mRNA_P-littoralis_Contig843.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig843.3.1
Unique NamemRNA_P-littoralis_Contig843.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 474 bits (1219), Expect = 1.190e-165
Identity = 224/234 (95.73%), Postives = 227/234 (97.01%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWVG 702
            FHQFCEHFATEMYDEHIFLPSEENG LDRVMGQYEKLGF GAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTV++AGRVLAVTEGFTGSTNDKTIICCDEAVD IRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEA+ LFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD VF TCCILHNMLHTHD MGGLEEDVNWVG
Sbjct:  159 FHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVG 392          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 1.970e-125
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWV 699
            FH+FC+HFA EMYDEHI+LPSE+NG LD VM QY++LGF+GAMGS DVTHIGWS+CPYN  RSYTGKEG PTVGYQVTV++AGR +AVTEGFT STNDKT +C D  V+ IRTD QY EK F V+ +DGTT TLKGCYL+VDNGYHKW++L+EP+KYPLSE + LFSKRLESVRKDVECFFGILK  FRI K+AM Y +QER+D VF TCCILHNMLHT D M  L E+  WV
Sbjct:  130 FHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWV 362          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 3.520e-122
Identity = 168/222 (75.68%), Postives = 188/222 (84.68%), Query Frame = 1
Query:   34 MYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWV 699
            MYDEHI LP+EE+G LD V+ QY++LGFTGAMGS DVTHI WSRCPYNQ RSYTGKEG PT+GYQVTV +AGR +AVTEGFTGSTNDKT +C D AV+ IRTDKQY EK F V+ +DGTT TLKGCY++VDNGYHKW++LIEPSKYPLSE + LFSKRLESVRKDVECFFGILK R RIL LAM +Q QER+D VF TCCILHNMLHT D M  L E+ NWV
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWV 222          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 6.710e-120
Identity = 176/261 (67.43%), Postives = 195/261 (74.71%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYA----------------------------EKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWV 699
            FH+FC HFA EMYDE I LP+EE+G LD VM QY++LGFTGA+GS DVTHI WSRCPYNQ RSYTGKEG PT+ YQVTV +AGR +AVTEGFTGSTNDKTI+C D AV+ I TDK Y                             EK F V+ +DGTT TLKGCYL+VDNGYHKW++LIEPSKYPLSE + LFSKRLESVRKDVECFFGILK RFRILKLAM YQ QER+D VF TC ILHNMLHT D M  L E+ NWV
Sbjct:  117 FHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWV 377          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.780e-109
Identity = 159/233 (68.24%), Postives = 178/233 (76.39%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWV 699
            FH+FC  FA EMYDEHI LP+EE+G L  VM QY++LG                 CPYNQ RSYTGK+  PT+ YQVTV +A R +AVTEGFTGSTNDKTI+C D AVD IRTDKQY EK F ++ +DGTT TLKGCY + DNGYHKW++LIEPSKYPLSE + LFSKRLESVRKDVECFFGILK RFRILKLAM YQ QER+D VF TCCILHNMLHT D M  L E+ NWV
Sbjct:   52 FHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWV 267          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 4.300e-105
Identity = 156/235 (66.38%), Postives = 181/235 (77.02%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWVGN 705
            FH+F  +FA EMY EHIFLP+ +     +VM QY++LGF+GA GSTDVTHI W  CPYNQ RSYTGKEG PTV YQVTV +  RVLAVT GFTGSTNDK+II  D AV  IR D  Y+EK FTV++ DGT   LKGCYL+VDNGYHKW  LI PSKYP+ + +  FSKRLESVRKDVECFFGI+K RFRILKL++ Y KQE +D VF TCCILHNMLH++D    +EE+ NW GN
Sbjct:  190 FHRFTRYFAREMYAEHIFLPTGDY--QKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGN 422          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.110e-103
