mRNA_P-littoralis_Contig847.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig847.6.1
Unique NamemRNA_P-littoralis_Contig847.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig847.6.1 vs. uniprot
Match: D8LF84_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF84_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.530e-22
Identity = 67/114 (58.77%), Postives = 77/114 (67.54%), Query Frame = 2 
Query:  590 DTLNEVSFINPNAAQARSRRRVKLTAARARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRMLRNRESAALSRKRKSDRIGELEIQVKALQDENRRLRQRVDRQDTNG 931
            D L+EV F+NP+A +ARSRRRVKLTAARARLA                                 QRMLRNRESAALSRKRKSDRIGELEIQV+ALQ+ENRRLRQR+DR++ +G
Sbjct:    6 DALDEVHFVNPDAVRARSRRRVKLTAARARLAALAASGGGASSLGEEGAGPGVSEKEVRKQ----QRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRKEDDG 115
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BLAST of mRNA_P-littoralis_Contig847.6.1 vs. uniprot
Match: A0A6H5K1A6_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.470e-17
Identity = 85/124 (68.55%), Postives = 92/124 (74.19%), Query Frame = 2 
Query:  596 LNEVSFINPNAAQARSRRRVKLTAARARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRMLRNRESAALSRKRKSDRIGELEIQVKALQDENRRLRQRVDRQDT------NGGGNISV 949
            L+EV F+NP+A  ARSRRRVKL A      XXXXXXXXXXXXXXXXXXXXX            QRMLRNRESAALSRKRKSDRIGELEIQV+ALQ+ENRRLRQR+DRQ+       NG GN  V
Sbjct:    8 LDEVHFVNPDAVGARSRRRVKLAAX----XXXXXXXXXXXXXXXXXXXXXXGPGVSEKEVRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRQEDDGRDAGNGNGNCRV 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig847.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF84_ECTSI4.530e-2258.77BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K1A6_9PHAE3.470e-1768.55BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig847contigP-littoralis_Contig847:38879..42992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2906
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-01_004000.1
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.7102416-UTR-P-littoralis_Contig847:38878..390141680791711.7102416-UTR-P-littoralis_Contig847:38878..39014Pylaiella littoralis U1_48UTRP-littoralis_Contig847 38879..39014 +
