mRNA_P-littoralis_Contig847.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig847.1.1
Unique NamemRNA_P-littoralis_Contig847.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig847contigP-littoralis_Contig847:5328..8064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size403
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.13e-08
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.3718433-CDS-P-littoralis_Contig847:5327..54491680791711.3718433-CDS-P-littoralis_Contig847:5327..5449Pylaiella littoralis U1_48CDSP-littoralis_Contig847 5328..5449 -
1680791711.385943-CDS-P-littoralis_Contig847:6489..66041680791711.385943-CDS-P-littoralis_Contig847:6489..6604Pylaiella littoralis U1_48CDSP-littoralis_Contig847 6490..6604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.3997002-UTR-P-littoralis_Contig847:6604..66151680791711.3997002-UTR-P-littoralis_Contig847:6604..6615Pylaiella littoralis U1_48UTRP-littoralis_Contig847 6605..6615 -
1680791711.411544-UTR-P-littoralis_Contig847:7909..80641680791711.411544-UTR-P-littoralis_Contig847:7909..8064Pylaiella littoralis U1_48UTRP-littoralis_Contig847 7910..8064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig847.1.1prot_P-littoralis_Contig847.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig847 5328..6604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig847.1.1

>prot_P-littoralis_Contig847.1.1 ID=prot_P-littoralis_Contig847.1.1|Name=mRNA_P-littoralis_Contig847.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
MLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTGGSKRCMKRQTS
DVSLRLPLPGPTATAVGAGVPTGGTAVDA
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mRNA from alignment at P-littoralis_Contig847:5328..8064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig847.1.1 ID=mRNA_P-littoralis_Contig847.1.1|Name=mRNA_P-littoralis_Contig847.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2737bp|location=Sequence derived from alignment at P-littoralis_Contig847:5328..8064- (Pylaiella littoralis U1_48)
CTAGGGCTCTCTTCTCGGCTGGCAACCCAGACTGGCCCTGTCTCGACTTG
AAGGACTGCCCTGACGGGCGTCTAAAGGTCTGTCTTCGCAAGAAGGACCA
AAAGGAGTACGTGACTTGCGACCGAAACGTGTGGAGCGACAAGGACACGT
GCAAGGTATGACTGCGGTTGTGTCGGAAACGTGATCTGTGATTACCTTTT
GCCCTCATTATCGTGATTGTGCTCTTCGATCACATCACGAATTTTGCGGT
GTTTGCATCTATGTCCTGTGTGTGCTGCTGTGTTTTATTTTGCAGTCTCC
CCGAGCACCACAGCCACCAGCACCTTTCCCATGAATATGTTGCTCGTTAG
TTTCAGTACTGCAGACTGTGTGTTGCCGGTAACACTGCAGACCGTGTGTT
GCCGGTTACAATGTGTCCGTGGATTGCACGTCCTTTACCGCCTGTTTGTT
AGAGCGGGGATTAACGGAAGGCCAAAAAAAACGAAATAGCGGAAACAAAA
ACGAAATAACTTCGTTCTTCTGGGAAAAAAAATAAAAAACTCCATTTGGG
TATTATCGCGTTTTCTGCTGCGAGGAGCTGGAGCAGCGGAATAGAGGAGA
TAACGCCAAAAATGATGTAAACCCAGAACGCGCGGGGCCCAATTTCAAAT
