mRNA_P-littoralis_Contig84.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.49.1
Unique NamemRNA_P-littoralis_Contig84.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:356574..357844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size341
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791701.949983-CDS-P-littoralis_Contig84:356574..3568361680791701.949983-CDS-P-littoralis_Contig84:356574..356836Pylaiella littoralis U1_48CDSP-littoralis_Contig84 356575..356836 -
1680791701.9623013-CDS-P-littoralis_Contig84:357767..3578441680791701.9623013-CDS-P-littoralis_Contig84:357767..357844Pylaiella littoralis U1_48CDSP-littoralis_Contig84 357768..357844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.49.1prot_P-littoralis_Contig84.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 356575..357844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.49.1

>prot_P-littoralis_Contig84.49.1 ID=prot_P-littoralis_Contig84.49.1|Name=mRNA_P-littoralis_Contig84.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
THPFPFPCYPSCAGGDKKPSTAEARLNMGKNKPSGAAKRKRARANAQKNN
DMVKVSLYVKKAADRSARRRTAAAAAAAAAHASSAAAASASAPASTVPPI
DEQKEAGDRVRVA
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mRNA from alignment at P-littoralis_Contig84:356574..357844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.49.1 ID=mRNA_P-littoralis_Contig84.49.1|Name=mRNA_P-littoralis_Contig84.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1271bp|location=Sequence derived from alignment at P-littoralis_Contig84:356574..357844- (Pylaiella littoralis U1_48)
ACACACCCCTTCCCCTTCCCCTGCTATCCCTCCTGCGCCGGCGGCGATAA
GAAACCGAGTACAGCAGAAGCACGGCTGTGAGTAGTCAGCCGTTGTAGGT
TTGTCTTGCAGACTTCATCCACTTCCGGAGCACTTTCTCCTGTCCATCTT
GTGGTTTGAGGCGTATCCTACGGACCTTTATCTTTGTACCTTCTTCTGCT
TCCGTGCCGCTTGTAGGAGAACACATAGATGATGGCCACGAAATCTTCTG
TGAGCCCTTGCTCCACTTCTGCGGCGCTTGCTGTCAGCACACCCACCCGA
GTACTGCTATATCGCTGACTCATCCACTCACACGAGTACTGCTGTACTGC
TCACTGATCCACTGTTGGTTGCTGCTGGTATTGTATATAGACTCCTGTGT
GACCTTCCTTCTGCGTTACCTTACATCAACAAAAAATACAATACCAGCAG
CAATACGCAAACGCAAGTGGCAGAATGCGTTTGAGTTGCTCGCCTTCCTC
CACCTGTACTCATTACCGTCAACTTAAGAAGTTGGTAGGTAGAAAATTCG
CTAAATGTGTCTAAACACACCTACTTGCCCTCGCTAGAGTTACGACAAAG
GAACGATGGTCTCTTCAATCCCAGGAGCTGAAACACGCCACAAACTCCTA
TGTTGGCCGAACCATATGAACCAGTAGGAAACAAAACCATGGCGCTGTCA
GGTCAACAACGGAGAAAGCGGAAGAAAGCTCAGATAGAACAAGACCAATG
GAGCAATGATTTACATCAAGTGGAGCTTGCAAATGAAGCTGCACAAAGCT
CAAAGAAGGCAACAAGCGACGAAAAAAAAACAAACAAGAAAAAAAACGAG
AGCTCGGTGTGGCTACTACCCCTGTCGCTGCTGGCGACGCCGCCGCCACC
GCCGCCGTGAAAGGGAATATCGCCGCCCCTGCCGGTAATGGACCGGTCTC
AACCAAGGAGCCCTAACCCTAACCCTCCGGTGCTCTCCCCTGTTGTATGT
ACATGTAGGAACATGGGGAAGAACAAGCCTTCTGGTGCTGCGAAGAGAAA
ACGGGCAAGGGCAAATGCCCAAAAAAACAACGACATGGTGAAAGTGTCAC
TCTACGTGAAAAAGGCAGCCGACAGATCCGCAAGGAGAAGAACTGCCGCC
GCTGCTGCTGCTGCTGCTGCACATGCCTCGTCCGCTGCCGCTGCTTCTGC
TTCTGCCCCCGCTTCGACCGTGCCCCCGATAGACGAGCAGAAAGAGGCGG
GCGATCGCGTTCGGGTGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:356574..357844-

>mRNA_P-littoralis_Contig84.49.1 ID=mRNA_P-littoralis_Contig84.49.1|Name=mRNA_P-littoralis_Contig84.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig84:356574..357844- (Pylaiella littoralis U1_48)
ACACACCCCTTCCCCTTCCCCTGCTATCCCTCCTGCGCCGGCGGCGATAA
GAAACCGAGTACAGCAGAAGCACGGCTGAACATGGGGAAGAACAAGCCTT
CTGGTGCTGCGAAGAGAAAACGGGCAAGGGCAAATGCCCAAAAAAACAAC
GACATGGTGAAAGTGTCACTCTACGTGAAAAAGGCAGCCGACAGATCCGC
AAGGAGAAGAACTGCCGCCGCTGCTGCTGCTGCTGCTGCACATGCCTCGT
CCGCTGCCGCTGCTTCTGCTTCTGCCCCCGCTTCGACCGTGCCCCCGATA
GACGAGCAGAAAGAGGCGGGCGATCGCGTTCGGGTGGCG
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