mRNA_P-littoralis_Contig840.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig840.27.1
Unique NamemRNA_P-littoralis_Contig840.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig840.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig840contigP-littoralis_Contig840:83044..85108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001080.1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791708.0326524-CDS-P-littoralis_Contig840:83043..830841680791708.0326524-CDS-P-littoralis_Contig840:83043..83084Pylaiella littoralis U1_48CDSP-littoralis_Contig840 83044..83084 +
1680791708.0460842-CDS-P-littoralis_Contig840:83626..837311680791708.0460842-CDS-P-littoralis_Contig840:83626..83731Pylaiella littoralis U1_48CDSP-littoralis_Contig840 83627..83731 +
1680791708.0594354-CDS-P-littoralis_Contig840:84061..841601680791708.0594354-CDS-P-littoralis_Contig840:84061..84160Pylaiella littoralis U1_48CDSP-littoralis_Contig840 84062..84160 +
1680791708.075305-CDS-P-littoralis_Contig840:84622..847011680791708.075305-CDS-P-littoralis_Contig840:84622..84701Pylaiella littoralis U1_48CDSP-littoralis_Contig840 84623..84701 +
1680791708.092686-CDS-P-littoralis_Contig840:84970..851081680791708.092686-CDS-P-littoralis_Contig840:84970..85108Pylaiella littoralis U1_48CDSP-littoralis_Contig840 84971..85108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig840.27.1prot_P-littoralis_Contig840.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig840 83044..85108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig840.27.1

>prot_P-littoralis_Contig840.27.1 ID=prot_P-littoralis_Contig840.27.1|Name=mRNA_P-littoralis_Contig840.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MHLMTMITDDLIMRFIILAERIEGCVAADGSGRGCLSPEELREIFMVNRH
PNQHENAAAKEVKAELQAWANERGLTVPVIRRGSISKAASYHLHQKALKE
QQSNKARQVPYFDFMDTVKSGILMDIRVPESQRVAFAGRSHPMSVPKGSQ
RHT*
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mRNA from alignment at P-littoralis_Contig840:83044..85108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig840.27.1 ID=mRNA_P-littoralis_Contig840.27.1|Name=mRNA_P-littoralis_Contig840.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2065bp|location=Sequence derived from alignment at P-littoralis_Contig840:83044..85108+ (Pylaiella littoralis U1_48)
ATGCACCTTATGACCATGATCACGGACGACCTCATCATGAGGTGGGTCGG
TCGTGTACACTATCACAGAATCAGACCTTGCAGGTTTGAGCAATCATTCC
GTGATGTTCCTGAACGCTGTTGACTTTACGCCGAGATATATACCATTGGT
AGGTCTCCAGCAATTTATTTGCCCCGTTAGGACCCTGGTCTCCATTTGGC
CTTAAACTACCTGCGAAATGATACGGGAAACAATGTGTTGGCGTACACGT
TTGGTGATTACAACAACACGGATTCAAGTAGCTCAAAACCAGCCCCATGG
