mRNA_P-littoralis_Contig84.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.73.1
Unique NamemRNA_P-littoralis_Contig84.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.020e-33
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ KK  R QSVA+AT  A+ +A+
Sbjct:  150 GNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRRQSVAEATSVAMKTAL 251
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.970e-30
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAER A+AKREG RL+  NR G  + KK  R QSVA+AT  A+ +A+
Sbjct:  314 GNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGGR-QSVAEATSVAMKTAL 415
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.530e-30
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAV 297
            GNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ K+  R QSVA+AT  A+
Sbjct:  845 GNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQKKEGGR-QSVAEATSVAM 942
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.790e-29
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++FCQGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    Q+VA+AT  A+ +A+
Sbjct:  308 GNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQNVAEATSVAMKTAL 409
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.410e-29
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RLH  NR GKK+  K    QSVA+AT  A+ +AI
Sbjct:  287 GNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNKGV-GQSVAEATSAAMKTAI 388
[Close]
BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.550e-28
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++F QGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    QSVA+AT  A+ +A+
Sbjct:  470 GNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQSVAEATSVAMKTAL 571
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BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.680e-26
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            GNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RL+  NR GKK   K    QSVA+AT  A+ +A+
Sbjct:  522 GNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTAL 623
[Close]
BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.750e-23
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKK 240
            GNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDD TG      GGA+RRA+AKREG RLH  NR GKK
Sbjct:  410 GNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK 489
[Close]
BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.120e-22
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMN 225
            GNNQPWV+F QGD+D +++G A +KYPELDQVCN LLPED QREDDGTG      GGAERR +AKREG RL   N
Sbjct:  445 GNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARLDEQN 519
[Close]
BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Match: A0A6H5KRN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN0_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.030e-20
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   25 FC-QGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAI 309
            FC  G +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RL+  NR GKK   K    QSVA+AT  A+ +A+
Sbjct:   27 FCFTGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGVVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTAL 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE3.020e-3366.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY9_9PHAE3.970e-3064.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNM0_9PHAE6.530e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX9_9PHAE5.790e-2963.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FJ39_ECTSI9.410e-2962.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFU0_9PHAE7.550e-2863.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE2.680e-2660.19Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FU69_ECTSI1.750e-2366.25Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JSN7_9PHAE2.120e-2268.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN0_9PHAE4.030e-2057.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:438006..439114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FIC6
Model size438
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.88e-29
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791705.289767-CDS-P-littoralis_Contig84:438005..4380391680791705.289767-CDS-P-littoralis_Contig84:438005..438039Pylaiella littoralis U1_48CDSP-littoralis_Contig84 438006..438039 +
1680791705.3031745-CDS-P-littoralis_Contig84:438711..4390161680791705.3031745-CDS-P-littoralis_Contig84:438711..439016Pylaiella littoralis U1_48CDSP-littoralis_Contig84 438712..439016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791705.3135858-UTR-P-littoralis_Contig84:439016..4391141680791705.3135858-UTR-P-littoralis_Contig84:439016..439114Pylaiella littoralis U1_48UTRP-littoralis_Contig84 439017..439114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.73.1prot_P-littoralis_Contig84.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 438006..439016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.73.1

>prot_P-littoralis_Contig84.73.1 ID=prot_P-littoralis_Contig84.73.1|Name=mRNA_P-littoralis_Contig84.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
GNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGA
AAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVS
SAIAGWHRCWHR*
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mRNA from alignment at P-littoralis_Contig84:438006..439114+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.73.1 ID=mRNA_P-littoralis_Contig84.73.1|Name=mRNA_P-littoralis_Contig84.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1109bp|location=Sequence derived from alignment at P-littoralis_Contig84:438006..439114+ (Pylaiella littoralis U1_48)
GGCAACAATCAGCCTTGGGTGAACTTCTGCCAAGGTAAGAATGCCGTTCG
AGCGTGACAGGGAAACTCACATGCGTAGATAAAACGTTGTACAGGGGCCT
TCGGCATAAACTGTTCAGCGTGTCAATTTTCGTGTCGGCCGTAGGCGAGA
CGCTGCCTTACCGGTCTTGTTTAGGTGATTCGATTCTGCACCGCTTCGTT
TGTGTTTCTCATTTCACCTTGTGCTTCGAGTGCAAGGGAACAAGTTGGGC
TCACCATCCGGGTTTAGACGATCGTAAGGTCAACAAAACGTTTTTTTGCA
AGGGTGTACATAGACTGCTGCCGGACCGATTGTTCCCGGATTTTGACGGC
AGTGCTGGTGATTCCGGCCCGTCCCGGCAAAAACATAAAAGTAACCGGCC
CGTCCCGGCCCCCGGAAAGAAATAAAAAAAAAACATTATATTTGTCGTCC
ACCCGAATTCTCCTCCCGGCCCGGCAAATTCCAATTTTAGCAGGCCATGT
ACACCCTTGCTTTTTTGTTCGCCTTCCTCGTGCGGTGCTCGCCAATGACC
TCGTTTCCCCTCACGATTAATTCTGTGAGCTATCTTGGAAAATTTCAGCA
CATGTAGACGTACATGGGGTGAGGCGTAGTTCTGACGAATAGCCTGTGCG
CTATGCTTGGCCCCTGCTGCCTGCCCCCCTCCCCCCTCCCCGCTTTGACC
GTCCAGGCGATTCCGACATTTTCCTCGTCGGTGAAGCTATTAAAAAGTAC
CCCGAATTAGACCAGGTGTGCAACGCGCTATTACCAGAAGACGTCCAGCG
AGAAGACGACGGGACCGGAGCAGCAGCTGGGGAGGCGGGCGGCGCGGAAC
GCAGGGCGTCAGCCAAGCGCGAGGGCGAGCGGCTACACGGTATGAACCGT
GCCGGCAAGAAGAAGGCTAAAAAGGACGAGAGGGCGCAGAGCGTGGCCGA
CGCTACGGAGAAGGCCGTGAGTTCGGCCATTGCGGGATGGCACCGTTGCT
GGCATCGATGAAGCCGGACACCGCAAACGGGCGTCCCCAAACTGATGATC
CGGAGCGCCAGGTTGCAGAAATCGTCCTCGCCGACGAATGCATGACCGCC
CATGAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:438006..439114+

>mRNA_P-littoralis_Contig84.73.1 ID=mRNA_P-littoralis_Contig84.73.1|Name=mRNA_P-littoralis_Contig84.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig84:438006..439114+ (Pylaiella littoralis U1_48)
GGCAACAATCAGCCTTGGGTGAACTTCTGCCAAGGCGATTCCGACATTTT
CCTCGTCGGTGAAGCTATTAAAAAGTACCCCGAATTAGACCAGGTGTGCA
ACGCGCTATTACCAGAAGACGTCCAGCGAGAAGACGACGGGACCGGAGCA
GCAGCTGGGGAGGCGGGCGGCGCGGAACGCAGGGCGTCAGCCAAGCGCGA
GGGCGAGCGGCTACACGGTATGAACCGTGCCGGCAAGAAGAAGGCTAAAA
AGGACGAGAGGGCGCAGAGCGTGGCCGACGCTACGGAGAAGGCCGTGAGT
TCGGCCATTGCGGGATGGCACCGTTGCTGGCATCGATGA
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