGCGTGCACGCCGTACCCCAGCAGGT
CTCTCCCAGAGGTCGAGCCTACTGTCAATTTTTTTCCAGGCAGGATGCCG
AGCAAGTGCAACCACGTTGGTTGCACCAAACGGCCGAGCTTCGGTGTGGC
AGGTATCAAGACGGCGGAATTCTGCACTGGACACGCCGAGGGCGGGATGG
TGAACGTCGTCAGGAAGAAGTGCACCCACCGCCGTGGCTGCACCAAATGG
CCGAGCTTTGGTGTGACAGGTACCAAGACGGCGGAGTTCTACTCTGGGCA
CGCCAAGGACGGAATGGTGAACGTTGTCAGCAAAAAGTGCAGCCACCGCG
GCTGCACAAAGGGAGCGAACTTTGGTGTGGCAGGTAGCACGACGGCGGAG
TTTTGCTTTGGGCACGCCAAGGACGAGATGGTGAACCTTGTCAGCAAGAA
GTGCCCCCACCGGGGTTGCACGAAGAAGCCGAGCTACGGTGTGGTAGATA
CAAACACGGCGGAGTTTTGCTTTGGGCACGCTGAGGACGGAATGGTGGAC
GTCCACAGCGATAGGTGCACCCACCGTGGCTGCACCAAGCGACGGAGGTA
TGGCGTGGCGGGCACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGG
ACGCAATGGTGAACGTTGTAGACAAGAAGTGCGCTCAACTTGGCTGCATC
AAGACGCCCAGCTATGGTGTGACAGGTACCAAGACGGGTGAGTTCTGCCC
TGAGCACGCCAAGGACGGTATGGTGGACGTTATCAGCAAGAAGTGCACCC
ATCGGGGCTGCACCAAGCGGCCGAGCTACGGTGTGGCAGGCACCAAAACG
GCGGAGTTCTGCGCTGGTCACTCCGAGGACGGGATGGTGAACGTCATCAG
AAAGGAGTGCACCCACCGTAGTTGCACCAAGACGCCGAGCTTTGGTGTGG
CAGGTAGCACGACGAGGGAGTTCTGCTCTGAACACGCCAAGGACGGGATG
GTGAACGTTGTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGACGCC
CAGCTATGGTGTGGCAGGCACCAAGACGAGGGAGTTCTGCTCTGGGCACG
CTAAGGACGGGATGGTGGACGTTATCAGCAAGAAGTGCACCCATCGGGGC
TGCACGAAGAAGCCGGGCTATGGTGTGGCAGGCACCAAGACGGCGGAGTT
CTGCGCTGGGCACTCCAAGGACGGGATGGTGGACGTCGTCAGGAAGGAGT
GCGCTCACCGTGGCTGCACCAAGACGCCGAGCTTTGGTGTGTCAGGTAGC
ACGACGAGGGAATTCTGCTCTGAACACGCCAAGGACGGGATGGTGAACGT
TGTCAGCAAGAAGTGCACCCACCATGGCTGCACCAAGACGCCCAGCTATG
GTGTGGCAGGTACCAAGACGAGGGAGTTCTGCTTAGGGCACGCTAAGGAC
GGGATGGTGGACGTTGTCGGCAAGAAGTGCACCCATCGGGGCTGCACCAA
GACGCCCAGCTATGGTGTGGCAGGTACCAAGACGGCAGAGTTCTGCTTAG
GGCACTCCAAGGACGGGATGGTGAATGTTATCAGCAAGAAGTGCACCCAC
CGTGGCTGCACTAAGCAGCCGAGCTTTGGTGTGTCAGGTAGCACGGCGAG
GGAGTTCTGCTCTGGACACGCCAAGGACGGCATGGTGGAAGCCCTCAGCA
AGAAGTGCACCCACCGTGGCTGCACCAAGCGGCGTAGCTATGGCGTTGCC
GGCGGCACTCGAACGGTCTGCCCACAACACGCTGAAGAAGGCATGGTTAA
TCTCTGTTCCAAGGCAGTACCTGGTTTCCGCGGTAGAAGCGGCGGCACAC
TAGGATGTGGGGCCATAGGGCTGGATGGGGGCACCGTCCGCCGTGCTGGT
GTCGCTGGAAAGAGAAAGGATCGCTCTCCTCCATCTATCCAGACGAGGAC
ATCCGCCGGCACGAGAGAGGACAGTAAGCGAACACGCCAGGGGCCCTTCC
ACACGACTGTGACTTCGGCCCCAATCAAAACGGCCTTAGATATACGCTAC
ACCGCAGTTGAAGACGGTTCGATATCGGAGCCTGACGACCACGATGCGGT
GAAGCGGGAGGTGGCGGTCTTTTCCAAGATGGACCCGAGGGGAACTTTAC
