mRNA_P-littoralis_Contig84.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.46.1
Unique NamemRNA_P-littoralis_Contig84.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 6.150e-52
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVTFE 282
            E+DVRDALAR TRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHK+RLHLFAHEGEKALKYF+MAT LC KD IRVTFE
Sbjct:  664 ERDVRDALARQTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKQRLHLFAHEGEKALKYFEMATRLCAKDGIRVTFE 757          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-18
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYF 231
            VRDALA    G+ E  TPAG+IDV +  EVIE+K++K WK G+GQV AY   HPS  KRLHLFAH GE    KYF
Sbjct:   55 VRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYF 129          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.460e-18
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYFKMATELCVKDRIRVTFE 282
            E   R+ALA    G+ E  TP+G ID    D VIE+K+   WK G+GQV AY  H+P   +RLHLFAH G+K   KYF+MA  +C    ++VTFE
Sbjct:   48 ESSAREALASLIGGEREVETPSGFIDK-PSDAVIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFE 141          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 84.7 bits (208), Expect = 2.610e-17
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFA--------HEGEKALKYFKMATELCVKDRIRVTFE 282
            +RD LA    G+TE  TP G IDV T  EVIE+KH++ +  G GQV  YGE+HP  KKRLHLFA         + E   +  +MA ++CV   I VTFE
Sbjct:  293 IRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFALIEDVRSDRKIEDLDRKIEMAEKMCVTSNIEVTFE 391          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYFKMATELCVK 258
            VRDALA    G TE  TP+G IDV +  EVIE+K+++ WK G+GQV AY  H+P   +RLHLFAH G++   KY ++A  +  K
Sbjct:  287 VRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCELAKAIAFK 370          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.800e-15
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAH 204
            VRDALA    G TE  TP+G IDV +  EVIE+K+++NWK G+GQV  Y  H+P   +RLHLFAH
Sbjct:  721 VRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 1.230e-14
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   40 GQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVTFE 282
            G+TE  TPAGSID+ T  ++IE+KH KNWK+ +GQV  Y  ++PSH+KR+HLF    E  L   K   + C +  I +T+E
Sbjct:  168 GETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQVLVYSAYYPSHEKRIHLFGTCHESFLDTVK---QHCQRQNIVLTWE 245          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: A0A2P0VMM5_9PHYC (Uncharacterized protein n=1 Tax=Tetraselmis virus 1 TaxID=2060617 RepID=A0A2P0VMM5_9PHYC)

HSP 1 Score: 65.5 bits (158), Expect = 2.060e-11
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 EKDVRDALARHTRG-QTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVT 276
            E  VRD LA+   G + E    +G ID+ T  E+IE+K    WK+ +GQ+ AYGE  P HKKR+HLF  + +    ++++A   C +  + +T
Sbjct:   29 ESTVRDRLAKQLVGSRIEVPCSSGLIDIVTPTEIIEVKRAPLWKAAMGQILAYGEDFPKHKKRVHLFGKDDQ----HYRLAAVTCERFGVALT 117          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: L7RE44_9VIRU (KilA N-domain protein n=1 Tax=Acanthamoeba polyphaga moumouvirus TaxID=1269028 RepID=L7RE44_9VIRU)

HSP 1 Score: 60.8 bits (146), Expect = 4.920e-9
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLF 198
            EK ++  L +   G TE  T  G ID+ T++ ++EIK + NWK+ +GQ+ AY + +P   KR++LF
Sbjct:  150 EKQLKLKLQKKLGGTTEVPTSCGKIDLLTKNYIVEIKTYNNWKAALGQILAYSDQYPDKNKRIYLF 215          
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Match: A0A2P1EKB3_9VIRU (KilA-N domain-containing protein n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2P1EKB3_9VIRU)

HSP 1 Score: 59.3 bits (142), Expect = 2.260e-8
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLF 198
            EK +++ L ++  G  E  T  G+ID+ T++ +IEIK++ NWK G+GQ+ +Y   HP   K L+LF
Sbjct:  179 EKIIQEELQKNLGGLIEVKTKVGAIDLLTKNTIIEIKNYDNWKHGLGQLLSYSIFHPDKTKCLYLF 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G3S0_ECTSI6.150e-5292.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G319_ECTSI1.100e-1860.00FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LFH9_ECTSI2.460e-1848.42FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
B5LW94_9PHYC2.610e-1747.47Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JJP2_9PHAE1.900e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5N7_9PHAE7.800e-1556.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K9VSH3_9CYAN1.230e-1446.91Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
A0A2P0VMM5_9PHYC2.060e-1137.63Uncharacterized protein n=1 Tax=Tetraselmis virus ... [more]
L7RE44_9VIRU4.920e-939.39KilA N-domain protein n=1 Tax=Acanthamoeba polypha... [more]
A0A2P1EKB3_9VIRU2.260e-840.91KilA-N domain-containing protein n=3 Tax=Mimivirus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:346198..346479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog449447.MAE_20210
Model size282
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-15
EggNOG OGs2EUDG@1|root,338X1@2|Bacteria
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791704.1484873-CDS-P-littoralis_Contig84:346197..3464791680791704.1484873-CDS-P-littoralis_Contig84:346197..346479Pylaiella littoralis U1_48CDSP-littoralis_Contig84 346198..346479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.46.1prot_P-littoralis_Contig84.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 346198..346479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.46.1

>prot_P-littoralis_Contig84.46.1 ID=prot_P-littoralis_Contig84.46.1|Name=mRNA_P-littoralis_Contig84.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVK
AYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVTFE
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mRNA from alignment at P-littoralis_Contig84:346198..346479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.46.1 ID=mRNA_P-littoralis_Contig84.46.1|Name=mRNA_P-littoralis_Contig84.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig84:346198..346479+ (Pylaiella littoralis U1_48)
GAGAAGGATGTCAGGGATGCGCTCGCTCGCCACACCCGAGGTCAAACCGA GTGGGGGACCCCGGCAGGCTCCATCGACGTTTTCACGAGAGACGAAGTAA TCGAGATCAAGCACTTCAAAAATTGGAAGAGTGGAGTCGGTCAGGTTAAG GCCTACGGGGAACACCATCCCTCGCACAAGAAACGCCTACATCTTTTTGC GCACGAGGGAGAGAAGGCTCTTAAGTACTTCAAAATGGCCACGGAATTGT GTGTGAAGGATAGAATTCGCGTTACATTTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:346198..346479+

>mRNA_P-littoralis_Contig84.46.1 ID=mRNA_P-littoralis_Contig84.46.1|Name=mRNA_P-littoralis_Contig84.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig84:346198..346479+ (Pylaiella littoralis U1_48)
GAGAAGGATGTCAGGGATGCGCTCGCTCGCCACACCCGAGGTCAAACCGA
GTGGGGGACCCCGGCAGGCTCCATCGACGTTTTCACGAGAGACGAAGTAA
TCGAGATCAAGCACTTCAAAAATTGGAAGAGTGGAGTCGGTCAGGTTAAG
GCCTACGGGGAACACCATCCCTCGCACAAGAAACGCCTACATCTTTTTGC
GCACGAGGGAGAGAAGGCTCTTAAGTACTTCAAAATGGCCACGGAATTGT
GTGTGAAGGATAGAATTCGCGTTACATTTGAA
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