mRNA_P-littoralis_Contig84.67.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig84.67.2
Unique Name	mRNA_P-littoralis_Contig84.67.2
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: D7FVT9_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT9_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 9.340e-110
Identity = 319/693 (46.03%), Postives = 360/693 (51.95%), Query Frame = 3

Query:  270 MSLEEVLLLTVPKLKAELTRLNQPIDGLKRKAQLVEALTTYIEKQQXXXXXXXXXXXXXXXXXXXXXXXXAVENEPE-HVSDAPVAPG----AEEEP-----------AAQEQVDRMDTTA------ADVPAQQAE----------------------------LAATVAXXXXXXXXXXAQTPSRKSRKRTTRMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAEEDPAVAPVRQQRGTGGDAXXXXXXXXXXXXXXXXXXXXXXXXXTAKLV-------------------GEEEVAAEAVAADDDPMGEEG-VAPSSEPGGVDPAAPGTDADADADTDAIVAGATAAEAAEPSAGSPSGKAGSGGDDGVGGGDAEEQGXXXXXTEEHAGEEEEGSG-RVAVDPVTIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARARDDDKRSNRPFSAKKRVAPVLGPRVT--SDARITAGGXXXXXXXXXXXXXXSSAVTGNGAIRVRGRGSVQAPGVPGSQGGILAANVEAEVGRGRRQEAVARGGLQQKQQQRVVEEELEPIVLDEMFRKTAAKPSLYWMPLLEEEVGERKKQMEKDGVGPRTTPMPADHVEAA 2129
            +S++EV  LTVPKLKAELTRLNQP+ GLKRKAQLVEALT YIEKQQ                        A E  P    + A V P     AEE P           AA E+V  MD  A      AD P+ Q E                             A              A+TP+R+ RKR+ R D                                                      +  +  PA    ++++ +GG  XXXXXXXXXXXXXXXXXXXXXXXXX                          EE AA A     DPM EE   APSSEPG  D +AP T            A  TAA        +P         DGV                       EG G  V  DPVTIRVDNFVRPFTA QAKKLLE+KA A V+EGGFWMD IKTHCYATFDG+EAAE+A+AALQGLQWP QSFK+LEA +GDMSAEEARARD  KRSNRPF    R A VLGPRVT  ++A+ +  G              SSAV G    RVRGRGSVQAPGV GS+GG+LAANVEAEVGR R Q+   RGGLQQ QQ    EEE EPI+LD+MFRKT AKPSLYW+PL EEEVG RKK+ME+DGVGPRTTPMPA+H+EAA
Sbjct:    6 VSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLVEALTAYIEKQQQDGGTEGSGQGKEAENAPA-----AGETSPTPEAAAAAVQPQEKDTAEENPETEPPVQXXXXAADEEVAPMDVAADSGTAEADTPSAQQEEPAVAGADNGSSSXXXXXXXXXXXXXXXXAGAQVAEPTAADASPAETPTRRGRKRSARTDDIEAAPAEQPNPSSGGDEGKEAGDKAEEQLP-----------------------KRKQSLPASPAAKRKKVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAEETAAPAA----DPMDEEEQAAPSSEPGRADASAPET------------ASTTAAAEXXGDQSAPG--------DGV-----------------------EGEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPVMEGGFWMDGIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATLGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTPTAEAKSSPEGGGQANGSGAHATDESSAVAGGSTARVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQD---RGGLQQPQQG--PEEEAEPIILDDMFRKTDAKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHIEAA 618

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: A0A6H5JTQ3_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ3_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 9.330e-97
Identity = 188/301 (62.46%), Postives = 210/301 (69.77%), Query Frame = 3

Query: 1344 VAVDPVTIRVDNFVRPFTASQAKK-------------------------------------LLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARARDDDKRSNRPFSAKKRVAPVLGPRVTS--DARITAGGXXXXXXXXXXXXXXSSAVTGNGAIRVRGRGSVQAPGVPGSQGGILAANVEAEVGRGRRQEAVARGGLQQKQQQRVVEEELEPIVLDEMFRKTAAKPSLYWMPLLEEEVGERKKQMEKDGVGPRTTPMPADHVEAA 2129
            V  DPVTIRVDNFVRPFTA QAKK                                     LLE+KA A VLEGGFWMDSIKTHCYATFDG+EAAE+A+AALQGLQWP QSFK+LEA +GDMSAEEARARD  KRSNRPF    R A VLGPRVT+  +A+ +  G              S+AV G G  RVRGRGSVQAPGV GS+ G+LAANVEAEVGR R Q+   RGGLQQ QQ    EEE EPI+LD+MFRKT AKPSLYW+PL EEEVG RKK+ME++GVGPRTTPMPA+H+EAA
Sbjct:  359 VVADPVTIRVDNFVRPFTAQQAKKVGGNASTEDDPTYPSPVFFCCASCLVFVDTPTPKPQQLLEEKAEAPVLEGGFWMDSIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSPEGGGQANGSGAHITGESAAVPGGGTARVRGRGSVQAPGVAGSRRGVLAANVEAEVGRSRGQD---RGGLQQPQQG--PEEEAEPIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEEEGVGPRTTPMPAEHIEAA 654

