mRNA_P-littoralis_Contig840.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig840.1.1
Unique NamemRNA_P-littoralis_Contig840.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig840contigP-littoralis_Contig840:3282..4251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791706.9895465-CDS-P-littoralis_Contig840:3282..33621680791706.9895465-CDS-P-littoralis_Contig840:3282..3362Pylaiella littoralis U1_48CDSP-littoralis_Contig840 3283..3362 -
1680791707.0020356-CDS-P-littoralis_Contig840:4115..42511680791707.0020356-CDS-P-littoralis_Contig840:4115..4251Pylaiella littoralis U1_48CDSP-littoralis_Contig840 4116..4251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig840.1.1prot_P-littoralis_Contig840.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig840 3283..4251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig840.1.1

>prot_P-littoralis_Contig840.1.1 ID=prot_P-littoralis_Contig840.1.1|Name=mRNA_P-littoralis_Contig840.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
DAERDVERGVSCGAVDIFRRADGVVRGPDREVHAAVYAKKAHQERLFAVG
TLKDIHRGASQAVRYWTTTKQT
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mRNA from alignment at P-littoralis_Contig840:3282..4251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig840.1.1 ID=mRNA_P-littoralis_Contig840.1.1|Name=mRNA_P-littoralis_Contig840.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=970bp|location=Sequence derived from alignment at P-littoralis_Contig840:3282..4251- (Pylaiella littoralis U1_48)
GATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGATAT
CTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATG
CTGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTGGGTGATTATCTTT
CGGGTCGTGTTTCAGGTTTCATTTGTTTTTTGTGGGAATTCTGACTATAT
TTGTGGTACGAACCGCTACTTTTCCACCCTTTTGCGTGCGAACGAGACGA
AAGTGCCACGGAATGTCGAATCTTCGGCTGGCATGCCTGACGAGAGCGAC
GTTTGAAGATGTATGCAAGCGTGCACCGTACTGCGAAGTTCATGTCGCGG
TACAAGTAAAAACAAAACATGATGGGCCGTGGGTGGTTCATTTTGGATGG
TGTCTTTCTTGTGATGTGTTTGGGGTTCCTGTGATGTTGATTGAATTCGG
GATAAGACTCGTAAATTTTCCTCTGTCGTCGCGTGCGAGCGCCGCAAGAG
TGTTGCAGACTGTGGGACGTGCGGCTGGCATGCGTCGCAAGGGTGACATA
TGATCCGGAATCTATATGCGTTCGTAACGAGAGGCAATGCCCACCATGTG
ACGCGCTCGCTTGCATGCCCGCGCTTTTTCTCAGGGCTGAAACTGTGGGC
AGTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGGTT
TCGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGATTGCCCGCTCGGCCGG
ACTTGCCGGATGGTCTTGTTCGTATTGTTCGGGGCTTGCCCCAACCTCGC
GGAGCAGCTCCTGCAATCTGGTACCTACGTGGCCATGGACAACTTTTTTT
CTTCGCCTGTCCTCTTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTGTG
GGTACACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTG
GACCACCACCAAGCAGACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig840:3282..4251-

>mRNA_P-littoralis_Contig840.1.1 ID=mRNA_P-littoralis_Contig840.1.1|Name=mRNA_P-littoralis_Contig840.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig840:3282..4251- (Pylaiella littoralis U1_48)
GATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGATAT
CTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATG
CTGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTTGTTCGCTGTGGGT
ACACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGGAC
CACCACCAAGCAGACC
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