mRNA_P-littoralis_Contig84.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.50.1
Unique NamemRNA_P-littoralis_Contig84.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig84.50.1 vs. uniprot
Match: Q8QN92_ESV1K (EsV-1-197 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN92_ESV1K)

HSP 1 Score: 179 bits (454), Expect = 1.800e-48
Identity = 145/403 (35.98%), Postives = 203/403 (50.37%), Query Frame = 1 
Query:    1 MNVIGGHPNSGLDWYRLLSIYSTLGSSKSNSRVKTSELEKELEALKSLNGDVVKAMQGISTKLDSLIQAGNSKLSGDDLTELKRSVVDGLKDHVAANPRQCADPVACDGESILFTDDVKEVLASLVAQKARVLQEADL---PQMARDIGSIGTKLG--SEATLAEAGRRQMYTWMDTIDEKQESLSEAIKES------TKIVDGESVLFTDDVKQVLAGLVQQKAVAMRHDGIPSIAREIGDIKTQLAGGIPMTEADA-----KELGLRLTEADRKALADAAVAKLVTTGDPSTDXXXXXXXXXXXXXXTTASVL---------------GDKDWLYRLPLRAVRDLFVLKSDDLYLASDNIIEEACSYSQAVRALRETSTLYNTDDVVTVDEVNAAIADRYR 1116
            M+V G  P  G++WYRLLSIYS LG  KSNS  K  ++  EL+   S   DV  A+Q I+TKLD LI A   +LSGDDLT LK  +V GLKDHV ++ ++CA PV C+GES+ FTDDVKE+L+ LV QK+  L         Q  + +G I   LG  S  T ++A + Q+    DTI   Q  L+   KE+      +K+ + ES  FTDDV +VLA LV+QKA A++ DG      E   I T L   I  T + A     K      T+++ + L  + + K+ +   P                      L                DK  LY++    +R +FV K+DDL L S    +EA  YS+ +    +    YN D V+T  ++ + +  RY+
Sbjct:    1 MDVHGTRP-LGVNWYRLLSIYSDLGK-KSNSHEKICDIGTELQ---SFRADVGTAIQSINTKLDDLINANKIELSGDDLTRLKDDIVSGLKDHVQSSGQECAAPVVCNGESVFFTDDVKELLSDLVRQKSGSLSPGGNGRDEQNYKALGRIEECLGDLSNKTDSDAIKTQLQALQDTIS-NQAGLTAQDKETIAREIASKVCEDESFRFTDDVNEVLASLVEQKAEALKPDG------ETKRIATALIAYIEKTLSGAITGAGKRFDSVATKSELEGLRKSIIQKMHSMSSPVDAPDSATITLDDASVQRIVDTLLTQNREEDANIEPWEPDKPDLYKIDTENIRQMFVEKNDDLMLQSAEYEDEALRYSRYIVVAGDE---YNKDSVITKKQIVSDLNQRYK 388
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BLAST of mRNA_P-littoralis_Contig84.50.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.460e-7
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  331 SILFTDDVKEVLASLVAQKARVLQEADLPQMARDIGSIGTKLGSEATLAEAGRRQMYTWMDTIDEKQESL 540
            S+LFT DVK +LASLV QKA VL+E +L +MA+ I SI TKLG +A   +  R     WM  + EKQ+++
Sbjct:  268 SVLFTPDVKAILASLVEQKAAVLREVNLQKMAQGIVSIDTKLGVDAAKIDDERDLDADWMKGLVEKQDAI 337
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN92_ESV1K1.800e-4835.98EsV-1-197 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5KC66_9PHAE3.460e-750.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:358355..359587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1116
Hectar predicted targeting categoryother localisation
Exons2
Cds size1116
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791704.251684-CDS-P-littoralis_Contig84:358354..3591121680791704.251684-CDS-P-littoralis_Contig84:358354..359112Pylaiella littoralis U1_48CDSP-littoralis_Contig84 358355..359112 +
1680791704.2662818-CDS-P-littoralis_Contig84:359229..3595871680791704.2662818-CDS-P-littoralis_Contig84:359229..359587Pylaiella littoralis U1_48CDSP-littoralis_Contig84 359230..359587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.50.1prot_P-littoralis_Contig84.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 358355..359587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.50.1