1680791711.7270627-UTR-P-littoralis_Contig847:40222..406301680791711.7270627-UTR-P-littoralis_Contig847:40222..40630Pylaiella littoralis U1_48UTRP-littoralis_Contig847 40223..40630 +
1680791711.7608414-UTR-P-littoralis_Contig847:41317..429921680791711.7608414-UTR-P-littoralis_Contig847:41317..42992Pylaiella littoralis U1_48UTRP-littoralis_Contig847 41318..42992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.7447217-CDS-P-littoralis_Contig847:40630..413171680791711.7447217-CDS-P-littoralis_Contig847:40630..41317Pylaiella littoralis U1_48CDSP-littoralis_Contig847 40631..41317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig847.6.1prot_P-littoralis_Contig847.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig847 40631..41317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig847.6.1

>prot_P-littoralis_Contig847.6.1 ID=prot_P-littoralis_Contig847.6.1|Name=mRNA_P-littoralis_Contig847.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MATATSPSPAAVIWGDTLNEVSFINPNAAQARSRRRVKLTAARARLAALA
AAGAAVFSAGDAGAGGSAGGALSEREERKQQRMLRNRESAALSRKRKSDR
IGELEIQVKALQDENRRLRQRVDRQDTNGGGNISVAPPSPRVAWAPTNVA
AIAALSATSVVIPSTPATAVVPTTPPINSDNDLASNNFHHVAPDAIAASC
CSATASSCSSPASPANACFNISRPAVFA*
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mRNA from alignment at P-littoralis_Contig847:38879..42992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig847.6.1 ID=mRNA_P-littoralis_Contig847.6.1|Name=mRNA_P-littoralis_Contig847.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4114bp|location=Sequence derived from alignment at P-littoralis_Contig847:38879..42992+ (Pylaiella littoralis U1_48)
GTTTTTGGGATTTTTTTCTCATTTTGCTCAATCAATCGAGAGACGACACG
TGTCGCTTCGTTCCAGGCATCGTTTCTTGTTTGCCCCCGAGTCCCTCACT
TGCGTGCTGGTCTTTCAAGAACCTTCTGGAGTCGAGGTGAGCACAAAACC
TAGGGTGAAAACACTGTCGTGGTAGTGGTGGAAAGTAGCGGCCGTGGTGC
TACGGTGGCGAGGGTGCTGCGGCGACTATTGCTGTGCATATTCGGTTGAG
GAGAGCGTGGGTGTCATCCAATTTTTATGCAGCAGGTCAAATTGAGCCGT
TTGCGATGTGTCAACCCCGTGGTTACTGAATCCTCCGGGTGTTGCTAGAT
CTTGCTGTCAAGGAGGCTTGGTTCTCATCAGCTCTACGTACCTGTCCGCA
CCCTGCTGATCAAGGACCCCAAGCGAATCAGCCATATATTGTATATTGTG
GCTCCTGTCGCTGTCCTTGATTTGTTAGGAAACGTTCCTCCTTTTGCATG
ATCCAAGCATGATGTCAGCCGTTGGTTGAACATCTCGTACAAAGCACCGG
GCTGCTTCTCCTGTACGTATAACCGTACGTTTGCAGCTCGCTTCATGTCA
CAGCACTAGCAAGATCGGTTGCAGCGAAATGAGTGTTGTGGCATGATATG
ATTTGTAGAAGTGATGGATGGTGACTGCCTTGCCCCGTTCGAGCCCTACT