Identity = 147/234 (62.82%), Postives = 182/234 (77.78%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWVG 702
            FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GF GA+GSTDVTHI W  CPYNQ R YTGKEGKPTV +QVTV ++GRVLAVT GFTG+TNDKTII  D+AV  IRTD  Y E+ + ++ +DG     KGCYL+VDNGYHKWR LI PSK P+   + +FSKRLES RKDVEC+FGILK RFRI KLA+ + KQE +D VF TCCILHNMLH+ D  G + E+ NW G
Sbjct:  115 FHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG 346          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.730e-102
Identity = 147/234 (62.82%), Postives = 182/234 (77.78%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWVG 702
            FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GF GA+GSTDVTHI W  CPYNQ R YTGKEGKPTV +QVTV ++GRVLAVT GFTG+TNDKTII  D+AV  IRTD  Y E+ + ++ +DG     KGCYL+VDNGYHKWR LI PSK P+   + +FSKRLES RKDVEC+FGILK RFRI KLA+ + KQE +D VF TCCILHNMLH+ D  G + E+ NW G
Sbjct:  206 FHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG 437          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.410e-90
Identity = 136/234 (58.12%), Postives = 165/234 (70.51%), Query Frame = 1
Query:    1 FHQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHTHDAMGGLEEDVNWVG 702
            FH+FC HFA EM+DEHI+LP+     LD VMG + +LG+TGA GSTDVTHIGW+ CP+  GRS+TGKEG PT+ Y VTV + GR LAVT GFTG+TNDKTII  D  V+ IRT  QY E+ + + K +GT    +GC+LIVDNGYH+W  LI PSKYP    +  FS+ LESVRKDV CF        RILKL M Y K+E +D +F TCCILHNMLHT D +   EE+ +W G
Sbjct:   68 FHKFCRHFAAEMFDEHIYLPTGTY--LDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTG 291          
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.050e-83
Identity = 138/243 (56.79%), Postives = 166/243 (68.31%), Query Frame = 1
Query:    4 HQFCEHFATEMYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNG----------YHK---------------WRMLIEPSKYPLSEANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*VFSTCCILHNMLHT 657
            H+FC HFA EM+DEHI+L +     LD VMG + +LG TGA GST+VTHIGW+ CP+  GRS+TGKEG PT+  +VTV +AGR LAVT GFTG+TNDKTII  D  V+ IRT+ QY E+ + + K +GT  T +GC+LIVDNG          +HK               W  LI PSKYP S  +  FS+ LESVRKDVECFFGILK RFRILKL M Y K+E +D +F TCCILHNMLHT
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTY--LDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 486          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig843.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.190e-16595.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.970e-12573.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.520e-12275.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX4_9PHAE6.710e-12067.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE1.780e-10968.24DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE4.300e-10566.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.110e-10362.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.730e-10262.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.410e-9058.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE1.050e-8356.79DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig843contigP-littoralis_Contig843:45447..46352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size705
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.27e-107
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size582
