mRNA_P-littoralis_Contig843.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig843.2.1
Unique NamemRNA_P-littoralis_Contig843.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.440e-34
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQVLEDE LKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWF T QRDAYGRRCHPVEHKV
Sbjct:   66 AQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKV 128          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.980e-23
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHK 186
            AQ+LED+ L+D TSI AK+FR DFRVPY FFLRLV LVK K+WF+TA +DA GR  HPVEHK
Sbjct:   97 AQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAGKDAIGRASHPVEHK 158          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5KQX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.020e-22
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LE++ L+D  S A+K+FR DFRVPY FFLRLV LVK KDWFTT+  DA GR+ HPVEHKV
Sbjct:   64 AQMLENKDLEDSNSKASKQFRLDFRVPYSFFLRLVALVKSKDWFTTSGCDAAGRQSHPVEHKV 126          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5K6R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.250e-22
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LED+ L+D  +I +K+FR D RVPY FFLRLV LVK KDWF+T+  DA GR+ HPVEHKV
Sbjct:   32 AQMLEDKDLEDSNTITSKQFRLDLRVPYSFFLRLVALVKSKDWFSTSGCDAAGRQSHPVEHKV 94          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.330e-22
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHK 186
            AQ+LED+ L+D TSI AK+FR DFRVP+ FFLRLV LVK K+WF+TA  DA GR  HP EHK
Sbjct:   49 AQLLEDKDLEDSTSITAKQFRGDFRVPFTFFLRLVALVKSKNWFSTAVTDAVGRASHPGEHK 110          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5KG98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG98_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-21
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LED+ L+D  SI +K+FR DFRVPY FFLRLV LVK KDW TT+  DA GR  HPVEHKV
Sbjct:  114 AQMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLVALVKSKDWSTTSGCDAAGRHSHPVEHKV 176          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.440e-21
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LED+ L+D TSI AK+FR DFRVPY FFLRLV LVK K+WF  A  DA GR  HPVEHKV
Sbjct:  111 AQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKV 173          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.860e-19
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LED+ L+D  S  +K+FR DFRVPY FFLRLV LVK K+WF TA  D  GR  HPVEHKV
Sbjct:   64 AQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKV 126          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.590e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            AQ+LED+ L+D  SI++K+FR DFRVP  FFLRLV LVK KDWFTT+  DA  R+ HPVEHKV
Sbjct:   37 AQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKV 99          
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.260e-17
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRDAYGRRCHPVEHKV 189
            +LED+ L+D TSI AK+ R DFRVPY  FLRLV LVK K+WF+TA  DA G   HPVEHKV
Sbjct:   26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKV 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig843.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.440e-3495.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLY4_9PHAE2.980e-2370.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX5_9PHAE3.020e-2268.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6R1_9PHAE7.250e-2265.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI1_9PHAE9.330e-2267.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG98_9PHAE1.530e-2168.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE6.440e-2169.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.860e-1965.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE5.590e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.260e-1765.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig843contigP-littoralis_Contig843:44154..44342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size190
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.5886307-CDS-P-littoralis_Contig843:44153..443421680791709.5886307-CDS-P-littoralis_Contig843:44153..44342Pylaiella littoralis U1_48CDSP-littoralis_Contig843 44154..44342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig843.2.1prot_P-littoralis_Contig843.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig843 44154..44342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig843.2.1

>prot_P-littoralis_Contig843.2.1 ID=prot_P-littoralis_Contig843.2.1|Name=mRNA_P-littoralis_Contig843.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
AQVLEDEGLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFTTAQRD
AYGRRCHPVEHKV
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mRNA from alignment at P-littoralis_Contig843:44154..44342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig843.2.1 ID=mRNA_P-littoralis_Contig843.2.1|Name=mRNA_P-littoralis_Contig843.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig843:44154..44342+ (Pylaiella littoralis U1_48)
GCGCAGGTGCTGGAGGATGAAGGCCTAAAGGATCCTACAAGCATAGCGGC AAAGAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGCGGC TTGTGGAGTTGGTGAAGAAGAAGGATTGGTTCACCACCGCGCAGCGCGAC GCGTATGGGCGGCGATGCCACCCAGTGGAGCACAAAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig843:44154..44342+

>mRNA_P-littoralis_Contig843.2.1 ID=mRNA_P-littoralis_Contig843.2.1|Name=mRNA_P-littoralis_Contig843.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig843:44154..44342+ (Pylaiella littoralis U1_48)
GCGCAGGTGCTGGAGGATGAAGGCCTAAAGGATCCTACAAGCATAGCGGC
AAAGAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGCGGC
TTGTGGAGTTGGTGAAGAAGAAGGATTGGTTCACCACCGCGCAGCGCGAC
GCGTATGGGCGGCGATGCCACCCAGTGGAGCACAAAGTG
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