mRNA_P-littoralis_Contig84.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.2.1
Unique NamemRNA_P-littoralis_Contig84.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 1.050e-132
Identity = 191/222 (86.04%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  355 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 5.580e-130
Identity = 191/222 (86.04%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  579 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 8.510e-129
Identity = 188/222 (84.68%), Postives = 203/222 (91.44%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+  GITFQRG  GG+HMEL VDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GM EAIFLRYLW  IF  LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  342 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 8.520e-124
Identity = 188/222 (84.68%), Postives = 204/222 (91.89%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKS TLSSTEAEYVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  883 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 2.670e-123
Identity = 191/222 (86.04%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 1655 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 2.240e-121
Identity = 169/221 (76.47%), Postives = 199/221 (90.05%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNI 663
            FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T+ +GITFQRG  GG  +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+GMKEAIFLRYLW+FIFPD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+ F  HR+FVMN+
Sbjct:  125 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHIVMYIRCTSAYGITFQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 4.560e-121
Identity = 182/221 (82.35%), Postives = 201/221 (90.95%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNI 663
            FR LVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLM+VR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLR+LW F+FP  DVGCT V EDNVGA +LAS  A+TPNSKHIDI+HHFIRERVARGEF+VVH RS LQRADFLTK LPK+ FCAHRDFVMNI
Sbjct:  771 FRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFVMNI 991          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.640e-119
Identity = 171/204 (83.82%), Postives = 186/204 (91.18%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTK 612
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMEL VDSDFA+KATDRRSVSGA+VM AGAC+MYL R QKSVTLSSTEAEY+A+ +GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHV S LQRADFLTK
Sbjct:   21 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMIAGACVMYLCRMQKSVTLSSTEAEYMAMFDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVPSDLQRADFLTK 224          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 2.700e-110
Identity = 167/221 (75.57%), Postives = 196/221 (88.69%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDVFCAHRDFVMNI 663
            FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T  +GIT QRG  GG  +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+GMKEAIFLRYLW+FI PD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+ F  HR+FVMN+
Sbjct:  893 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113          
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 3.540e-105
Identity = 158/198 (79.80%), Postives = 170/198 (85.86%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAE-------------YVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T   GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAE             YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFI ERVARG
Sbjct:  100 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEXXXXXXXXXXXXEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARG 297          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWG1_9PHAE1.050e-13286.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE5.580e-13086.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5L3_9PHAE8.510e-12984.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP2_9PHAE8.520e-12484.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE2.670e-12386.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L5Q2_9PHAE2.240e-12176.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAQ1_9PHAE4.560e-12182.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPR3_9PHAE1.640e-11983.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCD8_9PHAE2.700e-11075.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHE6_9PHAE3.540e-10579.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:34355..35115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size761
Max annot lvl4751|Fungi
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.17e-43
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size684
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.254201-UTR-P-littoralis_Contig84:34354..343751680791702.254201-UTR-P-littoralis_Contig84:34354..34375Pylaiella littoralis U1_48UTRP-littoralis_Contig84 34355..34375 +
1680791702.2788918-UTR-P-littoralis_Contig84:35059..351151680791702.2788918-UTR-P-littoralis_Contig84:35059..35115Pylaiella littoralis U1_48UTRP-littoralis_Contig84 35060..35115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.2678494-CDS-P-littoralis_Contig84:34375..350591680791702.2678494-CDS-P-littoralis_Contig84:34375..35059Pylaiella littoralis U1_48CDSP-littoralis_Contig84 34376..35059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.2.1prot_P-littoralis_Contig84.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 34376..35059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.2.1

>prot_P-littoralis_Contig84.2.1 ID=prot_P-littoralis_Contig84.2.1|Name=mRNA_P-littoralis_Contig84.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGIT
FQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKS
VTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVY
LASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALP
KDVFCAHRDFVMNIRWFVRVALFALSF*
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mRNA from alignment at P-littoralis_Contig84:34355..35115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.2.1 ID=mRNA_P-littoralis_Contig84.2.1|Name=mRNA_P-littoralis_Contig84.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig84:34355..35115+ (Pylaiella littoralis U1_48)
TTTCGGTCGTTGGTGGGGCACATGATGTGGCTGGCGAATCAGACTCGTCC GGATATTCTCAACGCGGTGCGGGCCGTGGCGAGGTATTCTCACGCGCCGA AGCTGGTGCATTGGCGGGCGGCGTTGCATGTCTTGATGTATGTTCGGGGA ACCACTGATTTCGGCATCACTTTTCAGAGAGGTGTACCAGGAGGAGAGCA CATGGAGCTTTTTGTCGATTCGGATTTCGCCAGCAAGGCAACCGACCGGC GGTCTGTTTCTGGTGCGGTGGTGATGTTTGCTGGTGCATGTTTGATGTAT TTGTCTAGGACGCAAAAGAGCGTCACACTCTCGTCGACGGAGGCGGAGTA CGTAGCCCTAGCTGAAGGGATGAAGGAGGCGATTTTCTTGCGGTATCTCT GGAATTTTATCTTTCCGGACCTCGATGTAGGGTGCACTTTGGTCCACGAG GACAACGTCGGGGCCGTTTACCTGGCAAGCAATCCGGCCACAACCCCCAA CTCAAAGCACATCGACATCAAGCACCATTTCATTCGCGAACGCGTGGCAC GGGGGGAGTTCAGGGTAGTTCACGTACGTTCTGCGTTGCAGCGTGCTGAT TTCTTGACCAAAGCACTGCCCAAAGACGTTTTTTGCGCGCACCGTGACTT TGTGATGAACATTCGGTGGTTTGTGCGTGTTGCGTTGTTCGCCCTGAGTT TCTAGCCGTTCTGCGGCTATCGTCTCGGTTTTTGGCACCGCAGCATGTAT GTTGTTTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:34355..35115+

>mRNA_P-littoralis_Contig84.2.1 ID=mRNA_P-littoralis_Contig84.2.1|Name=mRNA_P-littoralis_Contig84.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig84:34355..35115+ (Pylaiella littoralis U1_48)
ATGATGTGGCTGGCGAATCAGACTCGTCCGGATATTCTCAACGCGGTGCG
GGCCGTGGCGAGGTATTCTCACGCGCCGAAGCTGGTGCATTGGCGGGCGG
CGTTGCATGTCTTGATGTATGTTCGGGGAACCACTGATTTCGGCATCACT
TTTCAGAGAGGTGTACCAGGAGGAGAGCACATGGAGCTTTTTGTCGATTC
GGATTTCGCCAGCAAGGCAACCGACCGGCGGTCTGTTTCTGGTGCGGTGG
TGATGTTTGCTGGTGCATGTTTGATGTATTTGTCTAGGACGCAAAAGAGC
GTCACACTCTCGTCGACGGAGGCGGAGTACGTAGCCCTAGCTGAAGGGAT
GAAGGAGGCGATTTTCTTGCGGTATCTCTGGAATTTTATCTTTCCGGACC
TCGATGTAGGGTGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTTAC
CTGGCAAGCAATCCGGCCACAACCCCCAACTCAAAGCACATCGACATCAA
GCACCATTTCATTCGCGAACGCGTGGCACGGGGGGAGTTCAGGGTAGTTC
ACGTACGTTCTGCGTTGCAGCGTGCTGATTTCTTGACCAAAGCACTGCCC
AAAGACGTTTTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTGGTT
TGTGCGTGTTGCGTTGTTCGCCCTGAGTTTCTAG
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