mRNA_P-littoralis_Contig846.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig846.5.1
Unique NamemRNA_P-littoralis_Contig846.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig846.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig846contigP-littoralis_Contig846:89703..92940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons4
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.1344817-UTR-P-littoralis_Contig846:89702..898431680791711.1344817-UTR-P-littoralis_Contig846:89702..89843Pylaiella littoralis U1_48UTRP-littoralis_Contig846 89703..89843 +
1680791711.147804-UTR-P-littoralis_Contig846:92069..920791680791711.147804-UTR-P-littoralis_Contig846:92069..92079Pylaiella littoralis U1_48UTRP-littoralis_Contig846 92070..92079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.1632404-CDS-P-littoralis_Contig846:92079..921901680791711.1632404-CDS-P-littoralis_Contig846:92079..92190Pylaiella littoralis U1_48CDSP-littoralis_Contig846 92080..92190 +
1680791711.185248-CDS-P-littoralis_Contig846:92382..926371680791711.185248-CDS-P-littoralis_Contig846:92382..92637Pylaiella littoralis U1_48CDSP-littoralis_Contig846 92383..92637 +
1680791711.2028408-CDS-P-littoralis_Contig846:92874..929401680791711.2028408-CDS-P-littoralis_Contig846:92874..92940Pylaiella littoralis U1_48CDSP-littoralis_Contig846 92875..92940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig846.5.1prot_P-littoralis_Contig846.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig846 92080..92940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig846.5.1

>prot_P-littoralis_Contig846.5.1 ID=prot_P-littoralis_Contig846.5.1|Name=mRNA_P-littoralis_Contig846.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSGKVKTGTSAQAFVWVREWLATSEY
AGIVGFDTTPYSIGHIFVRLLKHKNYFCLDVAGMQKKAKVYSI*
back to top

