mRNA_P-littoralis_Contig84.56.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A6H5JRG4_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG4_9PHAE) HSP 1 Score: 527 bits (1357), Expect = 9.550e-178 Identity = 343/489 (70.14%), Postives = 382/489 (78.12%), Query Frame = 3
Query: 237 LRARPLLVAAALVALSMSTSSQLAAATILPRSRWVDGSSAVTGRLHDSSSRQHGQAARAVXXXXXXXXXXXXXXXXXXXXADGDDGSLETPESSVGKSGFSATVKEAVSKLIDIVGSLLWGRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAASFEAKYGKSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKALADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKASFSYPGDSGVTIEDAGLGKQALLVVEQKPEEA 1703
LRA PLL A LVA+++ST+ L A LPRSRWV SS G LHDSS+ + ARAV +G+D + E P S + + G +ATVKE +SKL +V SLL G+ S XXXXXXXXXXXXXXXXXXXXX F +FEAKYGK HP+FNE +FGDATETAW RNRLCLVYIAA KG GGKAAKVDDAICKALADPEVA+FIDSSFV+WVPGGKSSAQR AASA AAKRVGARSLPFLGVVNSAS T+KMT+ER L+RSTVAMHHCNPPP+A QMVSWMARVLELKK LLEVE AEQQRLKDE+TIYTERVEGYSKSLKDDALREV+E +EEA+XXXXXXXXXXXXX ELGQEPPESA+KGAEA AATLMLRL++GSR+RRRFLRSDPMGKVLDWADVQGVDL+ QRLSST+ KASFS+PGDSG+TIE+AGLG+QALL VEQKP+ A
Sbjct: 16 LRAGPLLFVA-LVAVNLSTAPLLVTAKSLPRSRWVAASSN-GGSLHDSSASSN---ARAVAVGVRCGATSSGKED------EGED-TDEPPRSPLSEGGLAATVKETISKLTGVVRSLLGGKGSKSGXXXXXXXXXXXXXXXXXXXXXGG--------FTEAFEAKYGKRHPKFNEKSFGDATETAWGRNRLCLVYIAAEKGSGGKAAKVDDAICKALADPEVAEFIDSSFVMWVPGGKSSAQRVAASAAAAKRVGARSLPFLGVVNSASETDKMTLERKLERSTVAMHHCNPPPSASQMVSWMARVLELKKNLLEVELAEQQRLKDEDTIYTERVEGYSKSLKDDALREVREREEEAEXXXXXXXXXXXXXVLEAKQREDVERREKKAAELGQEPPESAVKGAEAKAATLMLRLADGSRIRRRFLRSDPMGKVLDWADVQGVDLDAQRLSSTMPKASFSHPGDSGMTIEEAGLGRQALLFVEQKPKGA 484
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: D7FVT5_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT5_ECTSI) HSP 1 Score: 301 bits (770), Expect = 8.040e-94 Identity = 158/215 (73.49%), Postives = 176/215 (81.86%), Query Frame = 3
Query: 1059 MTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKASFSYPGDSGVTIEDAGLGKQALLVVEQKPEEA 1703
MT+ER L+RSTVAMHHCNPPP+A QMVSWMARVLELKK LLEVE AEQQRLKDE+TIYTERVEGYSKSLKDDALREV+E +EEA+ ELGQEPPESA+KGAEATAATLMLRL++GSR+RRRFLRSDPMGKVLDWADVQGVDL+ QRLSST+ KASFS+PGDSG+TIE+AGLG+QALL VEQKP+EA
Sbjct: 1 MTLERKLERSTVAMHHCNPPPSASQMVSWMARVLELKKSLLEVELAEQQRLKDEDTIYTERVEGYSKSLKDDALREVREREEEAERARLAEEQRVAQEALEAKLREDVERREKKAAELGQEPPESAVKGAEATAATLMLRLADGSRIRRRFLRSDPMGKVLDWADVQGVDLDAQRLSSTMPKASFSHPGDSGMTIEEAGLGRQALLFVEQKPKEA 215
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A835Z0S3_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S3_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.330e-48 Identity = 138/329 (41.95%), Postives = 191/329 (58.05%), Query Frame = 3
Query: 717 ASFEAKYGKSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKALADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLK----ASFSYPGDSGVTIEDAGLGKQALLVVEQK 1691
A F +YG HP F E T+ ATE A N+ LV++ + KGG K ++ DDAI ++ DP V FI+ F+L+ G S + A AA+R GA+SLP+LGV+ T+ + KR+ V +HHCNPPP+AG +V WM+++LE+K G+LE + E RL E + ER +GY++++ D + KE++E A XXXXXXXXXXXXXXXXX LG EP GA A A + LRL +G R RRRFL SD ++ DWADV GV+LE RLS ++ + + G T+E AGL + L++VE +
Sbjct: 72 ARFARRYGAKHPIFFEGTYKQATEAALRANKFTLVFLTSEKGG--KKSRADDAIARSFTDPAVISFINEHFILFAAAGPSPS-----GADAARRTGAKSLPYLGVIR--------TVAKDSKRALVGLHHCNPPPSAGGLVKWMSQLLEVKGGVLEADKTELARLAVEANLAKERQKGYAEAVMVDQKQIRKEKREAAAKAKEEAERLAAEAAXXXXXXXXXXXXXXXXXXLGDEPAA----GAAAAAVEVALRLPDGRRERRRFLLSDDTERLYDWADVLGVELEASRLSRGGVRRGQEGAVDLAAEQGKTLEAAGLTGRVLVLVEAR 381