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: W2LHP1_PHYPR (SAP domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LHP1_PHYPR)

HSP 1 Score: 87.0 bits (214), Expect = 4.550e-15
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARA 1619
            T+R+DNFVRPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK  AAL G  WP ++ + L  K+ D +A E RA
Sbjct:  174 TLRIDNFVRPFTLNAVKTLVQELG--NFVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEVRA 257

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: A0A329SVG4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SVG4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.340e-15
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 3

Query: 1308 EHAGEEEEGSGRVAVDPVTIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARARDDDKRSNRPFSAKKRVAPV 1679
            E A + + G+ R      T+R+DNF+RPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK   AL G +WP ++ + L  K  D +A E     + K  +RP S      P 
Sbjct:  154 EKAADGDTGATREKEHRTTLRIDNFIRPFTLNAVKALVQELG--NFVEDGFWMDAIKTHCFVTYPTSEIAEKTSTALNGKEWPPENGRSLSVKFADHTAMEVSQFGETKLPSRPKSKDSNDTPA 275

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: D0NGE4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NGE4_PHYIT)

HSP 1 Score: 86.3 bits (212), Expect = 6.800e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARARDDDKRSNRP 1649
            T+R+DNF+RPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E A+K  AAL G  WP ++ + L  K  D SA E     ++   NRP
Sbjct:  163 TLRIDNFIRPFTLNAVKALVQELG--NYVEDGFWMDAIKTHCFVTYPTSEIAKKTSAALNGKVWPPENGRSLRVKFADHSAMEVSQHGEENVPNRP 256

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: A0A8J5J422_9STRA (SAP domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J422_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.490e-14
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARA 1619
            T+R+DNF+RPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK   AL G  WP ++ + L  K  D +A E RA
Sbjct:  175 TLRIDNFIRPFTLNAVKALVQELG--NFVEDGFWMDAIKTHCFVTYPTAEIAEKTSTALNGKVWPPENGRSLSVKFADHTAMEVRA 258

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: W2LJM4_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LJM4_PHYPR)

HSP 1 Score: 84.0 bits (206), Expect = 3.080e-14
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEE 1610
            T+R+DNFVRPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK  AAL G  WP ++ + L  K+ D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELG--NFVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: W2XC22_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2XC22_PHYPR)

HSP 1 Score: 84.0 bits (206), Expect = 3.080e-14
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEE 1610
            T+R+DNFVRPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK  AAL G  WP ++ + L  K+ D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELG--NFVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: V9FHA7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FHA7_PHYPR)

HSP 1 Score: 84.0 bits (206), Expect = 3.080e-14
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 3

Query: 1362 TIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEE 1610
            T+R+DNFVRPFT +  K L+++    + +E GFWMD+IKTHC+ T+   E AEK  AAL G  WP ++ + L  K+ D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELG--NFVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221

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BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Match: A0A2P4Y6Q9_9STRA (SAP domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Q9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.730e-14
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 3

Query: 1326 EEGSGRVAVDP-VTIRVDNFVRPFTASQAKKLLEDKAGASVLEGGFWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAEEARARDDDKRSNRPFSAKKRVAP 1676
            E+  G+  +D   T+R+DNFVRPFT +  K L+++    + ++ GFWMD+IKTHC+ T+   +AA+K  AAL G  WP ++ + L  K  D +A E     +    +RP       AP
Sbjct:  125 EKAQGKTEMDHRTTLRIDNFVRPFTLNAVKALVQELG--NFVDDGFWMDAIKTHCFVTYSSDDAAKKTSAALDGKVWPPENGRALSVKFVDHTAMEVSQYGESNLPSRPKRKNSNEAP 240

