mRNA_P-littoralis_Contig84.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.52.1
Unique NamemRNA_P-littoralis_Contig84.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:369990..373563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMU2
PFAMsPrmA
Model size2281
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000201
EggNOG OGsCOG2264@1|root,2S89S@2759|Eukaryota
DescriptionRibosomal protein L11 methyltransferase (PrmA)
Cds size363
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791704.298394-UTR-P-littoralis_Contig84:369989..3709061680791704.298394-UTR-P-littoralis_Contig84:369989..370906Pylaiella littoralis U1_48UTRP-littoralis_Contig84 369990..370906 +
1680791704.3102858-UTR-P-littoralis_Contig84:371503..3717261680791704.3102858-UTR-P-littoralis_Contig84:371503..371726Pylaiella littoralis U1_48UTRP-littoralis_Contig84 371504..371726 +
1680791704.346253-UTR-P-littoralis_Contig84:372785..3735631680791704.346253-UTR-P-littoralis_Contig84:372785..373563Pylaiella littoralis U1_48UTRP-littoralis_Contig84 372786..373563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791704.3233795-CDS-P-littoralis_Contig84:371726..3718941680791704.3233795-CDS-P-littoralis_Contig84:371726..371894Pylaiella littoralis U1_48CDSP-littoralis_Contig84 371727..371894 +
1680791704.3333502-CDS-P-littoralis_Contig84:372590..3727851680791704.3333502-CDS-P-littoralis_Contig84:372590..372785Pylaiella littoralis U1_48CDSP-littoralis_Contig84 372591..372785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.52.1prot_P-littoralis_Contig84.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 371727..372785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.52.1

>prot_P-littoralis_Contig84.52.1 ID=prot_P-littoralis_Contig84.52.1|Name=mRNA_P-littoralis_Contig84.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MTISRAFDAGVTREPRSGGGGAVRWRCVTTCSSTRAGVLQCFEEAATLPP
SYYHRQVVTAWQNEGSAVDVPWRALGDMYDRRHWGLFSSVPVRKKMEEGG
GRHTELVQQGRRPPRRRAEK*
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mRNA from alignment at P-littoralis_Contig84:369990..373563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.52.1 ID=mRNA_P-littoralis_Contig84.52.1|Name=mRNA_P-littoralis_Contig84.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3574bp|location=Sequence derived from alignment at P-littoralis_Contig84:369990..373563+ (Pylaiella littoralis U1_48)