mRNA from alignment at P-littoralis_Contig846:89703..92940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig846.5.1 ID=mRNA_P-littoralis_Contig846.5.1|Name=mRNA_P-littoralis_Contig846.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3238bp|location=Sequence derived from alignment at P-littoralis_Contig846:89703..92940+ (Pylaiella littoralis U1_48)
CCCGCTGCTGCCCACTTCCATCACGCTCGCACGCGACCAAGCACGCGACG
ACCGCGACGCCAACTTCTGATCTACCTGCTGTACGCGCTACCATCAGTAC
GAGTGAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTT
GTTGTCATGACCTCCTTAGGGCAGCACCCCGGGGTAGTTCCCTACCGAAT
TCCGACTACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACCAAGGAGG
TTTTTCTCATACACCCGGTGCCGTCAGTATATGTCTCAGGCTCTCTTGGA
TAGAAGTCCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAA
TGCGGACAAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGAA
GCAGGTTGAAAAACAATGCAGGAAAAATGGAAAAATTATTTTTGAAAAAT
CAACACACAGCCCATGGCGTGCAATCACCACCGCGCGGTACGCCAGAGCA
CGCCTCGTGCCTGCGGGTGAACAGAAAATGCTGTGGGTTACCAGAATGCC
GTCGGCTTCAGCTTTGGTGCTGTGTTGTGTATCGGTGACGAGTCACTTTG
TAGCAGGGCATTGTTGGCTAGGTAATCTGTAATCTGTAATCTGCCATCGC
TTCTGCGCCAGAGACAAAACACCATACAGACTTGAACAGACAGATCCTTC
GAGATTATCTCTTCCCACACAAAGCCGTTATCGTCCGTTCACACGCGGGT
GTGCTTGCCCACCACAGGTTTATAGCGTACCTTCGGGACCGCACGCTTCC
CAGTGCTGCGCACCGGTTAAGGGAGCGCACCTTCCGAACACCGTTCTGGC
TGCTGTGAGGGCCGAAGAAGACACAACATACCAATCTAAAACACCTCAGC
TGTAGTGTGCTGTGTTGGCTGTCGAATGAGCCCTGGTTTGTCGAGTTAGG
CGGCCTGTGGCCCTCAAATGTGACGAAAGAAAAAATCGAAGTCCGGCGGC
AAATAGGCTGCAGTTTTGTGCGGCGCAACCTCTCGCGGGTGCAGAGGCTG
CATTTCACCCGAGTACGAGAACGCATAGCACACAGCACAGATCCGTACGA
AAGTTGGCACATGGGCTCAACATACAACTAGGGGGTAGTTTGCAAGAAGA
CGCGCACCAATACGCGCTGTGGCGCACGAACGCGGCGCTTTCTTGTTAAA
AATGACGTCCGCGCGAAGGCACCATGCTTAGCTTCCTGCAAACGATTCAG
GGAGAGTGCACCGGTTTGAACAAGAGGACATTCTGAGGGTTGCTACGCAC
TTCGAATTTTGCGGGAACACCCAGTATAGGCTGAGAACGCGCAATCGGCG
CGCACCAGGTTTGAACTTAAATTTTACGTTCCGCCGACGCACACCGGCTC
TCTTCATCTTCCGCGCCAAAAAGAAAAACAGATGTACTTCGTGTGTCGCT
AGACTGATTAGGTTTTTCCGCGGGCGCGCGAATCCACGGCCCCCGCGAAT
CTGCTGGGCCCCTCCTATTTTTTCGCCGGTGCGCAGCACTGTTCCTCGCA
AGCCGTTTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCGGGCAATTT
CGAATGGGTGTAGACTAGTCTTACACGTGACAAATTCTTCGTCCTGCCTG
AACTCTTCCTCACTGCCGCGAACATCGATTGACTTATGCGCACACACTCT
ATCATTCGAAGATAACAATATGCGGACCATGACCATTGCTCCCATTCCCT
GTCCTCCACAGCAGTACTTCCTCAAAGAGGCAGCGTCCCACAAGAGGAAA
TGACGTAGAATACCACCCCTCTTGCGCAAATATGAATCTACCGTGCTCGA
TGTTTCGCGCGCTAGTGGTTTCATACTTTCCACCACTATTAATAGCTGTT
AATTTGCTTGCATGATTTGCACCCTTGTTTTGGCGAGCGTTAAAGGCTGT
ATTTCAGCTGTTGTTTTTGTCACATTGAAAACCGTTCCGTTCTCTCTATC
CAGTACCTCCAGCTGTCCGTGCTCTTCCAACACTTGCGTCGGGCGATTCC
CGTGGTCACAAGCTAACTACCCTAAGAAAAGGTATTCTAAAATAAAACAC
AATAAAAAACGGACCACGGAGCCGAAAGATCAGCAAAGCAGTAGAAAGAA
GCAGCAGAAGCATATTTAAAATATAACTCAACGCATGCCGTGCTCAAGAG
GCGGGGAATGGACGGGGAGTTTGTGCATCTTAGGCGATAGGTGTCTCAAT
GGCAATCAGGTATAACCTCTTGTCGCGTGAACACATGTGCATGCCTATTC
ATAAAAGCCGATGAATTTCGAATAGTTCCCATTTTTATATCGTTCACACC
GCAACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGA
TGAGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATC
GTGCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTT
CACCATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGT
AATGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGT
CCCGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCT
CGTACCTCTGTGTCGTCGTTTGTGATATAGGTGTGGACGCCCGCGTCCAT
CGCCACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGCCTGA
CGAGCATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGC
AAGGTCAAGACAGGAACCTCCGCCCAAGCGTTCGTATGGGTGCGTGAATG
GCTAGCCACCTCGGAGTATGCCGGAATAGTGGGATTCGACACGACGCCCT
ACTCGATTGGACACATATTCGTCCGCCTTCTGAAGGTACGGGATAATTGT
GTCGTAGACGGTTGGCCCGAGTGGGGCTACGTGCATCTGATTTTTTATTT
GGAAAGACAGCTGTGATCACAAGTGTATCGCACCCTAAACCGAAGCTTCG
CGACTGTTGGATCGATCTTTGAGTACGAGAGCTTTCCATTTGATGTCTTA
TATTTCTACCTGCGCACCCCTCCGCCCGTTCCCCTGTGTTCTCCTCGGCT
ACCGTTGTACTTCGCCCGAAAGCACAAGAACTACTTCTGTCTGGACGTGG
CTGGTATGCAGAAGAAAGCGAAGGTGTATTCCATTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig846:89703..92940+

>mRNA_P-littoralis_Contig846.5.1 ID=mRNA_P-littoralis_Contig846.5.1|Name=mRNA_P-littoralis_Contig846.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig846:89703..92940+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAACCT
CCGCCCAAGCGTTCGTATGGGTGCGTGAATGGCTAGCCACCTCGGAGTAT
GCCGGAATAGTGGGATTCGACACGACGCCCTACTCGATTGGACACATATT
CGTCCGCCTTCTGAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGGTA
TGCAGAAGAAAGCGAAGGTGTATTCCATTTAG
back to top