mRNA_P-littoralis_Contig84.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.45.1
Unique NamemRNA_P-littoralis_Contig84.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:341383..342351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHJ0
Model size831
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.19e-09
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size831
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791704.0978565-CDS-P-littoralis_Contig84:341382..3414211680791704.0978565-CDS-P-littoralis_Contig84:341382..341421Pylaiella littoralis U1_48CDSP-littoralis_Contig84 341383..341421 +
1680791704.1162875-CDS-P-littoralis_Contig84:341559..3423511680791704.1162875-CDS-P-littoralis_Contig84:341559..342351Pylaiella littoralis U1_48CDSP-littoralis_Contig84 341560..342351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.45.1prot_P-littoralis_Contig84.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 341383..342351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.45.1

>prot_P-littoralis_Contig84.45.1 ID=prot_P-littoralis_Contig84.45.1|Name=mRNA_P-littoralis_Contig84.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
DTDGDGDDGGDGCWSVGGNGRDNDGGSSSGSGGDDTDSDSDDSDSGGRDS
GGRGRGGGGRGRGGGGGRRGGGGRGRGGGGRAPRRLNAPVRVTGPDLMEI
FTTPSSDPRYEASDKAHIAAYRKEADRKLKKREGTAPSAKCTKYGIGSMP
KIEMVLRGLTEDSKGLPLKNGVFFDREQLKDLKEDFNIAYTLDPEHIGVS
LRKTKVLKGGRSLVVNSFDHGVYTMEDGKTKMKQWELLKCKCGGSVTFDD
ALRRYILHLGATQTIMKIHGAPFVRGD
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mRNA from alignment at P-littoralis_Contig84:341383..342351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.45.1 ID=mRNA_P-littoralis_Contig84.45.1|Name=mRNA_P-littoralis_Contig84.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=969bp|location=Sequence derived from alignment at P-littoralis_Contig84:341383..342351+ (Pylaiella littoralis U1_48)
GACACCGACGGGGACGGTGACGACGGGGGCGACGGGTGTGTCACTCCTAT
GGACGTGGTTGGAGACGATGGCGGTGAAGACGGGGGCGAAGGGGGTGTCG
CTCCCGTTGATATGGGGGACGATGACGTCAGCGTTGCTAGCTTCGGCGGC
GGCGGTGGGGACGACAGCGACAACGAGTGGAGTGTTGGTGGTAACGGCAG
AGACAATGATGGGGGTAGCAGCAGCGGGAGCGGTGGGGACGACACCGACA
GCGACAGCGATGACAGCGACAGCGGTGGTCGCGACAGCGGTGGTCGCGGG
CGGGGAGGCGGTGGTCGCGGTAGGGGAGGCGGTGGTGGCAGGCGGGGAGG
CGGTGGTCGCGGGAGGGGAGGCGGTGGAAGGGCCCCCCGCCGGCTAAACG
CTCCCGTGCGGGTAACGGGACCGGATCTCATGGAGATTTTTACTACCCCG
AGCAGCGACCCGAGGTACGAGGCAAGTGACAAAGCGCACATCGCCGCCTA
CCGGAAGGAGGCTGATAGAAAATTGAAGAAACGCGAGGGCACAGCTCCAA
GTGCGAAATGCACGAAGTATGGGATAGGGTCGATGCCGAAGATTGAAATG
GTGCTCAGGGGGCTAACGGAGGACTCCAAGGGGCTCCCCCTCAAAAACGG
GGTGTTCTTCGACCGGGAGCAGCTCAAAGACTTAAAGGAGGACTTCAACA
TCGCCTACACGCTGGACCCGGAACACATAGGGGTTTCTCTGCGCAAGACA
AAGGTCTTGAAAGGCGGACGCAGCTTAGTTGTGAATTCGTTCGACCACGG
TGTGTACACGATGGAGGATGGTAAAACCAAGATGAAGCAGTGGGAGCTGC
TTAAGTGCAAGTGTGGCGGAAGCGTGACGTTCGACGACGCCCTCCGACGG
TATATTTTGCACCTAGGGGCGACACAAACCATCATGAAAATCCACGGTGC
GCCTTTCGTACGGGGTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:341383..342351+

>mRNA_P-littoralis_Contig84.45.1 ID=mRNA_P-littoralis_Contig84.45.1|Name=mRNA_P-littoralis_Contig84.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig84:341383..342351+ (Pylaiella littoralis U1_48)
GACACCGACGGGGACGGTGACGACGGGGGCGACGGGTGTTGGAGTGTTGG
TGGTAACGGCAGAGACAATGATGGGGGTAGCAGCAGCGGGAGCGGTGGGG
ACGACACCGACAGCGACAGCGATGACAGCGACAGCGGTGGTCGCGACAGC
GGTGGTCGCGGGCGGGGAGGCGGTGGTCGCGGTAGGGGAGGCGGTGGTGG
CAGGCGGGGAGGCGGTGGTCGCGGGAGGGGAGGCGGTGGAAGGGCCCCCC
GCCGGCTAAACGCTCCCGTGCGGGTAACGGGACCGGATCTCATGGAGATT
TTTACTACCCCGAGCAGCGACCCGAGGTACGAGGCAAGTGACAAAGCGCA
CATCGCCGCCTACCGGAAGGAGGCTGATAGAAAATTGAAGAAACGCGAGG
GCACAGCTCCAAGTGCGAAATGCACGAAGTATGGGATAGGGTCGATGCCG
AAGATTGAAATGGTGCTCAGGGGGCTAACGGAGGACTCCAAGGGGCTCCC
CCTCAAAAACGGGGTGTTCTTCGACCGGGAGCAGCTCAAAGACTTAAAGG
AGGACTTCAACATCGCCTACACGCTGGACCCGGAACACATAGGGGTTTCT
CTGCGCAAGACAAAGGTCTTGAAAGGCGGACGCAGCTTAGTTGTGAATTC
GTTCGACCACGGTGTGTACACGATGGAGGATGGTAAAACCAAGATGAAGC
AGTGGGAGCTGCTTAAGTGCAAGTGTGGCGGAAGCGTGACGTTCGACGAC
GCCCTCCGACGGTATATTTTGCACCTAGGGGCGACACAAACCATCATGAA
AATCCACGGTGCGCCTTTCGTACGGGGTGAC
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