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig84.67.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FVT9_ECTSI	9.340e-110	46.03	SAP domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JTQ3_9PHAE	9.330e-97	62.46	SAP domain-containing protein n=1 Tax=Ectocarpus s...	[more]
W2LHP1_PHYPR	4.550e-15	47.67	SAP domain-containing protein n=6 Tax=Phytophthora...	[more]
A0A329SVG4_9STRA	5.340e-15	37.10	Uncharacterized protein n=1 Tax=Phytophthora cacto...	[more]
D0NGE4_PHYIT	6.800e-15	42.71	Uncharacterized protein n=2 Tax=Phytophthora infes...	[more]
A0A8J5J422_9STRA	2.490e-14	45.35	SAP domain-containing protein n=1 Tax=Phytophthora...	[more]
W2LJM4_PHYPR	3.080e-14	46.99	Uncharacterized protein n=2 Tax=Phytophthora paras...	[more]
W2XC22_PHYPR	3.080e-14	46.99	Uncharacterized protein n=2 Tax=Phytophthora paras...	[more]
V9FHA7_PHYPR	3.080e-14	46.99	Uncharacterized protein n=1 Tax=Phytophthora paras...	[more]
A0A2P4Y6Q9_9STRA	6.730e-14	37.29	SAP domain-containing protein n=1 Tax=Phytophthora...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig84	contig	P-littoralis_Contig84:420531..427224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FVT9
Preferred name	ACIN1
PFAMs	RSB_motif,SAP
Model size	2273
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01278,ko:K12875,ko:K13781,ko:K15559,ko:K16519,ko:K18732
KEGG TC	2.A.3.8.6
KEGG Pathway	ko03013,ko03015,ko03040,ko04974,map03013,map03015,map03040,map04974
KEGG Module	M00430
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000018,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000398,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003006,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006323,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008406,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010528,GO:0010529,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022411,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030261,GO:0030262,GO:0030263,GO:0030334,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033119,GO:0034101,GO:0034641,GO:0035262,GO:0040012,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045655,GO:0045657,GO:0045910,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051276,GO:0060255,GO:0061458,GO:0061574,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097194,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1903311,GO:1903312,GO:1903706,GO:1903708,GO:2000026,GO:2000145
Exons	5
Evalue	4.21e-111
EggNOG OGs	KOG2416@1\|root,KOG2416@2759\|Eukaryota
Ec32 ortholog description	SAP domain
Ec32 ortholog	Ec-01_002110.1
EC	3.4.14.5
Description	apoptotic chromosome condensation
Cds size	2016
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03019,ko03021,ko03041,ko04090,ko04147

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig84.67.2	prot_P-littoralis_Contig84.67.2	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig84 420788..427224 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791705.077201-UTR-P-littoralis_Contig84:420530..420787	1680791705.077201-UTR-P-littoralis_Contig84:420530..420787	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig84 420531..420787 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791705.0891392-CDS-P-littoralis_Contig84:420787..420916	1680791705.0891392-CDS-P-littoralis_Contig84:420787..420916	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig84 420788..420916 +
1680791705.0983644-CDS-P-littoralis_Contig84:423126..424155	1680791705.0983644-CDS-P-littoralis_Contig84:423126..424155	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig84 423127..424155 +
1680791705.11603-CDS-P-littoralis_Contig84:424824..425019	1680791705.11603-CDS-P-littoralis_Contig84:424824..425019	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig84 424825..425019 +
1680791705.133416-CDS-P-littoralis_Contig84:425654..426089	1680791705.133416-CDS-P-littoralis_Contig84:425654..426089	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig84 425655..426089 +
1680791705.1486354-CDS-P-littoralis_Contig84:426996..427224	1680791705.1486354-CDS-P-littoralis_Contig84:426996..427224	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig84 426997..427224 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig84:420531..427224+
coding sequence from alignment at P-littoralis_Contig84:420531..427224+

