mRNA_P-littoralis_Contig84.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.6.1
Unique NamemRNA_P-littoralis_Contig84.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:59094..63289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2071
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_000940.1
Cds size1689
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.0973368-CDS-P-littoralis_Contig84:59093..607821680791702.0973368-CDS-P-littoralis_Contig84:59093..60782Pylaiella littoralis U1_48CDSP-littoralis_Contig84 59094..60782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.112561-UTR-P-littoralis_Contig84:60782..608001680791702.112561-UTR-P-littoralis_Contig84:60782..60800Pylaiella littoralis U1_48UTRP-littoralis_Contig84 60783..60800 -
1680791702.1254005-UTR-P-littoralis_Contig84:62926..632891680791702.1254005-UTR-P-littoralis_Contig84:62926..63289Pylaiella littoralis U1_48UTRP-littoralis_Contig84 62927..63289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.6.1prot_P-littoralis_Contig84.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 59094..60782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.6.1

>prot_P-littoralis_Contig84.6.1 ID=prot_P-littoralis_Contig84.6.1|Name=mRNA_P-littoralis_Contig84.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=563bp
MERSFGADALLNESWATPWLDEGVFPYWSQAVSFGDLEDFFRWLVVQDSR
RAALVLNHAREFEKVHHLVTTELSRPKRQEEQQQQRQQPYRQGGQTPRPW
ASSTSVGMEMRGGTARGPPAQALASSGGGEERRRGPGGGRNKTSSPPFRN
SKITNVALDASSSSHQSSDARRSKRLFASGGSGSGGGRGGRGVGGGERDR
VGGGRAATSVMPPSGSYSWPLPPNLFSAPVSRQHDERNSRHKTRSSIPSS
EALGFSSRRRGTPAPRSRVAAQMASSTSSAAAVVGYYRRPDAPAASDNPR
RTTRQWSNLRVGAGGAVTGNLGVGGSSRSSSSGGGNGNDNGNSSRRGSSS
GSMGASGSRSGGGSSSSGRSGTKMTSREAHGPGAAAGGRPGFSSWAAMAA
AVVATEAAGKTATVRQAVEAAAAEAEAAENHVGTGQGKRGRGILSPEKQF
SGRAGGLARRSSRRSSTPTAWDKSNGNGLKGGGVTRIRRNLRKDMPVNLG
LSTPASDLDVGERSSPLRVAGPTPAGSVNGHREVGERVSPSEHRQQVQFL
RSPRSLLRDIDET
back to top

mRNA from alignment at P-littoralis_Contig84:59094..63289-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.6.1 ID=mRNA_P-littoralis_Contig84.6.1|Name=mRNA_P-littoralis_Contig84.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4196bp|location=Sequence derived from alignment at P-littoralis_Contig84:59094..63289- (Pylaiella littoralis U1_48)
