mRNA_P-littoralis_Contig841.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig841.4.1
Unique NamemRNA_P-littoralis_Contig841.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig841.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig841contigP-littoralis_Contig841:24630..25449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791708.1885593-CDS-P-littoralis_Contig841:24631..246801680791708.1885593-CDS-P-littoralis_Contig841:24631..24680Pylaiella littoralis U1_48CDSP-littoralis_Contig841 24632..24680 -
1680791708.204362-CDS-P-littoralis_Contig841:25231..254491680791708.204362-CDS-P-littoralis_Contig841:25231..25449Pylaiella littoralis U1_48CDSP-littoralis_Contig841 25232..25449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig841.4.1prot_P-littoralis_Contig841.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig841 24632..25449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig841.4.1

>prot_P-littoralis_Contig841.4.1 ID=prot_P-littoralis_Contig841.4.1|Name=mRNA_P-littoralis_Contig841.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
FTQQKNDGLLPAASGATSGGDIQRWKHLKDTRKVRSNNTTRGKHPAQTNG
ARQTGHTEYNVIKGKSRRRSTRSAPARAPAPTSATAAGA
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mRNA from alignment at P-littoralis_Contig841:24630..25449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig841.4.1 ID=mRNA_P-littoralis_Contig841.4.1|Name=mRNA_P-littoralis_Contig841.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=820bp|location=Sequence derived from alignment at P-littoralis_Contig841:24630..25449- (Pylaiella littoralis U1_48)
TTCACCCAGCAGAAAAATGATGGGCTGCTTCCGGCGGCTTCGGGTGCTAC
CTCCGGTGGTGATATCCAACGTTGGAAGCATCTGAAAGACACGAGAAAGG
TGCGAAGTAACAACACAACGAGAGGCAAACACCCCGCACAAACAAACGGA
GCACGGCAGACGGGACACACGGAATACAATGTGATTAAGGGGAAAAGTCG
GCGGCGGAGCACCAGAAGGTAAGCGACATATCATTCTGATACCAAATCGT
ACATACGTACAGCAGTAGTTTCAGGACACGTTGTAATTTGCTGCATCATT
TATGTGCGTGATGAAGGGTTCAACCTCGTTTTCCGCAGTACATGATCCGA
AGATTGAAGTACAGCAGTAGCCCTGTACCATGCGTGTCACCCTCTGTTAA
ATACTTCATGGACAATATGATAGCACAAATAGGGGTACGGCACACCAGTC
ACGCCCGTGACCAACAAACACACATCATATTTAACACACTTTCAAAATCA
CCACCCGCCCAACACTCGACACACGCCTGCTCTTTCTCTCTATCTCTCTG
CCTATGATATAATATCATACAAACACAAAGGAATACTTGCTTATGATATC
ACACTACCTTTGCCCCCCCTTCACGAAACACCGAAAACTACGAGGGGGGG
GGGGGGGGGCTTCATTTTTGTTTAATCATTTCTATTTTGCTCACCTTCGA
ATTCTTCGTGGTAATTCACCCCCTCATCGTCGTCGCCTTCCTCACCGTGC
ATTAATTTTCTTTTTCGAGCGCGCCCGCTCGTGCGCCGGCCCCGACTAGC
GCTACTGCTGCTGGTGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig841:24630..25449-

>mRNA_P-littoralis_Contig841.4.1 ID=mRNA_P-littoralis_Contig841.4.1|Name=mRNA_P-littoralis_Contig841.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig841:24630..25449- (Pylaiella littoralis U1_48)
TTCACCCAGCAGAAAAATGATGGGCTGCTTCCGGCGGCTTCGGGTGCTAC
CTCCGGTGGTGATATCCAACGTTGGAAGCATCTGAAAGACACGAGAAAGG
TGCGAAGTAACAACACAACGAGAGGCAAACACCCCGCACAAACAAACGGA
GCACGGCAGACGGGACACACGGAATACAATGTGATTAAGGGGAAAAGTCG
GCGGCGGAGCACCAGAAGCGCGCCCGCTCGTGCGCCGGCCCCGACTAGCG
CTACTGCTGCTGGTGCT
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