CCCTGGTTGGTCGCCTAAACAGGGTGGTAGTTATCCTGCTCAGACCCCAA
AAACTCGGCCGGACACTTACAGCAGTGATGATCTTACTTCGTCAACATAT
CATTCGAGCTGCTTTATCACACGTAGATTTTCACACCAAACATGTGTTTG
ATGTTTGATGCTGCGTCATAAATTTCTTGTACGTACTCGAAAGGTGCAGA
GTGGTGTCCAACTAAAGGGATGATAACACACACACTTGTACTAGAACGTC
GTTCGAAGTATTAACACGAGAGAGAACATGCTACACAGGGGCGGTCCCCA
GTCTGCCAATGGCACCAAACCCTCACCTAGCCACCCCCCACCACACCATC
CATGTTGGAGTACACACAAGTTCTCCTGTCAAAAATGCAAGATTTTACCG
TGTTCCACGACGCCCTCTCCTCTCTTTGTGCTCCCCTCCCCCGCCACTCA
CTTATTCACTTTTTTACCTACACACCTCCCGCAGCTGCTCTCTGCCTGTA
ACACCAACCCTCACCTCAACCTCCGCCCTCCCCCCTCTTCATATCACCGT
ACTCGCAAGTTTTGTGGATATAACTATGCTTGTGCAACGTCTGACCGATT
GTGCTCCCTCCCCCTCCCTTTTCCTCCCGACGACAAAAATACAGATGCCT
TGCTAATTTCTCGTCCAAAGCCACCACACCCGCAACCAGGCAAGTAAGTC
TTTCCATGGATTTTACGAGCTGCAACACCAAACAAGCATCGACACACGAG
AATCCGCCCGGGTGATCCCGATCGAGAGGACAAGAGACAAGACGTACGCC
CTGTTCGCCGAGTGAGGAAGAAGAACCTGCTCCAGCGATTTTATCTGCCG
AGTGATTAATCGTCTCTGATATCCGTCATCAAATCAACCAATTGTAATCC
ATCATCAACAAGATCATCAGCAGGAACGAAGAGAGAACTGAGACGAGAGA
AATCAGATCGACAGACGCCACCTTCCCTGCTGCGTCAGCCAGTTCACGAG
CGGCCAGGATCGATCCCGACCTCCCTCTGTTCACCCACAGCCAAGAGTAG
TCATGGCAACAGCAACATCACCGTCACCTGCTGCCGTGATTTGGGGGGAC
ACCCTCAACGAGGTGTCGTTCATCAACCCCAACGCGGCCCAGGCGCGCTC
CCGCCGCCGCGTTAAACTCACCGCAGCCCGCGCCCGCCTAGCGGCCCTGG
CAGCCGCGGGAGCAGCCGTGTTTTCCGCGGGGGACGCCGGCGCTGGTGGC
AGCGCCGGCGGTGCCCTCAGTGAGAGGGAGGAGCGCAAGCAGCAGCGGAT
GCTGAGGAACCGGGAGTCCGCCGCCCTGTCGAGGAAACGCAAGAGCGACC
GCATCGGGGAGCTAGAGATCCAGGTGAAGGCTCTCCAGGATGAAAACCGC
CGCCTCCGTCAGCGCGTAGACCGCCAAGACACCAACGGTGGCGGTAACAT
CAGCGTCGCCCCTCCTTCCCCCCGCGTAGCTTGGGCTCCCACCAACGTCG
CCGCGATTGCGGCGCTGTCCGCCACTTCCGTCGTCATTCCTTCCACACCT
GCGACCGCCGTCGTCCCCACCACCCCGCCCATCAACAGCGACAACGACCT
CGCCAGCAATAACTTTCACCACGTCGCTCCTGATGCCATCGCTGCCTCGT
GCTGTTCGGCTACTGCTTCGTCTTGTTCTTCTCCTGCTTCTCCTGCTAAT
GCTTGCTTTAATATCTCGCGACCCGCAGTGTTTGCGTAAACACCCTTAAT
CAGGCCGGTTTTTTGCGTGATGTGTTCTCTCGAATGTCCCAACCCTCTCT
CTACCCCTGCCCCCTCCCCCCCCTCCGCTCGCCGCACGGTGAGGGGAGGG
AGGCCGAGAGTGGGGGGTGGGGGAGGGGCGGTTTTCAGTTCGAGGGAGTG
CATTTTTCACACGCCCCGGCCTGAATCACGTCTTCCCGCAGCGGAGACAA
CACCAGCAATGCAACAGCAGCAGCAACAGAAACAAGAACAAGAACAGCAG
CAGTACGAAGAGCAGCAGCCCGCCACGGCAACACCGGCAGCAGCAGTGCC
GCCGTCAGCGTCAGGGATGGTGTCGCCGATGCCGTTGGGGTCGGGGGGCG
AGACCGAGGCTTCCACGGACGGGGAGGCGGGATCAACATCGTCTTGCTCA
TCCTCCGAGAGCGACGAAGCAGAGGGCGATGGCGACAACAACGCCATCGA