ATAAACTCGATCCCTTACAACGCACGCACGTGAAAGCCGGTGGGTAGTTG
AGCGTGAATTCGCAGGTCCAAACGTCTCTAAGCCTTTCTCTTGTATACAT
GACTGTACTCGTAAGGGTTTTATTTTGAGCGAGAGTTTTGGCAAGGGTAC
ATATAGGAAGCCTCACGAGTACAACGGGTCGGGTTTTAGCAAAAGAAACG
GGATGGGGTTCGACAAAGGCTACTGTGTAGGTCGTTCATCTCCTCTAATA
CTCACTTCCTTCCTTTCGGCGGGTTGAAAACAGGTTCATAATCCTCGCTG
AGCGTATCGAGGGTTGTGTTGCGGCCGACGGTAGCGGTCGTGGCTGCCTC
TCACCGGAGGAGCTCCGGGAGATATTCATGGTCAACAGGTGATCCACCAC
CGGGTGGGGGCGTCACTAGCAGGCATAGCCCCTTTTTGAATGTCAATGAT
ACATAGTTCACGAGTGTTCCAGCGGGGACGAACATGGCCGTTTCACACAA
ACCGTACACCTTACGCTGATGCATATCGCATCACGTTTTACGCGTGCTGC
GGGATCGTGACTGCCGCACCAAGTGCGATAAAAGGGCGTTCGCTGCCACC
ACATCAGCGCCGGACGACAGAATCATTCAGCAAGACGCACCACCCGAAAT
AATCCGAGTGCTTTGTGTCAGCGGTGTTCTCTTGCTGTAGCTCATGATTT
GACGGCGATCGATCTCAGGCACCCGAACCAACACGAAAACGCCGCTGCGA
AAGAGGTGAAAGCAGAGCTGCAAGCGTGGGCGAACGAGAGAGGTTTGACA
GTACCTGTGATCAGACGGTAAGCCCAACGAATTTTAACCTGGGTAGGACG
CTCCGGTTGTGGTGCTCCTGAACGATGCAAACAAAATGGCCGCTTTCGGG
TGACATATTGCTCTTTTTGCGATTTGGAGGTGGTGGAGCCTTTGCAACGT
CGACAGGGAGGTTTTGTACGACACCGAGAGAGCCGTGCGAATACGGTTTG
GCGGCTCTTTTTACCGAATTAGACTGAATGTACACCGCCCTCCATGTCGG
ACCACGCATGAAACTGTACCAGATGCCAAAATAATACGTCTGTATAGTAC
GGTGTGCATTGGAACGCTGCCCCAAACTATTGGCCGCTTCAAGCAAGCCC
TACTCCCGTGTTGATGTTTGGTCAGCGTGGTAGCTTTCGCCACACGACCG
AATCAAAAGTGGTCGAGGCAAAGTTGATCGACGATCAGCTGCCGCTATTC
TGTTGCAACTTTCGCAATGAGCGCTTCAGGGGGTCCATAAGCAAAGCGGC
GTCGTACCACCTGCACCAGAAGGCCTTGAAGGAGCAACAGTCGAACAAGG
CACGCCAGGTGCGTGGTGTGAGGCGGTGAAGTGCAGTCCCGTCTGGCGAA
GAATTAGAGGCGGGATAACTTCCTTTCTGTTCTGAAAACTCTCAGCCCCC
CCGGGGCACCTACCGCCAGCTTCGATGGCTGTTGCCAAGAAAACTACAAG
ACTCCGTGAGTCAATTGAACGATCGAAGTTCGTGTGGCAATGAGCCGTTT
CTTGCCTCAAGTGGATTGGTGCTAACGCCCCCACTTCTCTCTCGCCTTGG
ATCCGTGTTCCGCTTGCCTCAATCAAGGTCCCATATTTCGATTTCATGGA
CACGGTGAAGAGCGGGATCCTTATGGACATCCGTGTGCCTGAAAGCCAGC
GTGTGGCCTTCGCGGGTCGGTCGCACCCGATGTCCGTCCCGAAGGGGTCT
CAGCGGCATACCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig840:83044..85108+

>mRNA_P-littoralis_Contig840.27.1 ID=mRNA_P-littoralis_Contig840.27.1|Name=mRNA_P-littoralis_Contig840.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig840:83044..85108+ (Pylaiella littoralis U1_48)
ATGCACCTTATGACCATGATCACGGACGACCTCATCATGAGGTTCATAAT
CCTCGCTGAGCGTATCGAGGGTTGTGTTGCGGCCGACGGTAGCGGTCGTG
GCTGCCTCTCACCGGAGGAGCTCCGGGAGATATTCATGGTCAACAGGCAC
CCGAACCAACACGAAAACGCCGCTGCGAAAGAGGTGAAAGCAGAGCTGCA
AGCGTGGGCGAACGAGAGAGGTTTGACAGTACCTGTGATCAGACGGGGGT
CCATAAGCAAAGCGGCGTCGTACCACCTGCACCAGAAGGCCTTGAAGGAG
CAACAGTCGAACAAGGCACGCCAGGTCCCATATTTCGATTTCATGGACAC
GGTGAAGAGCGGGATCCTTATGGACATCCGTGTGCCTGAAAGCCAGCGTG
TGGCCTTCGCGGGTCGGTCGCACCCGATGTCCGTCCCGAAGGGGTCTCAG
CGGCATACCTGA
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