mRNA_P-littoralis_Contig841.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.720e-39 Identity = 75/129 (58.14%), Postives = 96/129 (74.42%), Query Frame = 3
Query: 579 DNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAG-TLPWQLECTAEA 962
DN H IN DP+V AA ADGWDIRLI+QP+N P TNILDL FFN+IQSLQDRTTPRTVD+ + VK A+++ S L++VW SLQA LQ+I+L GDN KLPH++K + +G ++P +L +AEA
Sbjct: 4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKAANSGRSIPKELPLSAEA 132
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV) HSP 1 Score: 149 bits (376), Expect = 2.040e-39 Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAW 965
+ ++I+QDNA+PH++ NDPE A+++ G DIRLI QPANSPD N LDL FFNS+QSL D +PRT+ DL+K V E ++ KLNRV+LSLQAC+ +I+ G N K+PHV K RLE+ G LP +L C E +
Sbjct: 124 QTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLLPQRLTCPQEVY 259
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO) HSP 1 Score: 144 bits (363), Expect = 1.360e-38 Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTA 956
K ++IQQDNARPH+ ND A + DG+DIR++ QPANSPD NILDL FFNS+QS+Q +TT +T ++LV AV +A+++ K NR++L+L CL +IM GG+N +PH+RK LE G LP QL+C A
Sbjct: 37 KPIFIQQDNARPHIAPNDKLFCEAAKQDGFDIRIVCQPANSPDLNILDLGFFNSLQSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPHIRKAMLERQGHLPLQLKCDA 169
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR) HSP 1 Score: 140 bits (353), Expect = 2.030e-37 Identity = 66/144 (45.83%), Postives = 97/144 (67.36%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAALE 989
KI+++QQDNA+PH +ND ++ A AD W+I+ +QPANSPD N+LDL FFNSIQSLQ +P T+D+L+ V++A+ Q L+ V+ +LQAC++ IML G N K+PH+ KG+L G L + C+ E++ K + E
Sbjct: 14 KIIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHISKGKLGREGRLLEKYVCSKESYVKAKSNFE 157
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.050e-37 Identity = 75/136 (55.15%), Postives = 100/136 (73.53%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAG-TLPWQLECTAEA 962
+ ++IQ DN H IN DP+V AA ADGWDIRLI+QP+NSPDTNILDL FFN++QSLQDR TPRTVD+ + VK A+++ S ++VW+SLQA LQ I+L G+N KLPH++K +G ++P +L +AEA
Sbjct: 149 RTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEA 283
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A452XZT7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XZT7_AEGTS) HSP 1 Score: 144 bits (364), Expect = 9.330e-37 Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAW 965
+ ++IQQDNA+PH++ NDPE AA++ G DIRLI QP NSPD N L+L FFNS+QSL D +PRT+ DL+K V + ++ KLNRV+LSLQAC+ +I+ G N K+PH K RLE G LP +L C E +
Sbjct: 210 QTIYIQQDNAKPHILPNDPEFVAAVERTGLDIRLIQQPVNSPDLNGLELGFFNSLQSLTDCLSPRTLQDLIKGVLDEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHANKERLENLGMLPPRLTCPREVY 345
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A811Q0I0_9POAL (Hypothetical protein n=2 Tax=Panicoideae TaxID=147369 RepID=A0A811Q0I0_9POAL) HSP 1 Score: 138 bits (348), Expect = 1.920e-36 Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAAL 986
+I+WIQQDNA H+ +DP+ + A+ G DIR+++QP+NSPD N LDL FF S+QS+ DRTT R +DD++ V ++ + V LNRV+L+LQ C+ ++M + G N K+PH+ K RLE AG LP L C E +K +L
Sbjct: 31 EIIWIQQDNAPSHIHADDPDFKTAVAHTGLDIRIMNQPSNSPDMNCLDLGFFASLQSMTDRTTSRNMDDIIANVINEYEHYNPVILNRVFLTLQGCMIEVMKDNGGNRYKIPHMNKPRLEAAGMLPKSLSCDREIVQKAIESL 173
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS) HSP 1 Score: 145 bits (366), Expect = 2.320e-36 Identity = 70/137 (51.09%), Postives = 98/137 (71.53%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWE 968
+ ++IQQDNARPH+ ND E A +G+DIRL +QPANSPD N+LDL FFN+IQSLQ + PRT+D LV AV++++ + +L+ V+LSLQAC+ ++M G N+ KLPH++K +L G LP+QLEC + E
Sbjct: 297 ETIYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQLRRDGVLPFQLECGRDVME 433
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: UPI00098AC6DC (uncharacterized protein LOC109746020 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098AC6DC) HSP 1 Score: 140 bits (354), Expect = 3.550e-36 Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 3
Query: 558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAALE 989
+ ++IQQDNA+PH++ +DPE AA+ G DIR+I QPANSPD N+LDL FFNS+QSL D +P+T+ L+K V E ++ KLNR++L+LQ C+ +I+ G N+ K PHV K RLE G LP +L C E + LE
Sbjct: 123 QAIYIQQDNAKPHILLDDPEFLAAVAKTGLDIRIIQQPANSPDLNVLDLGFFNSLQSLTDCLSPKTLQVLIKGVLEEFEGYEVYKLNRIFLTLQTCMIEILNHAGGNEYKTPHVNKERLEGLGQLPPRLSCPREVYTNALHNLE 266
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 143 bits (360), Expect = 3.710e-36 Identity = 86/181 (47.51%), Postives = 110/181 (60.77%), Query Frame = 1
Query: 13 LQNVPLKMRTTQRGIATAIGLPKTTFRRRMRELQVKPQTRHVKPLLTTKSKIERLRWARRWTIPTAEVPAGGTRRFSGMGNVVCVDEKWFYICNVKQRYYVRDNEPAPRRQVQHKSHITKVMLLGAVARPRCNTTNNTDFDGKIGLYPFTRREATQRNSRNRVAGTMVTKTVE-VTKERYK 552
++ VPL R+T R +A AI + KTT RR++E ++P T VKP LT +K RL + P T FS M NVV +DEKWFY+C +YY+ +EP P R+V+ K ITK M L AVARPR F GKIG++PFT E +RNS+NRVAGTMVTK E +TKE+ K
Sbjct: 28 IKQVPLNRRSTVRSLAKAISVSKTTVHRRVQEGLIRPHTNAVKPTLTEDNKRTRLEFCLSQIDPD-------TLLFSDMFNVVHIDEKWFYMCKTTTKYYLVHDEPEPTRRVKSKRFITKAMFLAAVARPR------NGFSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVK 195 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig841.11.1 >prot_P-littoralis_Contig841.11.1 ID=prot_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp MRTTQRGIATAIGLPKTTFRRRMRELQVKPQTRHVKPLLTTKSKIERLRWback to top mRNA from alignment at P-littoralis_Contig841:49592..50580+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig841.11.1 ID=mRNA_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=989bp|location=Sequence derived from alignment at P-littoralis_Contig841:49592..50580+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig841:49592..50580+ >mRNA_P-littoralis_Contig841.11.1 ID=mRNA_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig841:49592..50580+ (Pylaiella littoralis U1_48)back to top |