mRNA_P-littoralis_Contig843.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig843.4.1
Unique NamemRNA_P-littoralis_Contig843.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig843.4.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.980e-21
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 KPDQEGEKGKTAVIKKERNPDDDDVSVXXXXXXXXXEQAGDDGEYPPRPDGWMHPL 168
            KPDQEGEKGKTAVIKKERNPDDDD SVXXXX     EQAGDDGEYPPRPDGWMHPL
Sbjct:  211 KPDQEGEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPL 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig843.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.980e-2189.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig843contigP-littoralis_Contig843:49817..49984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.7176175-CDS-P-littoralis_Contig843:49816..499841680791709.7176175-CDS-P-littoralis_Contig843:49816..49984Pylaiella littoralis U1_48CDSP-littoralis_Contig843 49817..49984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig843.4.1prot_P-littoralis_Contig843.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig843 49817..49984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig843.4.1

>prot_P-littoralis_Contig843.4.1 ID=prot_P-littoralis_Contig843.4.1|Name=mRNA_P-littoralis_Contig843.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
KPDQEGEKGKTAVIKKERNPDDDDVSVDDDDVPSEDEQAGDDGEYPPRPD
GWMHPL
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mRNA from alignment at P-littoralis_Contig843:49817..49984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig843.4.1 ID=mRNA_P-littoralis_Contig843.4.1|Name=mRNA_P-littoralis_Contig843.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig843:49817..49984- (Pylaiella littoralis U1_48)
AAGCCAGACCAGGAAGGGGAGAAGGGCAAGACGGCTGTCATCAAGAAGGA
AAGGAACCCGGACGATGACGATGTGAGTGTGGACGACGACGACGTGCCTT
CTGAGGACGAACAGGCGGGTGATGACGGGGAGTACCCGCCAAGGCCCGAC
GGATGGATGCACCCATTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig843:49817..49984-

>mRNA_P-littoralis_Contig843.4.1 ID=mRNA_P-littoralis_Contig843.4.1|Name=mRNA_P-littoralis_Contig843.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig843:49817..49984- (Pylaiella littoralis U1_48)
AAGCCAGACCAGGAAGGGGAGAAGGGCAAGACGGCTGTCATCAAGAAGGA
AAGGAACCCGGACGATGACGATGTGAGTGTGGACGACGACGACGTGCCTT
CTGAGGACGAACAGGCGGGTGATGACGGGGAGTACCCGCCAAGGCCCGAC
GGATGGATGCACCCATTG
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