GGGGCCCTCGGTGGGTGACATACGCAAACATGAGGGAGATCGAAGGGACA
AAAGAGACAGATTTGACCGTCTGACTGCCCGCGGGGCACGAAAAGTTTGT
TCTGTGGGAATCACACACCATCTGGTGTGCGTCCTTTGTCCACCGATTTG
GCTCTGGCGATACCCGCCGTTTCCGGTGTCCCCTCTCCGGAAAACTCTGA
AAGGCCGTAGTTACCCGACCGCGTGATCGCAGTACTTACTTGCTGGGCGA
GAAACGTGAGGCCAGGGCCATCACGCTTTTGTTTCAGATCTGAGTTCCTT
CAAACCGGAGGAGTCTCGTTCTTGCCAGCTACGTCGCGGTGGGGCGGACG
GACAGCATCGGTGGTGAGAGTGCGACGGTGAATTTTTGCGGTGGGCTGCT
TCCATATATGTAGTGCTCATGAACCATGGAGACTTGAATAGACGAGGGCC
TCGGTGACCGACGACTGGGCAGATAGTGCCCCACCCGGCTCTCAGGGTCG
TTATTTAGCCACTGCTGCTGTATGTGACATGTGCAAGAATATGGTAATGC
TCCAGAGAGAGTTCTGCCTCTGGGTCACCTGTTCTATGGCTGTCTCTCGG
CAGTCCCGACTATTTTTGCTGCCGGGGCCCTTCTTGTGCTGTCCCGCCCT
TTTTCCTCTCTCAATCTCCTTGCTGTACGATTGACCAATTTCTCCCGCTG
GCTGTCGTCAACAGTAAGGGCTCCAAGTTTTTTGCTGCATACATCATCCT
CATCTAGTGCTTGCGCTTCTGCAGTAGTCCGGAGACCGTGCATACTTGCC
TAGTAAGGAACTCGTGTACCAGGCGCGATACTGACGTTATTTGGTCTTTG
ATTGAGTGTTGACAGCAGCAGTAGCAGTTGCTGGCCAGTACCTTCATGTT
TGCAATAAACAATAATTAACCTTTTGAAGGTAGGCACACATTTACGGACG
CTCTCCTCTACCTCACCCGTTGCGCCTGCCTGTGACTGCCGTACTTCCGC
CTTCAAACTTTCGGCATTCTGCGCCACCCGTGGCTGTTGCTTTATTAGCA
GCACCTTGCGAGTTGAAAAGCTCACCCTTAAAGTCCTAGACCACATGTGC
ATGCTATTACCCCATGTATTCTAGCCGCCAGTCCACACCTTTTGTAACTT
GCGGGCGCACCGGCCAGGATTACACAGGAGGAAGGTCAACACACAGGATG
CTTTAATTTCTCCACTTTCCTTCCGTGGTGCTTGCCTTATTTTTTATCCC
CAGAAGGATTTGACCGTCCCTTTCCCTCGTCGACTTTCGAGTCAACTTTG
CGTACAGTACTCACGAAATGAGCACGTTCCACGGCTAGGTACATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCT
GTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGTGTGCGCGTGCGTGTGTGC
GTGTGCGTGTGTGTGTTTACCCTCCATTTCTGGCCACCAGTTTGTACACC
TTTCGGTATGAAGTGGGTGCACCAGCCGGGGTCACACAGAAGGAAGGTCG
CACGAGAGTTTTTTTCCCCCCACCCCCCTTCTTCTATGGTACTTGTCTTT
TTTGCTCCTTAGCTTTTCAAAGCGAGAAGGGGTCAAGCATCCCAGCACCC
TCGTCGACTGTTCAGTCGAATGTGTTTGTGTGTGTGAGGGGGGGAAACCG
GCTCTCCGAGCATCACACTCGCGACCTATAGCTGCCAGAAGGTTTCGAGA
CTTTAGCAACTGAACCACCGGGCTAGCTTCAATGTACAGCAGGCGGCGTG
ATGCGTGAATAAGTATCTCAAAAAGGACCCTGCCGGCATCCGGCGACCAC
ACCACCAGCAAGCACAGCGAATCCTGTGCTTGTCCGGACGAACGGCATTG
CTAAGGAATATCTCACACGTCCCAAATCAGTAGAAGAAATTCTTCTCTTG