protein sequence of mRNA_P-littoralis_Contig84.67.2

>prot_P-littoralis_Contig84.67.2 ID=prot_P-littoralis_Contig84.67.2|Name=mRNA_P-littoralis_Contig84.67.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=672bp
MADLMSLEEVLLLTVPKLKAELTRLNQPIDGLKRKAQLVEALTTYIEKQQ
QQAEETPTATAAASPTAAAAAATAAVENEPEHVSDAPVAPGAEEEPAAQE
QVDRMDTTAADVPAQQAELAATVAAAAAPAPAPPAQTPSRKSRKRTTRMD
DEEASTGKPRAAAAAASSDEQTTTTGGEEQQSSPSQVSAPAAKRKKIIFS
EENTEAAEEDPAVAPVRQQRGTGGDADAEKGNGTGHDNGTATATATATAT
TTAKLVGEEEVAAEAVAADDDPMGEEGVAPSSEPGGVDPAAPGTDADADA
DTDAIVAGATAAEAAEPSAGSPSGKAGSGGDDGVGGGDAEEQGAGSDGTE
EHAGEEEEGSGRVAVDPVTIRVDNFVRPFTASQAKKLLEDKAGASVLEGG
FWMDSIKTHCYATFDGREAAEKAIAALQGLQWPVQSFKKLEAKIGDMSAE
EARARDDDKRSNRPFSAKKRVAPVLGPRVTSDARITAGGGGGGGKANGSG
TGDSSAVTGNGAIRVRGRGSVQAPGVPGSQGGILAANVEAEVGRGRRQEA
VARGGLQQKQQQRVVEEELEPIVLDEMFRKTAAKPSLYWMPLLEEEVGER
KKQMEKDGVGPRTTPMPADHVEAAGGGRSARGNRGSGGGGGGGGWGGGGG
GRRGSGGGGAPFRQGGYGRRR*

