mRNA_P-littoralis_Contig848.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig848.14.1
Unique NamemRNA_P-littoralis_Contig848.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig848.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig848contigP-littoralis_Contig848:78724..78933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.4497268-CDS-P-littoralis_Contig848:78723..788041680791712.4497268-CDS-P-littoralis_Contig848:78723..78804Pylaiella littoralis U1_48CDSP-littoralis_Contig848 78724..78804 +
1680791712.4609127-CDS-P-littoralis_Contig848:78849..788731680791712.4609127-CDS-P-littoralis_Contig848:78849..78873Pylaiella littoralis U1_48CDSP-littoralis_Contig848 78850..78873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.4745018-UTR-P-littoralis_Contig848:78873..789331680791712.4745018-UTR-P-littoralis_Contig848:78873..78933Pylaiella littoralis U1_48UTRP-littoralis_Contig848 78874..78933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig848.14.1prot_P-littoralis_Contig848.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig848 78724..78873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig848.14.1

>prot_P-littoralis_Contig848.14.1 ID=prot_P-littoralis_Contig848.14.1|Name=mRNA_P-littoralis_Contig848.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
TWNGDEIESSSGVLAGGVASDTAVVEQGPASSDI*
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mRNA from alignment at P-littoralis_Contig848:78724..78933+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig848.14.1 ID=mRNA_P-littoralis_Contig848.14.1|Name=mRNA_P-littoralis_Contig848.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig848:78724..78933+ (Pylaiella littoralis U1_48)
ACGTGGAACGGCGATGAGATAGAAAGTAGCAGTGGCGTGTTGGCCGGCGG
CGTAGCCAGCGATACAGCAGTGGTGGAACAAGGGTCGGCCAGCTGGAAGG
CCAGGTCATGGGTATTTCAGACTCGTGGGCCGGCTTCTAGCGATATCTGA
AGAGCCTGGCGGTGCCTTGGCAAGCGCTGCCAGGAGGGGCGGGGGAGGTA
CCGCCCAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig848:78724..78933+

>mRNA_P-littoralis_Contig848.14.1 ID=mRNA_P-littoralis_Contig848.14.1|Name=mRNA_P-littoralis_Contig848.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig848:78724..78933+ (Pylaiella littoralis U1_48)
ACGTGGAACGGCGATGAGATAGAAAGTAGCAGTGGCGTGTTGGCCGGCGG
CGTAGCCAGCGATACAGCAGTGGTGGAACAAGGGCCGGCTTCTAGCGATA
TCTGA
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