CTCCACGCTCCCTGACATGGTCTGCTTCAGGCAAACCTGTGCTTTGATAA
CTGTGAGCTGTAAGCGTGTGTACGCCTTGTTCTAGCAGCGACGGATGGGT
GTTGTTTATTTCCACAGGATCGTACAAAAGATTTGGGTTAGGGGCTGACT
ATGTGGTGTACAGGATTAGCCCCTATCACGAACAAAAGAAGGGCTTTGGG
GGTTCGAATCCCAGCTCACCATTCTCCGGGGATTTGCCCCCCTTGCCCTG
TGCTGCTTGTGAGGAATGATGACTGTTGTAAATGAAGAGAGCGTGCGTCA
CTTTATCCAATCAATCTGTTCCAAGTAATCAGAGATACAGGAGAAACACG
AGTGCGTTGGTTCAGACCTCGATAAAGTAGGTACTGTATATAGTGCTTGA
AGTGATGGTTTTGCGCAGGGACATGATAGCAATGGCATCCATCACGCTCT
CCCCGTAGCGCGTAACGACGAAGTTGGAATGGACATGGATGGCGTGTGGG
CAAAGTTAGCCTTGGTTTCGAGCAAACTCGAGTTGAAACACACGTGAGTA
GGCTCCACAAGAGCAGTATTCCGCGAGCAGCAGTACATTGAAAGAGGTGA
GCCGCATCTACGACTTTACCGCTACTGCTGTGAACTCTATTGTACTTCGT
TCTACTAGCCCCAGGTTCTATCTCTACTGCTTTGTCTGCTGCGTGCTCAT
GAACTATTGGTTGATTTGTCGAGGGTTCGGGTCTCATCTGGCGGCAGTGT
AACATCATTCTGGTGGAGACCCTATATTGATGTACGACACGTTTGTTTTT
GGTAGCTCGATTGGGCTTGTAGACACTAACGAGGAGTCGAGCAACACGGA
GTGATTCATCACGGCAGCAGTGTGTTGATGGCTCGCTTAGGCTCGGAGGA
ACTGACCGGAGATTCAGGCGAGATGAATGGATGCATATTTGTCACAGCGT
GGGATGCTCACGTGAGCAATTAGCCACATTTGGAGTAGTTTCAGCGTTTG
AGTGTTTAATCACAGCACGCGTACAACAGGTACCACCGTAGGTGGCTCGA
TTGGGCGAATAGGCGCGTACTTTGTTCCAGCGCACCTGAAATATGTTGCA
ACGTGTGCACCGCCAGTAGAGGAGGAGCAGCAGGAAGGGTGACAGACCCA
ACGGGATGAGCTGCACACAAAAGGAAATCGTGAACGTAAAGGGAAAAGGT
TTAGGTTTCCACACTGCTCGCGCCTTGTTCATACCCGGGAAAATGACCCC
GGCGTCCCATGTTGCGGGTTATGGTGTCACGCTCTAGTAGCGAAGATGCA
TGATACATGTCCCTCGTGTGCGTGCGCCTCCCCCCCCTCCTTCGTAATAC
CTTGTTTGTGTACGGTTTTACCCCTCACAATCCACGGACACCGCGGGTAC
TGCAAATTACCATTTTGGGATTCGTACAGGGGAGACTACAGCACTTTCTC
AAGTTCCCATCCCAACTCTTCGACTGCTACGTACACCGAACTGTGTTTCT
CTCTGTTGCCGCAGGCGTCTTGTTTCGTGCTGATGCTTTTCGTCCCGAGC
GGTGCCGGGGCTTTTCAGTTTGTTCCGCCGCTGTCGCTGTCGCTGCCGCC
GCCGCCGCCGCCGCCGCCAATGGCGGCAACAGCGGGATCTGCACCACCTG
CGTACCGAGGACCCACCGCACAACTCGCGGTTACCACGTCGGGGCGACAT
CAACACCAACGCGAATGTTGCTCTGAACAGCATCGCCATGACCATAAGCA
GAGCTTTCGACGCCGGAGTTACACGCGAGCCACGCAGCGGCGGCGGCGGC
GCTGTTCGTTGGAGATGCGTTACTACTTGCAGTAGTACCCGTGCTGGCGT
CTTGCAATGTTTCGAAGAGGCCGCCACTCTGCCGCCTTCGTACTACCATA
GGCAGGTGGGCTAGGTTTCGTTGCTGCTGTGCTGTGCGGTGTTGTGCTGA
ACTGCTGCGGATTATCATCTCCCCACCTTCATACTGGAAGCACACATATA
TAGAAAGGCACAAGCGGATAGAAACGCGAATCCGCTGTTGGAAGTGCCTC