GACGTGAAGCAATTGCAGGAAAACTTGCCACACCCGTGGAATACGGTTGG
TGTGCTGAGCCAGAATCTACGGTGAAGGAGGAAGTGGGAGTCATTTTCCC
ATCGAAAAACGCGGCCGCTAGAGGTGAGAGTTGTGAAGCAATCATCCCTG
CTCGGTGGCAGCCCCATATCACATGTTACCCCAATTTTGCCACTTTTCTC
GCGTTGCCTGTGATTCTGTGCTCGTGTCGAATAGAATGGGAGGCGGGCAG
CTCCTTGCTTTCTCTGTGGTTGTTTTGTTTGGTGTACTAGTATAGCTTCC
ACAACTCTGTGAGACAAGGCATAACCCATGCTGTGTTGGTGAAGAGAGAA
AAACTCGTAGAAGACCGACATGCGTGTGTTGCTTACTGTGCCATGCCCTG
GGGGAAATGTTTCGAAACCCGCCGTGTATCACGCGGTTGATTGATTATTT
TTCCGCTGCATTCTCACAGAGTCGTTTTCAGATTGCCAGTTGGGCATTCT
TTGAAGTATTATGTATTACTATTCTCCCAATGAGACACCTTTCGCGCACC
ACCTCAAGTCTATTCTCTCGTGGCCTGCGGTCTGGACGCTACTCGGGTTT
TCTGGAGGTCTTGGTGGGCACAATACATGCTGCTAGTTTACAGCACCAGT
GCTGGCATCTACAGCAGTTGTGACGAAATCGATATCATTGCAGTACATCA
CCGCCAAGATGCTACAGCTGTACCTGATGGCCACTGCCTTTAACTGAATC
TCCTGCTCTTATCGTACTTGGTATTTCGATGCGTTACTTGAAACAGGTCA
GGTCAACCGGAGGGGGGGCGAGAGCCGAACGAGAGAGACGCGGAGGTAGC
ACGGTTGTACCTTTGAAGTGATGAACACCGCGACGGACACCTTTACCTGT
GGGCGGTATTTTTGTGGACGGCTCTTTTGCAGCACTTCGTGCCAACAACC
TTCCATGCTACAGCAGTACCATCTACCGATGCAGGAAGGTGTCAGGCTTC
GGCGTCTAGGGATTAGCGTTCGTTTGTGGCGCCACCAACTCAACAATTGA
TCTCTAGGCTGCTGTTTGAGCTTTCAGGGAAGGGGAAAAACGTCCGATAC
TGTTTGATTTCCTGTAATTGCACTTTTTATTTCGCATGAAAGGTGTATCG
ATTTTGAACCGTGGTTCATCACATGATTCGATTGATTGGAACTATAGGGT
ACTCAGTTGTTGTTTTGGAGGAATCGAGTCTTCGTAAACATCATCCACCC
ATGACGGAGGTTTTTTCTGCGGTCAACGAAGGTACGGGGGAAGCGGCAGG
CCGAGGACATAGCAAGGCATGCACCTGATGGGTTGGTGCAGGATGGGCAT
CTTGCGAGAGCAGGTCGGGTTGTTTTTGACGGTTGGCCGATCCCTTTCCG
TCCGCGCCTCTTTGGCGTTTGCCTCGTCTTGGCTGTCTTGTTTTCGTTTA
TTCCAGGTGTGACCCGATGTTGGAAACTGAAAACAATCATGTTTCACGGA
CAGTCGGACAACATTTGTACGTGCACGTCGTCTCGGTGGTCTAGTGGTTC
CCTCGGTGGCCTTCTAGCGGTATTGTTGCATTGTCGCAGGTTCGATTTTT
CTGCGACTTTAAATTGGAAAGCTTTTTTTTCGTGAGTAAACAAGAAAAGG
GGGAAGACATTGCTGATTCTTTGCTTGCATTAAAAATCAGAGGCAAGCAC
CGCAGGAGCAAAGGAGTGGGCAGTAAAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:125631..129560-

>mRNA_P-littoralis_Contig120.17.1 ID=mRNA_P-littoralis_Contig120.17.1|Name=mRNA_P-littoralis_Contig120.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2232bp|location=Sequence derived from alignment at P-littoralis_Contig120:125631..129560- (Pylaiella littoralis U1_48)
ATGCCGAGCAAGTGCAACCACGTTGGTTGCACCAAACGGCCGAGCTTCGG
TGTGGCAGGTATCAAGACGGCGGAATTCTGCACTGGACACGCCGAGGGCG
GGATGGTGAACGTCGTCAGGAAGAAGTGCACCCACCGCCGTGGCTGCACC