GATCAAAACCCACGGGAAGAGTTCAGACGTGCCTGGCAGTAGTGGTTGGT
GGCAAGTCTCCGTTGCGTGAATCGGCGTTTGATTCGGATTTCCGAGGGCT
ACCCAACCACGGTGCCTGCCTATTAGCCCAAAGTGCTTGTTAGATGAAAA
TACATTGCCGTGCTTCCTTCCCACAAATGTTGATGATATCTTTTCCCGAT
TCGTGTATGGTGTCAGGGCCAAGGAAAGGCGAGACTGAGATGACTCGATA
ACCTTTGACCAGAGTACCGTCTACAGTGTTAACTGTGCGCCGGCATATAT
TGCTGTGCCACTTATCAGTACACGTCGTTTATTGGCAGTGCCGTCTGGTC
GAATTTCCCCACTACACAGGCGCGATAAACACATACATATGACGCGCCGT
CCTTTATTTATCATGTACCCCCCTCTCGTTTCATCGCAGGAGGCGTCATA
GGGCACGATGGAGCGCAGTTTCGGTGCGGATGCCCTGCTCAACGAGTCTT
GGGCAACCCCGTGGCTCGACGAGGGCGTCTTCCCGTACTGGTCGCAGGCT
GTGAGTTTCGGCGACCTGGAAGACTTCTTCCGGTGGCTTGTCGTGCAGGA
CAGCCGCCGCGCAGCGTTAGTCCTCAATCACGCCCGGGAGTTTGAAAAGG
TACATCACCTGGTCACCACGGAGCTTTCGAGACCGAAGCGGCAGGAGGAG
CAGCAGCAGCAGCGGCAGCAGCCTTACCGTCAAGGAGGTCAGACTCCCCG
GCCGTGGGCATCGTCGACAAGTGTAGGGATGGAAATGCGTGGAGGGACGG
CGAGAGGGCCACCTGCCCAGGCCTTGGCTTCTTCAGGCGGGGGAGAGGAG
AGACGCCGTGGCCCTGGGGGCGGGAGAAACAAGACTAGTAGTCCCCCTTT
TCGCAACAGCAAAATCACCAACGTTGCTCTTGACGCCTCGTCTTCGTCAC
ACCAATCTTCAGATGCACGGCGGAGCAAGCGGCTGTTCGCGAGCGGCGGT
AGCGGTAGCGGCGGCGGCAGGGGCGGCCGCGGCGTAGGTGGTGGTGAGCG
TGACCGTGTAGGTGGTGGCCGTGCGGCGACATCGGTGATGCCGCCAAGCG
GAAGCTATTCTTGGCCGCTGCCGCCCAATTTATTTTCAGCGCCGGTAAGT
AGACAGCACGACGAACGAAATTCACGGCACAAGACGAGGAGCAGCATCCC
GTCCTCGGAGGCGTTGGGATTTAGTAGCCGCCGGCGGGGTACGCCAGCAC
CCCGCAGCCGGGTCGCTGCGCAAATGGCGTCCTCAACCTCGAGCGCAGCG
GCCGTGGTTGGTTATTACCGTCGACCAGACGCCCCTGCCGCTTCTGACAA
CCCGAGGAGGACCACGAGGCAATGGAGCAACCTCAGGGTGGGGGCCGGGG
GAGCGGTGACTGGTAATCTTGGTGTTGGAGGCAGCAGCCGTAGCAGTAGC
AGCGGTGGCGGCAACGGCAATGACAACGGCAACAGCAGTCGTAGAGGCAG
CAGCAGCGGTAGTATGGGTGCCAGCGGCAGCCGTAGTGGTGGTGGCAGCA
GCAGCAGCGGCCGTAGTGGCACGAAAATGACCAGCAGAGAAGCGCACGGG
CCGGGAGCCGCCGCAGGAGGGCGTCCAGGGTTCTCATCGTGGGCAGCCAT
GGCGGCCGCGGTGGTTGCAACTGAGGCGGCCGGGAAAACGGCTACAGTTC
GGCAGGCGGTGGAGGCAGCCGCTGCTGAGGCAGAGGCAGCGGAAAATCAT
GTGGGGACCGGACAGGGAAAGCGGGGACGCGGGATTTTGTCCCCCGAAAA
ACAGTTTTCCGGTAGGGCAGGGGGGCTAGCCAGACGCTCGTCTCGTCGCT
CCTCAACCCCCACGGCATGGGACAAGAGCAACGGCAACGGCCTCAAGGGC
GGAGGGGTCACAAGGATCCGCCGCAACCTCCGCAAGGACATGCCCGTCAA
TCTCGGCCTCTCGACACCGGCGTCAGACCTCGACGTCGGCGAGCGGTCCT
CGCCGCTCCGCGTCGCCGGCCCTACCCCAGCAGGAAGCGTAAACGGCCAT
CGGGAAGTGGGTGAGCGTGTTTCGCCGTCGGAGCATCGACAACAGGTCCA