CAGTAAAAGGGCCCCACTGCTGTTTAGGATGGACGGTTGATCCGTCTTGA
AGGAAGATGACTGTCTGTGGCTGAATACTTCAGAAAAAAAAACGGGAAAG
CAATAAACGGACCTCATCGAATGAGTCATGCAAAATAACGAAGGAAATGA
GAGCGGACGTCATTCACACGTCTTGACCCCAACACTAAACAGAACAGATT
TTCCACAACAATGAAGTCAAGAATAATTGCAGCACGTGCATTAGTCGCGC
CTTTCCTCACGAAACCGACGTCACTGCTGTCGAACAACCAGTAGCTAAAA
AACAACAGACGCCTCACACGTGTTCATTTTTTTTTTGTTCTGCAGCGCAT
ATCTACGTAGTCCCTCTACAGATGCGGTATCAATAGCAGGCGTAAAAACT
CGAGGCAGAGGTGACCGCGTTGGGGCGGAATTATCGATACTACCGGTTAT
TGTGTTCCCCCTTTTCATGTTTCGTTGTGTCTGCTATGATACCCTGTCGT
TATTGCATCGCTCAAGGAAACTCTTGGCGTGTACGTGTGCATGCGACGAA
GGTGGTGACCGCGTGGCAAAACGAAGGCTCGGCCGTCGATGTCCCCTGGC
GGGCCTTGGGAGATATGTATGATCGTCGACATTGGGGCCTGTTCAGCTCG
GTGCCTGTCAGAAAAAAAATGGAAGAGGGGGGGGGACGACACACGGAGCT
GGTGCAGCAGGGGCGGCGGCCTCCGAGGAGGAGGGCCGAGAAGTGATTCT
GACGTTCATCGCGCCCGCGGGGGAGAGCCTTTGGGTGGACGTTGGTGGGG
TGCTGATGGCGGCCTGCGAGCTGGCTGGCGGACAGGATGGTTGCTTCTGT
ACGATGTGACTCAAAACGAGAGAAAGTAAAAGTCGTGGTTCGCTCGGCTT
GGTTGGGTGGTTGATCGATTGATTGGTTGCAGAAAAAGCATGCCTGGCTT
GCTTTGGGAAATGTTGACTGTCCCGTTCTCCCCCAAACGACCAAAATAAG
GCAGCTGTTGTCGTATCGACGTGGCGCGAGTACACGCAGCAGCAAAATTA
CATGATTTTCACATAACATGTGGTACCCCCTAGGTGTGCCTGCTACTACC
GCGCACCAGCAACATAGTTGTTGTTGCACTACCACACATGCCTGTGATAT
ATATTTTTGCTAACGTATCACATGATACATTGTTGTCTCGCAACTTGCCT
TGAACGTGCATGAACATGAACGGCCCCATCCACCCAGCCGCACCTAAAAA
AAAGTTCCTTTGTATGTGACCCGGGCTGATTGATGCGCCAACGTATACCG
CATCGTGTTTTCCGGCGTGCAGGATAGATGAGAGACAACACACACACACA
CATGTTCATCCCACGCTCCGAGACCAGTCTAACCTAAGCTGCTGTAATCT
GAACTAGCTGGGCTACCGTTTTGTACGGTATCACAGTGACCGGCGGGCGG
TGTGGTGGTTGAATTTCTTTTCAACTTTTGAAAAAAAAATGACACAACAC
GACCCGGCATCTGCAAAAAACGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:369990..373563+

>mRNA_P-littoralis_Contig84.52.1 ID=mRNA_P-littoralis_Contig84.52.1|Name=mRNA_P-littoralis_Contig84.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig84:369990..373563+ (Pylaiella littoralis U1_48)
ATGACCATAAGCAGAGCTTTCGACGCCGGAGTTACACGCGAGCCACGCAG
CGGCGGCGGCGGCGCTGTTCGTTGGAGATGCGTTACTACTTGCAGTAGTA
CCCGTGCTGGCGTCTTGCAATGTTTCGAAGAGGCCGCCACTCTGCCGCCT
TCGTACTACCATAGGCAGGTGGTGACCGCGTGGCAAAACGAAGGCTCGGC
CGTCGATGTCCCCTGGCGGGCCTTGGGAGATATGTATGATCGTCGACATT
GGGGCCTGTTCAGCTCGGTGCCTGTCAGAAAAAAAATGGAAGAGGGGGGG
GGACGACACACGGAGCTGGTGCAGCAGGGGCGGCGGCCTCCGAGGAGGAG
GGCCGAGAAGTGA
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