AAATGGCCGAGCTTTGGTGTGACAGGTACCAAGACGGCGGAGTTCTACTC
TGGGCACGCCAAGGACGGAATGGTGAACGTTGTCAGCAAAAAGTGCAGCC
ACCGCGGCTGCACAAAGGGAGCGAACTTTGGTGTGGCAGGTAGCACGACG
GCGGAGTTTTGCTTTGGGCACGCCAAGGACGAGATGGTGAACCTTGTCAG
CAAGAAGTGCCCCCACCGGGGTTGCACGAAGAAGCCGAGCTACGGTGTGG
TAGATACAAACACGGCGGAGTTTTGCTTTGGGCACGCTGAGGACGGAATG
GTGGACGTCCACAGCGATAGGTGCACCCACCGTGGCTGCACCAAGCGACG
GAGGTATGGCGTGGCGGGCACCAAGACGGCGGAGTTCTGCTCTGGACACG
CCAAGGACGCAATGGTGAACGTTGTAGACAAGAAGTGCGCTCAACTTGGC
TGCATCAAGACGCCCAGCTATGGTGTGACAGGTACCAAGACGGGTGAGTT
CTGCCCTGAGCACGCCAAGGACGGTATGGTGGACGTTATCAGCAAGAAGT
GCACCCATCGGGGCTGCACCAAGCGGCCGAGCTACGGTGTGGCAGGCACC
AAAACGGCGGAGTTCTGCGCTGGTCACTCCGAGGACGGGATGGTGAACGT
CATCAGAAAGGAGTGCACCCACCGTAGTTGCACCAAGACGCCGAGCTTTG
GTGTGGCAGGTAGCACGACGAGGGAGTTCTGCTCTGAACACGCCAAGGAC
GGGATGGTGAACGTTGTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAA
GACGCCCAGCTATGGTGTGGCAGGCACCAAGACGAGGGAGTTCTGCTCTG
GGCACGCTAAGGACGGGATGGTGGACGTTATCAGCAAGAAGTGCACCCAT
CGGGGCTGCACGAAGAAGCCGGGCTATGGTGTGGCAGGCACCAAGACGGC
GGAGTTCTGCGCTGGGCACTCCAAGGACGGGATGGTGGACGTCGTCAGGA
AGGAGTGCGCTCACCGTGGCTGCACCAAGACGCCGAGCTTTGGTGTGTCA
GGTAGCACGACGAGGGAATTCTGCTCTGAACACGCCAAGGACGGGATGGT
GAACGTTGTCAGCAAGAAGTGCACCCACCATGGCTGCACCAAGACGCCCA
GCTATGGTGTGGCAGGTACCAAGACGAGGGAGTTCTGCTTAGGGCACGCT
AAGGACGGGATGGTGGACGTTGTCGGCAAGAAGTGCACCCATCGGGGCTG
CACCAAGACGCCCAGCTATGGTGTGGCAGGTACCAAGACGGCAGAGTTCT
GCTTAGGGCACTCCAAGGACGGGATGGTGAATGTTATCAGCAAGAAGTGC
ACCCACCGTGGCTGCACTAAGCAGCCGAGCTTTGGTGTGTCAGGTAGCAC
GGCGAGGGAGTTCTGCTCTGGACACGCCAAGGACGGCATGGTGGAAGCCC
TCAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCGTAGCTATGGC
GTTGCCGGCGGCACTCGAACGGTCTGCCCACAACACGCTGAAGAAGGCAT
GGTTAATCTCTGTTCCAAGGCAGTACCTGGTTTCCGCGGTAGAAGCGGCG
GCACACTAGGATGTGGGGCCATAGGGCTGGATGGGGGCACCGTCCGCCGT
GCTGGTGTCGCTGGAAAGAGAAAGGATCGCTCTCCTCCATCTATCCAGAC
GAGGACATCCGCCGGCACGAGAGAGGACAGTAAGCGAACACGCCAGGGGC
CCTTCCACACGACTGTGACTTCGGCCCCAATCAAAACGGCCTTAGATATA
CGCTACACCGCAGTTGAAGACGGTTCGATATCGGAGCCTGACGACCACGA
TGCGGTGAAGCGGGAGGTGGCGGTCTTTTCCAAGATGGACCCGAGGGGAA
CTTTACGACGTGAAGCAATTGCAGGAAAACTTGCCACACCCGTGGAATAC
GGTTGGTGTGCTGAGCCAGAATCTACGGTGAAGGAGGAAGTGGGAGTCAT
TTTCCCATCGAAAAACGCGGCCGCTAGAGGTCAGGTCAACCGGAGGGGGG
GCGAGAGCCGAACGAGAGAGACGCGGAGGTAG
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