AACGCGGTGGAATGCATCGTGTTAGCGTGTGGGTATCGTAGACGGCCGTG
TGCTGTCTGTTGCACTGACTGGCGGGTATGACGGCTCGGCGCTGTCTGCT
GCGCTGCTGTAGTGTGTGGATTGGGCCTCGCTCTGTTCGGGTTGAGGCCT
GTTGCACCGCCGTGTACCGCAGTCCCAGTCTGTGTGAAGGAGTTCGCTGC
CTGGGAGGCTCATGGGCAAGCCTCCCAGGTTACCAAACTCCATGCATTTC
GTTTTCGTTTTCGCAAAATAAAAGGTCCGAAACACTTTATTTTTGCGAAA
TCGAAAACGAAGGAACGCCTCCCCGGCGGACGTTGAAACGAAAACACGCC
TCTTTCCTTTTTTTTCCCCGACCAATCAGAGCCCAATTTCGTTTTCGTTA
TCGCTATTTCGTTTTTCTTGGCCTTCCGTCAATACGGGCTCTTAGACCAA
TATTGTGAGCACACTTTTTTTTCATGCCTCTCACAATTTTTATATGTTGC
GCTGTACCGCCACCAGCACCTTTCCCATGAATCTGCTGCTTTTTTTTTAT
GCCTCGCACAGTTTTTTCAAGGTCACGCTGTACCGCCACCAGCACCTTTC
CCATGAATCTGTTGCTCGTTTGTTGTGGTGCAGATTGTGTGTTGCCGGTA
ACAATGAGGTGTCCGTCGATTGCATGTGCTTTCTGTGACCGTGCCTCTTT
CATGACCCTCACGGATGTTGTGATTTTTGCATCTGTTCCTTCCTCTTTCA
ACATTTTCAGCACTTCGCTTTTTTTTGTCATGCCTCGCACATTTCAAAGT
CACGCTGTCCATGCTGCTCGCCAGCAAGGATCACCCGCACGGTTGCCAGC
TGTGCCTGTGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGAC
GAGAAGGACGACCGTGGCTACACCGGTGAGAGGTTGTTTCGTCCCGTTTA
TCCGTCGAGGTCACGCTGTACTGCCACAAGCACCTTTCCCATGAATCTGT
TGCTATTTTTTTCATGCCTCGCACAATTTTTCAAGGTCACGCTGTACCGT
CACACCACATACAATACACCGATACCACCAGGATACCGCCACCTGACCAC
CCCACAGCAACCAACTTCCCGGGATATTCCAGGATAATTCTAGGAAGGTC
AATGCCCCAACCCCCGCTACAACAGAACAAGTGAAACTAGCGGGGGGGTA
GGGGTGTATCAGCTGGTATTGAATTATTCTGGAACTGGTTTATTTGTACC
TGATTTAATACTGCAAAGTTTTAAAACTGCTATATGATGTGCTGCTGAAG
CTGCCAATAGCACACACTTGATGTCCGCCTCCCAAGCCGGCACGTCTGCC
GCTGCAGCAGTTGGGCAACCACCTACAGTACCCCCAACGCCTTCATCGAA
CGACGCCCCCGGCCCTAGCACGGAAGGAACACAGCAGCAGCCTGCTCCAG
CATCTACTGCTGTTCCTCCGGTTGGAACCCCAGCACCGACAGCAGTCGCG
GTCGGGCCTGGTAGTGGCAAGCGCAGACTGACGTCTGATGTTTGGCGTTT
CATGCAACGCTTCGAGCCACCTGATCGAAAAGGGCGGAACGTCAAGTGCA
TTGTGACCATAAAACTTCCCCCGTCTTCTGGAGGGCAGTTGCCTGCTCGC
ACTATGGTGTGTGGAGCGCTCTTCAAGCACTTACAAAGCAACCGCAATTT
TCGGTTGCTTTGTAAGTGCTTGAAGAGTGCTCCACACACCAAAGTGCTAG
CAGGCAACTGCCCTCCAGCAGACGGGGGAAGTTTTATGGTCTCAATGCAC
TTGACGTTCCGCCCTTTTCGATCAGGTGGCACGAAGCGTTGCGGTTGCTT
TGTAAGTGCTTGAAGAGTGCTCCACACACCATAGTGCGAGCAGGCAACTG
CCCTCCAGCAGACGGGGGAAGTTTTATGGTCACAATGCACTTGACGTTCC
GCCCTTTTCGGTCAGGTGGCTCGAAGCGTTGCATGAAACGCCAAACATCA
GACGTCAGTCTGCGCTTGCCACTACCAGGCCCGACCGCGACTGCTGTCGG
TGCTGGGGTTCCAACCGGAGGAACAGCAGTAGATGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig847:5328..8064-

>mRNA_P-littoralis_Contig847.1.1 ID=mRNA_P-littoralis_Contig847.1.1|Name=mRNA_P-littoralis_Contig847.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig847:5328..8064- (Pylaiella littoralis U1_48)
ATGCTGCTCGCCAGCAAGGATCACCCGCACGGTTGCCAGCTGTGCCTGTG
TGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACG
ACCGTGGCTACACCGGTGGCTCGAAGCGTTGCATGAAACGCCAAACATCA
GACGTCAGTCTGCGCTTGCCACTACCAGGCCCGACCGCGACTGCTGTCGG
TGCTGGGGTTCCAACCGGAGGAACAGCAGTAGATGCT
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