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.6270518-UTR-P-littoralis_Contig843:45446..454791680791709.6270518-UTR-P-littoralis_Contig843:45446..45479Pylaiella littoralis U1_48UTRP-littoralis_Contig843 45447..45479 +
1680791709.676765-UTR-P-littoralis_Contig843:46262..463521680791709.676765-UTR-P-littoralis_Contig843:46262..46352Pylaiella littoralis U1_48UTRP-littoralis_Contig843 46263..46352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.6393878-CDS-P-littoralis_Contig843:45479..458871680791709.6393878-CDS-P-littoralis_Contig843:45479..45887Pylaiella littoralis U1_48CDSP-littoralis_Contig843 45480..45887 +
1680791709.6495821-CDS-P-littoralis_Contig843:46088..462621680791709.6495821-CDS-P-littoralis_Contig843:46088..46262Pylaiella littoralis U1_48CDSP-littoralis_Contig843 46089..46262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig843.3.1prot_P-littoralis_Contig843.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig843 45480..46262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig843.3.1

>prot_P-littoralis_Contig843.3.1 ID=prot_P-littoralis_Contig843.3.1|Name=mRNA_P-littoralis_Contig843.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MYDEHIFLPSEENGGLDRVMGQYEKLGFTGAMGSTDVTHIGWSRCPYNQG
RSYTGKEGKPTVGYQVTVHYAGRVLAVTEGFTGSTNDKTIICCDEAVDGI
RTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSE
ANFLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLD*
back to top

mRNA from alignment at P-littoralis_Contig843:45447..46352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig843.3.1 ID=mRNA_P-littoralis_Contig843.3.1|Name=mRNA_P-littoralis_Contig843.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig843:45447..46352+ (Pylaiella littoralis U1_48)
TTCCACCAGTTCTGCGAGCACTTCGCAACCGAGATGTACGACGAGCACAT CTTCCTTCCCAGCGAGGAGAACGGCGGGCTGGATCGCGTCATGGGACAGT ACGAGAAGCTGGGGTTCACGGGCGCAATGGGTTCAACGGACGTCACCCAT ATCGGGTGGAGTAGGTGCCCGTACAACCAAGGACGTTCTTACACCGGTAA GGAAGGCAAGCCTACGGTCGGATACCAGGTGACGGTACACTACGCTGGGC GTGTGCTGGCCGTGACAGAGGGGTTCACTGGGTCCACCAACGACAAGACC ATCATCTGCTGTGATGAAGCGGTAGACGGAATTCGGACCGACAAGCAGTA CGCCGAAAAGCCATTCACAGTCCACAAAAAGGATGGTACCACGGAAACCC TGAAGGGGTGCTACCTCATCGTCGACAATGGTTACCACAAGGTGAAAAAT TGTAAAGTACCACACGAAATGTCGGGGGGGGTTTTCACGAGCACGCCTTG TTTGTCGGCCAACCTACACTATCATCCCGGTTGGTCGAGCTCCATGCCGT GGGTTTGACGTGCTACAATGAACGCGGTATGACACACAGAAAGTTAATAT TTCCCCTTCTCTCCTCTGGTTTGTTTCGGTCCTTTCATGCAGTGGCGGAT GCTCATTGAACCCTCGAAGTACCCGTTGAGCGAGGCTAACTTCCTGTTCT CGAAGAGGCTGGAGAGCGTGCGCAAGGATGTCGAGTGTTTTTTCGGCATC CTGAAGATGCGCTTCAGAATCCTGAAGCTCGCCATGACCTACCAGAAGCA GGAGCGCCTCGACTAAGTCTTCTCTACATGTTGTATCCTGCACAACATGC TCCATACGCATGACGCCATGGGCGGCCTGGAGGAGGACGTGAACTGGGTC GGCAAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig843:45447..46352+

>mRNA_P-littoralis_Contig843.3.1 ID=mRNA_P-littoralis_Contig843.3.1|Name=mRNA_P-littoralis_Contig843.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig843:45447..46352+ (Pylaiella littoralis U1_48)
ATGTACGACGAGCACATCTTCCTTCCCAGCGAGGAGAACGGCGGGCTGGA
TCGCGTCATGGGACAGTACGAGAAGCTGGGGTTCACGGGCGCAATGGGTT
CAACGGACGTCACCCATATCGGGTGGAGTAGGTGCCCGTACAACCAAGGA
CGTTCTTACACCGGTAAGGAAGGCAAGCCTACGGTCGGATACCAGGTGAC
GGTACACTACGCTGGGCGTGTGCTGGCCGTGACAGAGGGGTTCACTGGGT
CCACCAACGACAAGACCATCATCTGCTGTGATGAAGCGGTAGACGGAATT
CGGACCGACAAGCAGTACGCCGAAAAGCCATTCACAGTCCACAAAAAGGA
TGGTACCACGGAAACCCTGAAGGGGTGCTACCTCATCGTCGACAATGGTT
ACCACAAGTGGCGGATGCTCATTGAACCCTCGAAGTACCCGTTGAGCGAG
GCTAACTTCCTGTTCTCGAAGAGGCTGGAGAGCGTGCGCAAGGATGTCGA
GTGTTTTTTCGGCATCCTGAAGATGCGCTTCAGAATCCTGAAGCTCGCCA
TGACCTACCAGAAGCAGGAGCGCCTCGACTAA
back to top