mRNA_P-littoralis_Contig844.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig844.53.1
Unique NamemRNA_P-littoralis_Contig844.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 462 bits (1190), Expect = 8.040e-159
Identity = 213/275 (77.45%), Postives = 243/275 (88.36%), Query Frame = 2
Query:  236 QTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 1060
            Q KV+ACLQ+LARGN F DIYHMSFIS+ TA ATFH F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E+ + +Y+ADG   Q KGCYLLV+NGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKGRFRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG+AGLHNAWE
Sbjct:  156 QLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 430          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 1.260e-149
Identity = 199/272 (73.16%), Postives = 236/272 (86.76%), Query Frame = 2
Query:  239 TKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNA 1054
            T+V+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLV+NGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAGSAGLHNA
Sbjct:   82 TQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA 353          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 2.690e-148
Identity = 199/273 (72.89%), Postives = 236/273 (86.45%), Query Frame = 2
Query:  236 QTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNA 1054
            + KV+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLV+NGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAGSAGLHNA
Sbjct:  172 ELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA 444          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 3.280e-116
Identity = 166/272 (61.03%), Postives = 205/272 (75.37%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHN 1051
            KV+ACL +L RGNVF  IY++S++S PT Q  FH FC HFA EMY EHI+LP+ +     +VM +YE+LGF GA+GSTDVTH+ W  CPYNQ RS+TGKEG PT+ YQVTV+H  R LAVT GFTG+TNDKTII  D+AV RIRTD  Y E+ + ++  DG T   KGCYL+V+NGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+K RFRI KLA+ Y K+E +D VFFTCCILHNMLH++D  G + E+ NW GSA L N
Sbjct:  127 KVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQN 398          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 3.040e-114
Identity = 163/271 (60.15%), Postives = 203/271 (74.91%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 1045
            KV+A L +L RGN F  IY +S++S  T Q  FH FC+HFAREMY EHIYLP+   G+    VM +Y+RLGF+GA+GS DVTH+ W  CPYN ARS+TGKEG PT+ YQVTV+H  RA+AVT GFT +TNDKT + +D  V +IRTD  YTE+T+++Y+ DG T   KGCYLLV+NGYHKW  LM PTKY + + D +FS RLES RKDVEC+FGI+KG FRI K+A+ YH++E IDNVFFTCCILHNMLH++D   ++ E   W  SAG 
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGA 367          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 3.250e-112
Identity = 170/298 (57.05%), Postives = 207/298 (69.46%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYT----------------------------ERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 1045
            KV+A L +L RGN F  IY MS++S  T Q  FH FCRHFAREMY E I+LPT +      VM +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +I TD  YT                            E+T+++Y+ DG T   KGCYLLV+NGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTC ILHNMLH++D   ++ E  NW  SAG+
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGV 382          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 4.140e-109
Identity = 160/267 (59.93%), Postives = 190/267 (71.16%), Query Frame = 2
Query:  260 QVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 1060
            QVL +GN F D+  +S +S   AQ TFH FCRHFA EM+ EHIYLPTG Y  +VM  + +LG+TGA GSTDVTH+ W  CP+   RSFTGKEG+PTIAY VTVDH  R LAVT GFTGATNDKTIIR+D  V +IRT   YTER Y L  A+G  R  +GC+L+V+NGYH+W TL+AP+KY     DT FS  LES RKDV C        FRI KL +PYHK+E +DN+FFTCCILHNMLH++D      E  +W GSAG H+AWE
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWE 300          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 1.230e-107
Identity = 147/188 (78.19%), Postives = 167/188 (88.83%), Query Frame = 2
Query:  497 CPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 1060
            CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E+ + +Y+ADG   Q KGCYLLV+NGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKG FRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG+AGLHNAWE