mRNA from alignment at P-littoralis_Contig84:420531..427224+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig84.67.2 ID=mRNA_P-littoralis_Contig84.67.2|Name=mRNA_P-littoralis_Contig84.67.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6694bp|location=Sequence derived from alignment at P-littoralis_Contig84:420531..427224+ (Pylaiella littoralis U1_48)
AAGGACGGGAGTCGCGCCGGCGCACATCGAGTGTATCTTTGCTACCACCC
CGACCTTTTGCCCGAGCCTGTAGATCGATCTGGCCTTGTGCGTTGTGTTT
TACATAGACGTTGCGCGGGTGAAAACTCCCGGCGGGGTCTGTGGATTAGA
GAGAGACCTCCAGGACCTCAGAGAGCAGAGCAGAGACATCAGCGAGACAG
AGAGGGACATCTAGGCAGAGAGAGACAAGAAGAGGAGGAAGAGCCTTGTT
TGCTGAGATGGCCGACCTGATGTCATTGGAGGAGGTGCTATTGCTGACAG
TGCCAAAGCTGAAGGCCGAGCTTACGAGGCTGAACCAGCCCATTGATGGG
CTCAAACGCAAGGCTCAGCTGGTGGAGGCGCTCACCGTAAGTAACTTCGA
GAGGTCATATCATATCTAGATCATATCAACCAAAAGGCAAGCACCGCAGA
GGGAATTGGAGCAAAAAAAAAAAAACTCCTGTGTTGACTTCCCCCTGTGT
GACTCCGGTTGGAGCGTCTACCTACCCGAAAGGTGTAGAGTGGCGTCCAA
TTGAAGGGATGACAACACACACAGACAACTCCGGAGTATGTACGAACTAC
TTCGTTGTTGTTGTTTATTCTTATATTAAGTACTTCTGTATGATAGGATA
CGAGGTTCCAAAATTGATTTACAATTTACTTACAGTATGTGCCAACACCA
CCATCGAGATTTTCGTACCAGGTACAGCAGTATCGAACAGCAGAACAGCA
CAACAGCAGTACTCCTATATAATACTTGAGAAGTACGATACAAAATATCC
TTTTCAAGGTGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCA
CCCTGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAG
GAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGC
GTGAGATAGTATCCTTCGTGTCACACGTCAAGGATTATGCACCGAGTACA
GCTTGCGAACTGCTGCGTACAGCAGTGAGTACTGCTGTGAGTGAGTGCTT
CTGTACAGCAGTAGATGGAAATCCCGCCAACTTCAAAATGCCATGTCGGG
GTGTGTCTCCTGTGTGTGTGTGTGTGTTGTCATCCCTTTAATTTGTGTAA
CTAAAAACCCTGTTGTTCACCCCTTCCCCGTTCTCGTCGCCCCCTCGAGA
CGCGTATGATATCTCATCAGTCGCTCGCGCTTGTGGCGTGTTGTGGTGGC
TGTGGTAGAAATCATGTGCTACAGGTCGTGCTGGCCTGCTTTGGTGTTGT
GTGTGTGTGTGTTGCCATCCCTTTAATTGGACGCCACGCTACTCCTTTCG
GGTAGGTGGACGCTCTAACCGAGGTCACACAGCAGTACAGCAGTAGTAGG
GTAGGAAGTCAACACATGAGTTTTTTTTTTTCTCCACTTCCCACTGCGGT
ACTTGCCTTTTTTCTGATTTTTTGTCGCGAGAAGGGTACAGCCGTCATTT
TCCGTCGTCGATAATTCAATCAAATTTCTGTATAAATTGTAAATCATCGT
CTGTCCCCTCACAGGATGCGGCGAAAAGCGATTGTTTCGTTCAACCAGCG
TTCAACTCTTGAAAAGATTACGTTGAGTACACAGCAGCCTTGTCTCTCTG
AGAGGGTTTAGTTGCGACTTTACAGCAGTGGGGAGCGATTTGTCAGTGAG
TCAACAACAGAGAAGGGATCGATGAACCCGACTCGCATCAAAAATCAGAG
GCAAGTATCATACCTGCTGTATCACAGGAGGAGAGGTGTGGGCAATAAGA
AATAAAATCAAAAATAAAAAGCTCGTGTGTGATCTTCCTTCTGTGCAATC
CCGGCTGGTGCACCCACTTGATACCGAAAGGTTTAGACCGGTGCCCAGGA
TACACTGGATGAACACACACATTGTCTGGAAGAAATATACCGCACTTCGA