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A4D9D9P8_9STRA (UAS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9P8_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.250e-23 Identity = 114/337 (33.83%), Postives = 165/337 (48.96%), Query Frame = 3
Query: 711 FAASFEAKYGKSHPEFNEN-TFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKALADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKA--------SFSYPGDSGVTIEDAGLGKQALLVVEQKP 1694
F ++FE ++G +H F E + A A A R +VY+ + K K A C+ L P + +F ++FVLW P S+ R A K + AR P+L VV+ K E S ++HH PPPT Q + W+ R +E+ +L+ + E+ + E + E+ + YSK+L+ D RE KE E XXXXXXXXXXXXXXXXXX LG EP E A K A M L+ ++ R F + + +V DW DV+G++ E + L +F+YP D +++ DAG+G Q LL+VE P
Sbjct: 100 FTSTFEKEFGAAHVPFLEAPSLPLALAQARASCRFLIVYLPSSSPRDEKRHK---AFCRTLTAPSLHRFAAAAFVLWAPPPASAPYR-----TAGKELKARHFPYLAVVHGGK---KGGREEGRVVSVKSLHHFRPPPTPEQAIMWLNRTMEIHGHILDADKTERDFVLRERKLQLEQKQEYSKALQSDRKREAKERAE-------AXXXXXXXXXXXXXXXXXXARRARKKAALGAEPKEGAGKSV-CRIAVRMPGLNGQKKLHRAFRSDESLEQVFDWMDVEGLE-ELEGAKMVLAGGRGKGGKGLAFTYPQDCKMSLADAGIGGQVLLLVESGP 416
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A5J4Z6R3_PORPP (FAS-associated factor 2-B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6R3_PORPP) HSP 1 Score: 90.5 bits (223), Expect = 2.030e-15 Identity = 119/339 (35.10%), Postives = 171/339 (50.44%), Query Frame = 3
Query: 711 FAASFEAKYGKSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKA-LADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARS------LPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNP---PPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE--LGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKASFSYPGDSGVTIEDAGLGKQALLVVEQK 1691
FA FEA +G +H F + A TA + LVYI + + ++ C++ L D +V +FID +F+ W AAS A+ V ARS LP L +V + +AM N P A + WM RV E + G+ + A QQ ++ N + ++ +D+ + EE XXXXXXXXXXXXXXXXXXXXXXXXXXXXX + LG+EPP A A+++LR+ +GSR RRFLR + + DWAD GV++ L S+ + +F YP D ++I +AGL A+L++E++
Sbjct: 155 FAIKFEASFGNTHARFTRTSLVQALRTAGREYKFALVYIH------DENREACNSFCRSVLQDGQVIRFIDEAFIFW-----------AASTRFAETVQARSEFRLTHLPALAIVEGHPTRPPGRV--------IAMKQANAFGGPMDAAGVFQWMQRVQE-RYGVSLISARIQQEERETNRLLRQQ--------QDEEFQRALEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQELLGEEPPAQG-----AVTASVVLRMPDGSRNTRRFLRDTKLEMLFDWADTLGVEIGQALLVSSYPRRAFKYPEDKDMSIAEAGLTPSAMLLIEER 454
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A7S3EE78_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EE78_9RHOD) HSP 1 Score: 85.5 bits (210), Expect = 7.570e-14 Identity = 95/335 (28.36%), Postives = 150/335 (44.78%), Query Frame = 3
Query: 711 FAASFEAKYGKSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICK-ALADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARV-----LELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKASFSYPGDSGVTIEDAGLGKQALLVVEQKPE 1697
F F+ Y HP F E T+ +A A AR + LV++ + + C+ L EV ++ID + + W G S A + +G + PF+ ++ S + V + N AG + W+ + L + L VE ++ R + ++ Y ++L+ D RE ++ Q XXXXXXXXXXX LG+EP KG T T+ LRL +G RV RRFL SD + + DWAD+ GV +E L S+ + ++ YP D+ T+E+AGL + +L+VE++ +
Sbjct: 139 FVRRFDILYSNLHPRFFEGTYLEALAAAGARFQFLLVFLHS------EMHPASVRFCRQVLGSREVIRYIDENVIFWARGIASPEGYRAQ-----RLLGVTTYPFVALITSPPG----------RSDGVTLSEYNSD--AGDFLQWLQTMSARFGTTLTRRRLHVEERDEAR-----QLREQQDREYHETLEADRRREQAAKEAAEQAAEQERLKREXXXXXXXXXXXLVERREGKRVALGEEPE----KGPGVT--TIGLRLPDGKRVDRRFLVSDKVAILFDWADINGVSIEHAALVSSFPRRTYQYPEDADKTLEEAGLSQGTMLLVEERAD 439