Sbjct:    2 CPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 189          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 4.070e-102
Identity = 153/270 (56.67%), Postives = 191/270 (70.74%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 1045
            +V+A L +L +GN F  I+ MS++S  T Q  FH FCR FAREMY EHI+LP  +      VM +Y+RLG                 CPYNQARS+TGK+ +PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +IRTD  YTE+T++LY+ DG T   KGCY L +NGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTCCILHNMLH++D   ++ E  NW  SAG+
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGV 272          
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 2.920e-98
Identity = 140/227 (61.67%), Postives = 176/227 (77.53%), Query Frame = 2
Query:  371 MYHEHIYLPTGDYQTK--VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 1045
            MY EHI+LPT +      V+ +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTI YQVTVDH  RA+AVT GFTG+TNDKT + +D AV +IRTD  YTE+T+++Y+ DG T   KGCY+LV+NGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGR RI  LA+ +  +E IDNVFFTCCILHNMLH++D   ++ E  NW  SAG+
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGV 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig844.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE8.040e-15977.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.260e-14973.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.690e-14872.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE3.280e-11661.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.040e-11460.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.250e-11257.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE4.140e-10959.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.230e-10778.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE4.070e-10256.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.920e-9861.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig844contigP-littoralis_Contig844:106678..109181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size1060
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.64e-100
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size864
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791710.2735977-CDS-P-littoralis_Contig844:106677..1069651680791710.2735977-CDS-P-littoralis_Contig844:106677..106965Pylaiella littoralis U1_48CDSP-littoralis_Contig844 106678..106965 -
1680791710.288346-CDS-P-littoralis_Contig844:107536..1080641680791710.288346-CDS-P-littoralis_Contig844:107536..108064Pylaiella littoralis U1_48CDSP-littoralis_Contig844 107537..108064 -
1680791710.3079944-CDS-P-littoralis_Contig844:108296..1083441680791710.3079944-CDS-P-littoralis_Contig844:108296..108344Pylaiella littoralis U1_48CDSP-littoralis_Contig844 108297..108344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791710.3234594-UTR-P-littoralis_Contig844:108344..1084561680791710.3234594-UTR-P-littoralis_Contig844:108344..108456Pylaiella littoralis U1_48UTRP-littoralis_Contig844 108345..108456 -
1680791710.3370855-UTR-P-littoralis_Contig844:109097..1091811680791710.3370855-UTR-P-littoralis_Contig844:109097..109181Pylaiella littoralis U1_48UTRP-littoralis_Contig844 109098..109181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig844.53.1prot_P-littoralis_Contig844.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig844 106678..108344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig844.53.1

>prot_P-littoralis_Contig844.53.1 ID=prot_P-littoralis_Contig844.53.1|Name=mRNA_P-littoralis_Contig844.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=288bp
MVEGSFQKSQAVNQTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHS
FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGC
CPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFD
KAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVNNGYHKWNTLMAPT
KYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDN
VFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE
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mRNA from alignment at P-littoralis_Contig844:106678..109181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig844.53.1 ID=mRNA_P-littoralis_Contig844.53.1|Name=mRNA_P-littoralis_Contig844.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2504bp|location=Sequence derived from alignment at P-littoralis_Contig844:106678..109181- (Pylaiella littoralis U1_48)
GTGGCGCTGGTGAAGGAGAGGGACTGGTTTCCAACGGGGAAGAAGGACGT AGCAGGTCGTGCAAGCATCCCAGTGGAGCTGAAGGTCAGCCCTTATTTTC TATCATGATGTTTAAAACTAAGATGATTTTATACAGCAGTAGATGTTCCC GACTTTTGGTGGTATATGCTGCGAAGTACTTCGTTATACGAAGAACACGA AGAAAAACACACAGCAGTACTGCTTGCCTGCCCATGCTTCTCTCGGTGTA TTGAAGCGTTTTCAAGCATCCCAGTGGAGCTGAATGTCAGCCCTCGTTTC CTATCATGTTGTAGTTCCAAACGAAGATGATTTTAAGGCCACCGGGGAAT AGGGTGCAAACAGCTCGCAGACTTTCGACAAACCCCTGATTATTCTGGGT TTTGAAAGTCTATCTTTTATACATACGAATCTACCACCTCAGGATGCTCC CGGAGGCAGTCGCTGTGAGCAATAAGTAGTGTCTTCGATCCAAGTCCTTG CGACATGCTACAGATTCACCGCTTGCGACTTTTGGAACGAGCCCTCCATC ATCTAGTTCTGCGAGCCACGATGCGTGGTTCGGATGCTGCTGTAGCAGCC ATATTTTTGAACGCTTCCAGCATACAGCACCCGAATAAAACGCAAAGCCA ACGTGAGTACCAGCGAACGCTCATTCAGCACAATGATCTCCTCACGTACC TTGCCCATCGCCGTGATTGATGAAGTCCGTAGGTACTCACGTATGCCCCG TATTTTCGGGTGCTGTATGCTGGAAGCGTTCAAAAATACGGCTGCTACAG CAGCATCCGAACCACGCCTCAAGGCTCGCAGAACTAGATGGTGGAGGGCT CGTTCCAAAAGTCGCAAGCGGTGAATCAAACGAAGGTGATCATGCAATTT GCTTGGCCATCAAGAACGACGAGGTCACATGTGGTTTAATTTGTTTTCAA CAGCGCGGGTGTGCGTCGCAATATTAAGGGCAGTGTTCCTGCGTAATCTT TGTGACACGTTTCATGTGTTCGGTATTTGAGCGATTCCCGATATATAGCC CGGAAGCAGTTTCCCCTGATTTTCCGCACACTTCCCACGTTGTCCGTTTA TTTGTACTCCTGTTTAGGTCATGGCTTGCCTGCAGGTGCTGGCCAGGGGG AACGTCTTTCGAGACATCTACCACATGTCTTTCATTAGCGTGCCGACAGC TCAGGCGACCTTCCACAGCTTCTGCAGGCACTTCGCCAGAGAGATGTACC ACGAACACATCTATCTACCGACAGGAGATTATCAGACGAAGGTCATGAGC GAGTACGAGCGCCTTGGCTTCACAGGCGCGATCGGGTCTACGGATGTCAC CCACCTCGCGTGGGGCTGTTGCCCCTACAACCAAGCCCGTTCTTTCACAG GAAAAGAAGGGTATCCTACCATCGCATATCAAGTGACCGTCGATCACACT AAACGCGCGTTGGCAGTGACACCGGGCTTCACGGGCGCGACGAATGACAA GACGATCATCCGTTTCGACAAAGCTGTCACCCGGATCCGGACCGACCCGA TCTACACCGAGCGCACGTACAACCTCTACGACGCGGACGGGGCGACACGC CAGGAGAAGGGGTGCTACTTGCTGGTGAACAATGGGTATCACAAGGTTGG TTGTTGCCGAAAGAGAAGGTTTGATTTTGTTGTGCCACCTTATACGTTGG AAGAACAAGCTACCTTGGCCCTTTTGTGACTGAGCCACGAAAAAGATCCC TTTGCAAGTCCTATGTCTTCGATTCGCTTTTTCGCGAAAGGAAAGCTGGT ACGCGACGCGTAGCTCCGAAGCATTCGTGAAGATGAACTTTTGATCTTTC ACGCTCGTATGCGAGCCTGTGCCTGCATATTTCGGGCATCTTTCGGGCAG TGGTGGTATGCCGAGCTGTGTGTAGCCTCTGTCGTTTTCGAGTGGGGATA ATCTTTGTGCAAGGCGGTGTGTTGGTGTGGATGTATGTATGGATAATCAG GGTCGGGTTCGCAGAGGAACGTGCCGCCCTAGGATTAAGGTTCCGGGCCA AAGTCCGTCGCTAAACCCCTGTCACCAACAGGTTAACTCGATAGTTAATG TGCGTTCATCATCGCCAGCATAAACGGGCGGGCGCGTTCGTGGAACGTAT CCAAGACCGTATTCCATCCGCCAACAGCCTCCAAGCCCCCCCCCCCCAAC GCCGTCGTCTTCGCAGTGGAACACTCTCATGGCCCCAACAAAGTACGCAA TAGAGAAGGGCGATACGGTGTTCTCCAACAGACTGGAGAGCTCGCGCAAG GATGTGGAGTGCTATTTTGGCATCGTGAAAGGCCGCTTCCGCATCAACAA GCTAGCGATCCCGTACCACAAGAAGGAAGACATCGACAACGTTTTCTTCA CCTGCTGCATCCTCCACAACATGCTGCACAGCTACGACAACAAGGGCGAG ATGGGTGAGGAACCCAACTGGGCAGGGAGCGCGGGCCTGCACAACGCATG GGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig844:106678..109181-

>mRNA_P-littoralis_Contig844.53.1 ID=mRNA_P-littoralis_Contig844.53.1|Name=mRNA_P-littoralis_Contig844.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=864bp|location=Sequence derived from alignment at P-littoralis_Contig844:106678..109181- (Pylaiella littoralis U1_48)
ATGGTGGAGGGCTCGTTCCAAAAGTCGCAAGCGGTGAATCAAACGAAGGT
CATGGCTTGCCTGCAGGTGCTGGCCAGGGGGAACGTCTTTCGAGACATCT
ACCACATGTCTTTCATTAGCGTGCCGACAGCTCAGGCGACCTTCCACAGC
TTCTGCAGGCACTTCGCCAGAGAGATGTACCACGAACACATCTATCTACC
GACAGGAGATTATCAGACGAAGGTCATGAGCGAGTACGAGCGCCTTGGCT
TCACAGGCGCGATCGGGTCTACGGATGTCACCCACCTCGCGTGGGGCTGT
TGCCCCTACAACCAAGCCCGTTCTTTCACAGGAAAAGAAGGGTATCCTAC
CATCGCATATCAAGTGACCGTCGATCACACTAAACGCGCGTTGGCAGTGA
CACCGGGCTTCACGGGCGCGACGAATGACAAGACGATCATCCGTTTCGAC
AAAGCTGTCACCCGGATCCGGACCGACCCGATCTACACCGAGCGCACGTA
CAACCTCTACGACGCGGACGGGGCGACACGCCAGGAGAAGGGGTGCTACT
TGCTGGTGAACAATGGGTATCACAAGTGGAACACTCTCATGGCCCCAACA
AAGTACGCAATAGAGAAGGGCGATACGGTGTTCTCCAACAGACTGGAGAG
CTCGCGCAAGGATGTGGAGTGCTATTTTGGCATCGTGAAAGGCCGCTTCC
GCATCAACAAGCTAGCGATCCCGTACCACAAGAAGGAAGACATCGACAAC
GTTTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGCTACGACAA
CAAGGGCGAGATGGGTGAGGAACCCAACTGGGCAGGGAGCGCGGGCCTGC
ACAACGCATGGGAG
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