>prot_P-littoralis_Contig84.50.1 ID=prot_P-littoralis_Contig84.50.1|Name=mRNA_P-littoralis_Contig84.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MNVIGGHPNSGLDWYRLLSIYSTLGSSKSNSRVKTSELEKELEALKSLNG
DVVKAMQGISTKLDSLIQAGNSKLSGDDLTELKRSVVDGLKDHVAANPRQ
CADPVACDGESILFTDDVKEVLASLVAQKARVLQEADLPQMARDIGSIGT
KLGSEATLAEAGRRQMYTWMDTIDEKQESLSEAIKESTKIVDGESVLFTD
DVKQVLAGLVQQKAVAMRHDGIPSIAREIGDIKTQLAGGIPMTEADAKEL
GLRLTEADRKALADAAVAKLVTTGDPSTDAFKAALANAAVARMTTASVLG
DKDWLYRLPLRAVRDLFVLKSDDLYLASDNIIEEACSYSQAVRALRETST
LYNTDDVVTVDEVNAAIADRYR
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mRNA from alignment at P-littoralis_Contig84:358355..359587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.50.1 ID=mRNA_P-littoralis_Contig84.50.1|Name=mRNA_P-littoralis_Contig84.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1233bp|location=Sequence derived from alignment at P-littoralis_Contig84:358355..359587+ (Pylaiella littoralis U1_48)
ATGAATGTCATCGGTGGTCACCCTAACTCTGGGCTGGACTGGTACAGATT
GCTGTCCATCTACTCGACCCTGGGCAGCAGCAAGTCGAATTCTCGTGTAA
AAACGAGCGAACTCGAAAAGGAGTTGGAAGCGTTAAAATCGCTCAACGGG
GATGTCGTCAAAGCCATGCAAGGCATCAGCACAAAGCTTGACTCGTTGAT
CCAAGCGGGTAATTCGAAGCTATCCGGAGACGACCTGACCGAGCTGAAGA
GATCGGTCGTCGATGGTCTGAAGGATCACGTTGCAGCGAATCCCAGGCAG
TGCGCCGATCCCGTGGCTTGCGACGGCGAATCCATTTTGTTCACCGACGA
CGTGAAGGAAGTCTTGGCCAGCCTTGTTGCACAAAAGGCGAGAGTTTTGC
AGGAAGCTGACCTGCCGCAGATGGCTCGGGACATTGGCTCCATTGGCACC
AAACTTGGGTCGGAGGCAACTTTGGCGGAAGCCGGCCGACGCCAAATGTA
TACTTGGATGGACACCATCGATGAAAAACAAGAGTCTCTCTCGGAGGCAA
TCAAAGAGAGCACGAAGATTGTGGACGGCGAGTCCGTCCTGTTCACCGAT
GACGTGAAGCAAGTGTTGGCCGGACTTGTTCAACAGAAGGCTGTCGCTAT
GCGGCACGATGGCATACCAAGTATCGCTCGTGAGATTGGCGACATCAAGA
CTCAGCTTGCGGGCGGCATCCCCATGACGGAGGCTGATGCCAAAGAGCTT
GGCTTGCGGTTGGACGCAATCTCCGACACTGGACGCAATCTCACCGCGGC
AGTCGCCGACGGCTTCATTGGTGCCGAAGCTTTCACCGCCGCCCTTCAAG
AATTTTTCGGTGACGGTCGGGGAAGCTTGACCGAGGCTGACAGAAAGGCC
CTTGCCGACGCAGCTGTAGCCAAGCTTGTGACCACCGGTGACCCTAGCAC
CGATGCTTTCAAAGCGGCTCTTGCGAACGCAGCTGTTGCCAGGATGACCA
CTGCTTCTGTGTTGGGCGACAAGGACTGGTTGTACCGACTGCCACTGCGG
GCGGTCAGGGATTTGTTTGTCCTCAAATCCGACGATTTGTATTTAGCTTC
AGACAATATCATCGAGGAAGCATGCTCTTATTCTCAAGCAGTACGTGCGC
TTCGTGAAACAAGCACACTATACAACACAGACGATGTAGTCACTGTCGAT
GAAGTGAACGCTGCTATAGCCGACAGGTACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:358355..359587+

>mRNA_P-littoralis_Contig84.50.1 ID=mRNA_P-littoralis_Contig84.50.1|Name=mRNA_P-littoralis_Contig84.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig84:358355..359587+ (Pylaiella littoralis U1_48)
ATGAATGTCATCGGTGGTCACCCTAACTCTGGGCTGGACTGGTACAGATT
GCTGTCCATCTACTCGACCCTGGGCAGCAGCAAGTCGAATTCTCGTGTAA
AAACGAGCGAACTCGAAAAGGAGTTGGAAGCGTTAAAATCGCTCAACGGG
GATGTCGTCAAAGCCATGCAAGGCATCAGCACAAAGCTTGACTCGTTGAT
CCAAGCGGGTAATTCGAAGCTATCCGGAGACGACCTGACCGAGCTGAAGA
GATCGGTCGTCGATGGTCTGAAGGATCACGTTGCAGCGAATCCCAGGCAG
TGCGCCGATCCCGTGGCTTGCGACGGCGAATCCATTTTGTTCACCGACGA
CGTGAAGGAAGTCTTGGCCAGCCTTGTTGCACAAAAGGCGAGAGTTTTGC
AGGAAGCTGACCTGCCGCAGATGGCTCGGGACATTGGCTCCATTGGCACC
AAACTTGGGTCGGAGGCAACTTTGGCGGAAGCCGGCCGACGCCAAATGTA
TACTTGGATGGACACCATCGATGAAAAACAAGAGTCTCTCTCGGAGGCAA
TCAAAGAGAGCACGAAGATTGTGGACGGCGAGTCCGTCCTGTTCACCGAT
GACGTGAAGCAAGTGTTGGCCGGACTTGTTCAACAGAAGGCTGTCGCTAT
GCGGCACGATGGCATACCAAGTATCGCTCGTGAGATTGGCGACATCAAGA
CTCAGCTTGCGGGCGGCATCCCCATGACGGAGGCTGATGCCAAAGAGCTT
GGCTTGCGCTTGACCGAGGCTGACAGAAAGGCCCTTGCCGACGCAGCTGT
AGCCAAGCTTGTGACCACCGGTGACCCTAGCACCGATGCTTTCAAAGCGG
CTCTTGCGAACGCAGCTGTTGCCAGGATGACCACTGCTTCTGTGTTGGGC
GACAAGGACTGGTTGTACCGACTGCCACTGCGGGCGGTCAGGGATTTGTT
TGTCCTCAAATCCGACGATTTGTATTTAGCTTCAGACAATATCATCGAGG
AAGCATGCTCTTATTCTCAAGCAGTACGTGCGCTTCGTGAAACAAGCACA
CTATACAACACAGACGATGTAGTCACTGTCGATGAAGTGAACGCTGCTAT
AGCCGACAGGTACCGC
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