mRNA_P-littoralis_Contig84.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.41.1
Unique NamemRNA_P-littoralis_Contig84.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.300e-27
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:   58 AIRCLCASL-------SGFP-AATGGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 426
            A+R +C++L       + FP    G   F+GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F
Sbjct:   65 ALRFVCSALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKF 194
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BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.050e-22
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:  106 GGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 426
            G   ++GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F
Sbjct:   12 GSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHF 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE5.300e-2751.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE2.050e-2245.79Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:286558..286984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size428
Hectar predicted targeting categorysignal anchor
Exons1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791703.795064-CDS-P-littoralis_Contig84:286558..2869841680791703.795064-CDS-P-littoralis_Contig84:286558..286984Pylaiella littoralis U1_48CDSP-littoralis_Contig84 286559..286984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.41.1prot_P-littoralis_Contig84.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 286559..286984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.41.1

>prot_P-littoralis_Contig84.41.1 ID=prot_P-littoralis_Contig84.41.1|Name=mRNA_P-littoralis_Contig84.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
LFRRRGLRWRDLGRNVRASAIRCLCASLSGFPAATGGLFFLGDTGAVIHA
VSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTL
RNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF
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mRNA from alignment at P-littoralis_Contig84:286558..286984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.41.1 ID=mRNA_P-littoralis_Contig84.41.1|Name=mRNA_P-littoralis_Contig84.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=427bp|location=Sequence derived from alignment at P-littoralis_Contig84:286558..286984- (Pylaiella littoralis U1_48)
CTCTTCCGCAGACGGGGACTCCGGTGGCGTGATTTGGGGCGGAATGTTCG
CGCTTCAGCTATACGCTGCCTATGCGCCTCCCTCTCAGGTTTTCCAGCCG
CGACCGGGGGCCTCTTTTTTCTGGGAGACACGGGCGCGGTAATTCATGCC
GTTTCCAACGATGAACACGTCTATAATCGGCGTGCGCCGCGCCGCGGAGA
GACGCTTCTCATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTG
GGGATTTGGACCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTG
CGCAACGTAGCGGTCGTCCCGAAATTGGTGTTGGATGTCATCTCGTTCAG
CGTCATCCAGAAGGCAAAGATACCAATACTGCTGGATGAGAGGGGGGCGA
CGCTGCTCGACGGCAAGGTCACCTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:286558..286984-

>mRNA_P-littoralis_Contig84.41.1 ID=mRNA_P-littoralis_Contig84.41.1|Name=mRNA_P-littoralis_Contig84.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig84:286558..286984- (Pylaiella littoralis U1_48)
CTCTTCCGCAGACGGGGACTCCGGTGGCGTGATTTGGGGCGGAATGTTCG
CGCTTCAGCTATACGCTGCCTATGCGCCTCCCTCTCAGGTTTTCCAGCCG
CGACCGGGGGCCTCTTTTTTCTGGGAGACACGGGCGCGGTAATTCATGCC
GTTTCCAACGATGAACACGTCTATAATCGGCGTGCGCCGCGCCGCGGAGA
GACGCTTCTCATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTG
GGGATTTGGACCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTG
CGCAACGTAGCGGTCGTCCCGAAATTGGTGTTGGATGTCATCTCGTTCAG
CGTCATCCAGAAGGCAAAGATACCAATACTGCTGGATGAGAGGGGGGCGA
CGCTGCTCGACGGCAAGGTCACCTTC
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