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A1Z5JVV9_FISSO (UBX domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVV9_FISSO) HSP 1 Score: 62.0 bits (149), Expect = 2.760e-6 Identity = 103/339 (30.38%), Postives = 153/339 (45.13%), Query Frame = 3
Query: 741 KSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKALADPEVAKFIDS---------SFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVVNSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDP----MGKVLDWADVQGVDLETQRLSSTLL-KASFSYPGDSGV-TIEDAGLGKQ-ALLVVEQKPEEACS 1709
K +P + DA + A +++RL LV I + + AA D ++ EVAK + SF+LW KS + VAAKR+ P V+ A+ T + ++ HHCNPPP A M SW+ + + K L + + Q + E I ERVEGY S+ + R++ E+ XXXXXXXXXXXXXXXXX E P+ A+ + TL +R ++G+ +R+F DP + V +W DV + + +TL K +F + + ++ + G GK A V E EEA S
Sbjct: 197 KGYPAIEGGSIQDALQLARSQSRLLLVLIPSNRPDRQTAA--DKTAIESFLSVEVAKMAEKPAHKSIPTPSFLLWSAKAKSPE-----AVVAAKRLNLEPNPKRPVLLVATSKQAST---TASCQVLSQHHCNPPPNATTMASWLNTIRKRHKNLYQ----KMQHAQKELQIAQERVEGYRTSIVQERQRQIDEQ-----------XXXXXXXXXXXXXXXXXEAIKQRRAEFSATLPDPAVG-----SMTLAVRFADGTSHQRQF---DPETATLETVFNWVDVVAQQEREKVVLTTLNGKQTFKWEEEHKTRSLGEMGWGKMVAFRVTEATSEEAMS 502
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Match: A0A152AA02_9MYCE (UAS domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152AA02_9MYCE) HSP 1 Score: 59.3 bits (142), Expect = 1.210e-5 Identity = 92/327 (28.13%), Postives = 151/327 (46.18%), Query Frame = 3
Query: 732 KYGKSHPEFNENTFGDATETAWARNRLCLVYIAAGKGGGGKAAKVDDAICKA-LADPEVAKFIDSSFVLWVPGGKSSAQRAAASAVAAKRVGARSLPFLGVV--NSASLTNKMTMERSLKRSTVAMHHCNPPPTAGQMVSWMARVLELKKGLLEVEAAEQQRLKDENTIYTERVEGYSKSLKDDALREVKEEQEEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGQEPPESALKGAEATAATLMLRLSNGSRVRRRFLRSDPMGKVLDWADVQGVDLETQRLSSTLLKASFSYPGDSGV----TIEDAGLGKQALLVVEQK 1691
+YG +HP F + ++ +A A ++ ++ L+YI + K + CK L E +FIDS++V+W +S +A+ A + P+LG++ NS S + T + S V++ Q++S M + E+ L V +EQ + + + I E+ E Y SLK D +E XXXXXXXXXXX XX QEP K A ++LS+G+R++R FL++D +G ++D+ D + + + + +L S YP S + TI + GL ALL + +K
Sbjct: 54 RYGSTHPSFRQGSYNEAVSFAKSKFKILLIYIHSSKHPNSQQ------FCKEILFTREFKEFIDSTYVIWACDISTSIGFKVFNAMRAS-----TFPYLGMLCCNSISGLTQGTQTKIEDFSGVSLQL-----PRDQIMSNMTGIYEIYGPHLVVAKSEQDQREQDRFIRQEQDEAYLISLKQDQEKERLXXXXXXXXXXXXXXXXXXEXXRLQKESEMLDRKESKKIRFEQEPTGPVSKVA--------IKLSDGTRIQRNFLKTDTIGDIMDYIDTK----IQEPIDNYILMTS--YPKKSLMNLDKTIFEEGLFPDALLFLSEK 350 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig84.56.1 >prot_P-littoralis_Contig84.56.1 ID=prot_P-littoralis_Contig84.56.1|Name=mRNA_P-littoralis_Contig84.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=534bp MLLGCSNRRQQQATLLRARPLLVAAALVALSMSTSSQLAAATILPRSRWVback to top mRNA from alignment at P-littoralis_Contig84:388117..397131+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig84.56.1 ID=mRNA_P-littoralis_Contig84.56.1|Name=mRNA_P-littoralis_Contig84.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9015bp|location=Sequence derived from alignment at P-littoralis_Contig84:388117..397131+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig84:388117..397131+ >mRNA_P-littoralis_Contig84.56.1 ID=mRNA_P-littoralis_Contig84.56.1|Name=mRNA_P-littoralis_Contig84.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1602bp|location=Sequence derived from alignment at P-littoralis_Contig84:388117..397131+ (Pylaiella littoralis U1_48)back to top |