CTTCCTCTTCGCCGAACTCTTGTCCGAGGACACCCCAGGGGACGCAGGAG
CACATCACCACCACCACCACCACCACAACCACCACCACCCGCACGAGAAA
CAACAGGGAGAGGATGCGGAGATGCCGGGAGCGGCCGTGGGGGCGACGAG
TGCCGCCGCCGACCAGGAGCTTTTCCTGTTCTTGAGCGGGATGGACGGCG
CCCCTCCCGCACCAGTCGTGATCGACATGGGCTCCGCGCGTGCGATTTGA
TTTTCAGTCTAGATAGTGATGACTTTGTCCTTCTGGTTGTTTTCGTGTCG
ATACATTGTTCGTGACCTGCGTAGCAAATGTGTAGCAGGGGCGGGTCGAG
GCGGGTGAGGGAGAGAGTACTCAAGCGCTTTTATGGATATTTTACCCGCA
ATTAGCGCGTGGTGTGCTCGAGAGTCGAACAACAGATGAGTTGCGGTGAT
GGTGTGTTTTTTCACTGCTTCATCGCTCATTCTCTTGGCTTTGTATGCAG
TATCCCATTCCACCAGGCACTCAGCAAGCGAGGCGGGTTATCTCTAAGGC
GCCTGTATTTGACGCGTAAGCATACGACACGACTGTTTCGTGTGGCGTGG
CGTCGGTGCGCGCGTGCGTGTATAGATTGGTGTTCTTTATATACAAAGCA
TCGCTTGTACGGAGTATTTCGTTTGGAATCCTCAACACGAATGGAATTAT
TGCCTGGTGAATATTCCCGTCAACGTGTGATGTTGCGGTCTTTTTTCTTG
TCAAGTGAGCCTGTTAGAAAGCGGATATGTCAAGCTTTGTCTTTGATATT
TCGCGAATTTCCCCTAGGGTGTGTTGGAGAGGACCGGCGGAAAGAATGTC
GTGATACTTCAAGTATGAGAGTGTCGTGGGAAGGGCTGTACTGGGCAAAA
ACGAAAGTGTTGTGGAAACCTGGTGGGAAGCGAGAGGGAATTGACTTTTG
GTTCTTTTTTTACACACTGTCATGAAGCGTTTATTACGTGCCACCTTTCG
TTTTAATGTAATTTTGAGTAAACTAAGTACTTTGTACCGAAGTAATTTTT
TACCGCTTGAATTACTTCGCTTTTGCTTGGGCAAAAGTAATAAACGCGCT
AGTTGGAGAGAAAGAGGGGCGGGTATGTTTGAGTAACAAATGTCGACAGG
GGGAGAGGTAGAGCGAGAAGAGGTGGAGGATGATTGGGGGGGGGTAACGC
TTGGCGAACTCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig847:38879..42992+

>mRNA_P-littoralis_Contig847.6.1 ID=mRNA_P-littoralis_Contig847.6.1|Name=mRNA_P-littoralis_Contig847.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig847:38879..42992+ (Pylaiella littoralis U1_48)
ATGGCAACAGCAACATCACCGTCACCTGCTGCCGTGATTTGGGGGGACAC
CCTCAACGAGGTGTCGTTCATCAACCCCAACGCGGCCCAGGCGCGCTCCC
GCCGCCGCGTTAAACTCACCGCAGCCCGCGCCCGCCTAGCGGCCCTGGCA
GCCGCGGGAGCAGCCGTGTTTTCCGCGGGGGACGCCGGCGCTGGTGGCAG
CGCCGGCGGTGCCCTCAGTGAGAGGGAGGAGCGCAAGCAGCAGCGGATGC
TGAGGAACCGGGAGTCCGCCGCCCTGTCGAGGAAACGCAAGAGCGACCGC
ATCGGGGAGCTAGAGATCCAGGTGAAGGCTCTCCAGGATGAAAACCGCCG
CCTCCGTCAGCGCGTAGACCGCCAAGACACCAACGGTGGCGGTAACATCA
GCGTCGCCCCTCCTTCCCCCCGCGTAGCTTGGGCTCCCACCAACGTCGCC
GCGATTGCGGCGCTGTCCGCCACTTCCGTCGTCATTCCTTCCACACCTGC
GACCGCCGTCGTCCCCACCACCCCGCCCATCAACAGCGACAACGACCTCG
CCAGCAATAACTTTCACCACGTCGCTCCTGATGCCATCGCTGCCTCGTGC
TGTTCGGCTACTGCTTCGTCTTGTTCTTCTCCTGCTTCTCCTGCTAATGC
TTGCTTTAATATCTCGCGACCCGCAGTGTTTGCGTAA
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