AGCATCATTTCAAGACTAGAAGGGAGTCTTCGGGTATATATCCCCATATG
ATGTGAGACGGACGTGAAACACACGCACTCTTAAGGACGAGATACATGAC
ATGTCGTGTGTCACACGAGCAGCCATCTGATGAGTCGTGGAAACCCAGGG
AGATGTACTGTAGCGATTTTTGGTTACACAAGTAAGCGTTGCGTCAGGCG
CTCTGCGCGATACGCACAACAGCATTTCTTCTCTGCTTCATTACTTTGAC
CGACACCTTGTTCGGGCAATGGCACGATTCTCGTCGTTGGGGGAATGTTG
CACGCACCCCTTCTTTCGTAAACCTTCCCAAGAGTTGTTGTGTACGTTTC
CGTGGTCTGTCTTTGCATTTTGACACGGAAGACGTGTGGATGTTTTGACG
GTTTTGCGGTCGAGTTGTTCGTCGGAGTCACACGTCCCGGTAGCGAGCAG
CAGCCGCAGCAGCAGCGCGCAAACCACATGCGATCGGAAGCGTCCCCTCC
ATCTGCAGCAGATGTGAACCCACCTCAGGATCAAAGCATCCCCATGATGT
ATGGTTTCGTCTACCATCCTTCCGAAGCATCCTTCGCTATATTTGGTATG
GAGAACCTTCAATCTGCACCCCAACATTCGTTCACCGTTCCACCAGACGT
ACATCGAGAAGCAACAGCAGCAAGCAGAAGAGACCCCGACAGCCACCGCT
GCGGCCTCACCAACAGCAGCAGCAGCAGCAGCAACTGCAGCAGTAGAAAA
CGAACCCGAGCACGTTTCAGACGCTCCCGTCGCTCCGGGTGCTGAGGAGG
AACCCGCCGCCCAAGAGCAGGTTGATCGCATGGACACCACGGCCGCTGAC
GTGCCGGCGCAGCAAGCAGAACTGGCGGCGACGGTGGCGGCGGCAGCGGC
ACCTGCACCAGCACCCCCCGCTCAAACCCCCTCTCGCAAGAGCCGCAAGC
GCACAACTAGAATGGACGACGAGGAAGCTTCTACCGGGAAGCCCAGGGCT
GCTGCCGCCGCCGCCTCCAGCGACGAACAAACAACAACGACAGGAGGAGA
AGAGCAGCAGTCGTCGCCGTCGCAAGTGTCGGCCCCGGCTGCGAAACGCA
AGAAAATTATTTTCTCGGAGGAGAACACGGAGGCCGCCGAGGAAGATCCG
GCGGTGGCGCCGGTGCGGCAACAGCGAGGCACGGGTGGCGATGCCGACGC
CGAGAAGGGAAATGGAACCGGGCACGACAACGGCACCGCCACCGCCACCG
CCACCGCCACCGCCACCACAACCGCCAAGTTGGTGGGTGAGGAGGAAGTG
GCGGCAGAGGCGGTGGCCGCTGACGACGACCCGATGGGCGAAGAAGGGGT
CGCGCCGTCTTCCGAGCCTGGGGGCGTCGACCCTGCCGCCCCCGGCACCG
ATGCCGATGCGGACGCCGACACCGACGCCATCGTCGCGGGTGCGACTGCT
GCTGAAGCGGCAGAGCCATCGGCTGGTTCTCCCAGTGGAAAGGCTGGTAG
TGGTGGTGATGACGGTGTTGGCGGCGGTGATGCGGAGGAGCAGGGGGCTG
GCAGTGATGGCACCGAGGAGCACGCCGGCGAGGAGGAGGAAGGGAGCGGT
AGGGTGGCGGTGGATCCGGTTACGATCCGGGTGGACAACTTCGTGCGGCC
GTTCACAGCATCCCAGGCAAAGAAGGTGAGTGACGCATCCGATCCATGCA
TGCGCGACTGGATTGCTTGTGACTGTAGAGACGACGAGAGCTTTGGCATC
GCTTCACTGGAGACAGGTCCTTTTGTGCTTTATGCTGTGTTGCCGGGCAT
GGCTTGCGAGAATGTCGTTTTTTTCTCTTCTTATTTTCCGCCAATAATCT
TTTTGATTTATACTTCGAAGTATGTACAACCAGGTATTGTCTGCAAACAC
CAGTAACTCATGAGCCTTCGTGCGATATGATACTCCTGCCGCAAGTTCCA
AGGAATGCCTGCATACGTGGCTTTTTTTTCGATATCCACCGGGTACAAGT
AGAAACATACTTTTGTTTCACGTTTCCTATCCTACAAACGCAACTTGAAA
GTGGCGACGTCCTACGAAGTTCTGCTGTTAGCTGCTACTACTCGTACGCA
CCAACTTGTTTTTGATGCTCTCGACCCCTCTCCTGTCAGTTGTCGCACAG
CACACCCATCTTATCGCACACACCTACAATGTGCGTGCTCCACGTGTACG
CGGTACTGCTGTGACACACAAGGCGACTCCCAAATTGTCATCTATTAGCT
CTTGGAGGACAAGTCAAGGCCAGAACGCCTGTGTTGTATGCCCCCCCCCC
CCCCTCCCCTCGACCTCACGAACACCGAATCCCCAACTTATCAGCTGTTG
GAGGACAAGGCCGGAGCTTCGGTTCTCGAAGGCGGCTTCTGGATGGACAG
