prot_P-littoralis_Contig84.41.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig84.41.1
Unique Nameprot_P-littoralis_Contig84.41.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length142
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.300e-27
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 0 
Query:   20 AIRCLCASL-------SGFP-AATGGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 142
            A+R +C++L       + FP    G   F+GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F
Sbjct:   65 ALRFVCSALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKF 194
[Close]
BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.050e-22
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 0 
Query:   36 GGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 142
            G   ++GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F
Sbjct:   12 GSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHF 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE5.300e-2751.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE2.050e-2245.79Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:286559..286984 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.41.1mRNA_P-littoralis_Contig84.41.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig84 286558..286984 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig84.41.1 ID=prot_P-littoralis_Contig84.41.1|Name=mRNA_P-littoralis_Contig84.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
LFRRRGLRWRDLGRNVRASAIRCLCASLSGFPAATGGLFFLGDTGAVIHA
VSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTL
RNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF
back to top