GTTCCTACGCTCCCCCCGAAGCCTGCTGCGAGACATCGACGAGACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig84:59094..63289-

>mRNA_P-littoralis_Contig84.6.1 ID=mRNA_P-littoralis_Contig84.6.1|Name=mRNA_P-littoralis_Contig84.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1689bp|location=Sequence derived from alignment at P-littoralis_Contig84:59094..63289- (Pylaiella littoralis U1_48)
ATGGAGCGCAGTTTCGGTGCGGATGCCCTGCTCAACGAGTCTTGGGCAAC
CCCGTGGCTCGACGAGGGCGTCTTCCCGTACTGGTCGCAGGCTGTGAGTT
TCGGCGACCTGGAAGACTTCTTCCGGTGGCTTGTCGTGCAGGACAGCCGC
CGCGCAGCGTTAGTCCTCAATCACGCCCGGGAGTTTGAAAAGGTACATCA
CCTGGTCACCACGGAGCTTTCGAGACCGAAGCGGCAGGAGGAGCAGCAGC
AGCAGCGGCAGCAGCCTTACCGTCAAGGAGGTCAGACTCCCCGGCCGTGG
GCATCGTCGACAAGTGTAGGGATGGAAATGCGTGGAGGGACGGCGAGAGG
GCCACCTGCCCAGGCCTTGGCTTCTTCAGGCGGGGGAGAGGAGAGACGCC
GTGGCCCTGGGGGCGGGAGAAACAAGACTAGTAGTCCCCCTTTTCGCAAC
AGCAAAATCACCAACGTTGCTCTTGACGCCTCGTCTTCGTCACACCAATC
TTCAGATGCACGGCGGAGCAAGCGGCTGTTCGCGAGCGGCGGTAGCGGTA
GCGGCGGCGGCAGGGGCGGCCGCGGCGTAGGTGGTGGTGAGCGTGACCGT
GTAGGTGGTGGCCGTGCGGCGACATCGGTGATGCCGCCAAGCGGAAGCTA
TTCTTGGCCGCTGCCGCCCAATTTATTTTCAGCGCCGGTAAGTAGACAGC
ACGACGAACGAAATTCACGGCACAAGACGAGGAGCAGCATCCCGTCCTCG
GAGGCGTTGGGATTTAGTAGCCGCCGGCGGGGTACGCCAGCACCCCGCAG
CCGGGTCGCTGCGCAAATGGCGTCCTCAACCTCGAGCGCAGCGGCCGTGG
TTGGTTATTACCGTCGACCAGACGCCCCTGCCGCTTCTGACAACCCGAGG
AGGACCACGAGGCAATGGAGCAACCTCAGGGTGGGGGCCGGGGGAGCGGT
GACTGGTAATCTTGGTGTTGGAGGCAGCAGCCGTAGCAGTAGCAGCGGTG
GCGGCAACGGCAATGACAACGGCAACAGCAGTCGTAGAGGCAGCAGCAGC
GGTAGTATGGGTGCCAGCGGCAGCCGTAGTGGTGGTGGCAGCAGCAGCAG
CGGCCGTAGTGGCACGAAAATGACCAGCAGAGAAGCGCACGGGCCGGGAG
CCGCCGCAGGAGGGCGTCCAGGGTTCTCATCGTGGGCAGCCATGGCGGCC
GCGGTGGTTGCAACTGAGGCGGCCGGGAAAACGGCTACAGTTCGGCAGGC
GGTGGAGGCAGCCGCTGCTGAGGCAGAGGCAGCGGAAAATCATGTGGGGA
CCGGACAGGGAAAGCGGGGACGCGGGATTTTGTCCCCCGAAAAACAGTTT
TCCGGTAGGGCAGGGGGGCTAGCCAGACGCTCGTCTCGTCGCTCCTCAAC
CCCCACGGCATGGGACAAGAGCAACGGCAACGGCCTCAAGGGCGGAGGGG
TCACAAGGATCCGCCGCAACCTCCGCAAGGACATGCCCGTCAATCTCGGC
CTCTCGACACCGGCGTCAGACCTCGACGTCGGCGAGCGGTCCTCGCCGCT
CCGCGTCGCCGGCCCTACCCCAGCAGGAAGCGTAAACGGCCATCGGGAAG
TGGGTGAGCGTGTTTCGCCGTCGGAGCATCGACAACAGGTCCAGTTCCTA
CGCTCCCCCCGAAGCCTGCTGCGAGACATCGACGAGACG
back to top