CATTAAGACGCACTGCTACGCCACCTTCGACGGAAGGGAGGCGGCCGAGA
AGGCGATTGCCGCGCTGCAGGGCCTCCAGTGGCCCGTCCAGAGCTTCAAG
AAGCTCGAGGCCAAGATCGGAGACATGTCCGCGGAGGAGGTGGGTGGTGG
GCGGGAGGAGTCGCCCCCTAATTTAGCGGCTGCTTCTTGTCTTTGTCTGA
TTGATTGATTGGTTGATTGGGTGGAGTCGGGGACGAATTTATACCCTCCG
CTTTTTTCCGGGCAACCGCGTGGGTGGGAGAAAGATCCTGTTATTTTCTC
GTCGATGTGCTTGGCGGTTTCGAAGAATGTGCTGGAGGCTTTCGACCCCA
AAGGACAACCGTTCTTTTTTTTTTTTCGTCCGTTCATCTAGCTAGCATTG
AGCTATCTTGGTTTTGTTTCGTGGATTTCATGTTTTGCAGCTGCAACGTC
AAACTGAGCGCTGCGTGTGTTTTTCGTCAAACCAGCCAACCAACAAAGCA
GTGCTCATCTCGGTCTTTTGATCTAACTCGCACCTTCCTTTCTTTCCGCC
CACTCACCCACCCGTCCCTCCGTCCGTCCGTCCGTCCGTCATTCCGTCGT
TCCGGGTTTGCACATGCTCGCTCGCCGTCTCTGCGGGTGCCAAAACTCAC
AAACCACCCGGCATGGTCCACGCCGCTGACGGACGGAAACGGATGGAAAC
GAAACGAATCGCGATGCCCCTCCCCAACGACATGACGTAAAAAATAAAAT
AAATCATTTAATTCAATGAAAAAGGCGAGGGCGCGGGACGATGACAAGCG
CTCGAACCGACCCTTCTCCGCAAAAAAGCGCGTCGCTCCCGTCCTGGGCC
CCCGCGTCACTTCAGACGCGAGAATCACGGCCGGAGGAGGCGGTGGCGGC
GGCAAGGCAAACGGCAGCGGCACCGGCGATTCGTCGGCAGTGACCGGGAA
CGGCGCCATTCGCGTGCGGGGAAGGGGGTCGGTGCAGGCGCCGGGAGTTC
CCGGGTCGCAAGGAGGCATTTTGGCTGCGAACGTGGAGGCGGAGGTTGGC
AGGGGCCGGCGACAGGAGGCGGTGGCGCGAGGGGGCTTGCAGCAGAAGCA
GCAGCAGCGGGTGGTGGAGGAGGAGTTGGAGCCTATAGTTCTAGACGAGA
TGTTCAGGAAGACGGCCGCGAAGCCGTCGCTCTACTGGATGCCGCTGTTG
GAGGAAGAGGTGGGCGTAACGAGTATCGGGCGGGGGGGGGGGTGATGGTG
TTGACTGCTTTCTTGCTTTCCGAGTGTGAATTATACAAAACGTATACTAT
GAAACATGCATTGTACTTCGTAGATTGGTGTCGGTTGGTGTGACTGGCGA
TGTTTTTAGAGGGTGGAGGAGGGTGACAGGCTACCGTTTTCGGAAGGAGA
AATCTGCTCGCCGTGCGCGGTGGGTGGTCATGGCGTTTCGAGTGGGAATT
ACAGGTGTGGATGGGAGAAAGTCAACCACAGCTGCGGTCGGTATATGCGC
TCTACTGCTGTCAGGTTGGTTGTGTCTCTGCGTGTGCGTGTTTTCGCCAG
AGCTGGATGAAGCACCGCGGAGTACATCGCAAGGACGCTTGGTTCACCGG
TATCCCATTCCTTGAACAAGCATGGCACTACGCCCCCCTCGGTGTACCGT
CTCGGCCCCCTTAAGAATGGCGAGTCTGCGCACAGTATGCCTCATTTGAC
CTCTTCTACTGCGCAAATCAATGTGCTTGCTAGTTGCCCAATCGTACATA
CGAAAGGCGCTTGGATGTGACTATGATAGGCGGCCTTGGCTTGGACGCAT
GAGGCATCAAGATCGAAAACGATACATACATTGCCGCTTTGCGAATGAGC
TCCAGTCACACCCCCCACGGCACCTTCTCGCCGCGAAACGTGTGTATGTA
GCTGTAGCTTTTCACGTTTTCCGGCGAGATTTTTCGTCCCACCCAAGGCA
AGTGCCGTGTGGGATATCTACACTTTTACCGAATCGACAACCATTTATCT
TCTAAGTACGTTTTTATCAAATCTTCCATGAAATATTCAATATTCTTACG
CACGCACCCACGCACGCACAATATCTTGTTGGATTGGAACCCCCCCCCCC
TACTCGCGGCCGGCAGGTAGGAGAGCGGAAAAAGCAGATGGAGAAAGACG
GCGTGGGGCCGCGAACAACGCCCATGCCCGCTGACCACGTCGAGGCCGCT
GGCGGAGGGCGAAGCGCCCGCGGAAACCGAGGAAGCGGGGGCGGCGGGGG
AGGTGGCGGGTGGGGTGGGGGAGGTGGGGGCAGGAGGGGGAGCGGGGGTG
GCGGCGCCCCCTTCCGCCAGGGCGGGTACGGACGGCGTCGATAG

Coding sequence (CDS) from alignment at P-littoralis_Contig84:420531..427224+

>mRNA_P-littoralis_Contig84.67.2 ID=mRNA_P-littoralis_Contig84.67.2|Name=mRNA_P-littoralis_Contig84.67.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2016bp|location=Sequence derived from alignment at P-littoralis_Contig84:420531..427224+ (Pylaiella littoralis U1_48)
ATGGCCGACCTGATGTCATTGGAGGAGGTGCTATTGCTGACAGTGCCAAA
GCTGAAGGCCGAGCTTACGAGGCTGAACCAGCCCATTGATGGGCTCAAAC
GCAAGGCTCAGCTGGTGGAGGCGCTCACCACGTACATCGAGAAGCAACAG
CAGCAAGCAGAAGAGACCCCGACAGCCACCGCTGCGGCCTCACCAACAGC
AGCAGCAGCAGCAGCAACTGCAGCAGTAGAAAACGAACCCGAGCACGTTT
CAGACGCTCCCGTCGCTCCGGGTGCTGAGGAGGAACCCGCCGCCCAAGAG
CAGGTTGATCGCATGGACACCACGGCCGCTGACGTGCCGGCGCAGCAAGC
AGAACTGGCGGCGACGGTGGCGGCGGCAGCGGCACCTGCACCAGCACCCC
CCGCTCAAACCCCCTCTCGCAAGAGCCGCAAGCGCACAACTAGAATGGAC
GACGAGGAAGCTTCTACCGGGAAGCCCAGGGCTGCTGCCGCCGCCGCCTC
CAGCGACGAACAAACAACAACGACAGGAGGAGAAGAGCAGCAGTCGTCGC
CGTCGCAAGTGTCGGCCCCGGCTGCGAAACGCAAGAAAATTATTTTCTCG
GAGGAGAACACGGAGGCCGCCGAGGAAGATCCGGCGGTGGCGCCGGTGCG
GCAACAGCGAGGCACGGGTGGCGATGCCGACGCCGAGAAGGGAAATGGAA
CCGGGCACGACAACGGCACCGCCACCGCCACCGCCACCGCCACCGCCACC
ACAACCGCCAAGTTGGTGGGTGAGGAGGAAGTGGCGGCAGAGGCGGTGGC
CGCTGACGACGACCCGATGGGCGAAGAAGGGGTCGCGCCGTCTTCCGAGC
CTGGGGGCGTCGACCCTGCCGCCCCCGGCACCGATGCCGATGCGGACGCC
GACACCGACGCCATCGTCGCGGGTGCGACTGCTGCTGAAGCGGCAGAGCC
ATCGGCTGGTTCTCCCAGTGGAAAGGCTGGTAGTGGTGGTGATGACGGTG
TTGGCGGCGGTGATGCGGAGGAGCAGGGGGCTGGCAGTGATGGCACCGAG
GAGCACGCCGGCGAGGAGGAGGAAGGGAGCGGTAGGGTGGCGGTGGATCC
GGTTACGATCCGGGTGGACAACTTCGTGCGGCCGTTCACAGCATCCCAGG
CAAAGAAGCTGTTGGAGGACAAGGCCGGAGCTTCGGTTCTCGAAGGCGGC
TTCTGGATGGACAGCATTAAGACGCACTGCTACGCCACCTTCGACGGAAG
GGAGGCGGCCGAGAAGGCGATTGCCGCGCTGCAGGGCCTCCAGTGGCCCG
TCCAGAGCTTCAAGAAGCTCGAGGCCAAGATCGGAGACATGTCCGCGGAG
GAGGCGAGGGCGCGGGACGATGACAAGCGCTCGAACCGACCCTTCTCCGC
AAAAAAGCGCGTCGCTCCCGTCCTGGGCCCCCGCGTCACTTCAGACGCGA
GAATCACGGCCGGAGGAGGCGGTGGCGGCGGCAAGGCAAACGGCAGCGGC
ACCGGCGATTCGTCGGCAGTGACCGGGAACGGCGCCATTCGCGTGCGGGG
AAGGGGGTCGGTGCAGGCGCCGGGAGTTCCCGGGTCGCAAGGAGGCATTT
TGGCTGCGAACGTGGAGGCGGAGGTTGGCAGGGGCCGGCGACAGGAGGCG
GTGGCGCGAGGGGGCTTGCAGCAGAAGCAGCAGCAGCGGGTGGTGGAGGA
GGAGTTGGAGCCTATAGTTCTAGACGAGATGTTCAGGAAGACGGCCGCGA
AGCCGTCGCTCTACTGGATGCCGCTGTTGGAGGAAGAGGTAGGAGAGCGG
AAAAAGCAGATGGAGAAAGACGGCGTGGGGCCGCGAACAACGCCCATGCC
CGCTGACCACGTCGAGGCCGCTGGCGGAGGGCGAAGCGCCCGCGGAAACC
GAGGAAGCGGGGGCGGCGGGGGAGGTGGCGGGTGGGGTGGGGGAGGTGGG
GGCAGGAGGGGGAGCGGGGGTGGCGGCGCCCCCTTCCGCCAGGGCGGGTA
CGGACGGCGTCGATAG