prot_P-littoralis_Contig839.6.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig839.6.1
Unique Nameprot_P-littoralis_Contig839.6.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length306
Homology
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.650e-26
Identity = 78/188 (41.49%), Postives = 103/188 (54.79%), Query Frame = 0
Query:    7 PGRNPGHNRLRKPDPSLAPAVPVSEHTRTIPAPRGVGDSGGGACSRKAAEDDADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKAN---VCPTCRLEFTKITMTMSSKDLIKEEARKAHDKKKRTNKRQFARTKR-KAARVKNPVEGVYVKVFRVRKKTQNLTSAQQAALPHPQAPGGHLH 190
            PG  P +N+     P+LAP +P S  T+ IPAP           +RKAA DDA K E C IC   LPD+ RGII CGH FCF CIH W+       +CP+CR  F KI  T+S KD+ KE+ R   D                +AARVK PV+ ++VK  RVRK ++   + ++A   HP+A GG ++
Sbjct:    7 PGDAPNNNKRH---PALAPFLPKSLITKKIPAPHPEDVER----TRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERDXXXXXXXXXXXXXXXXRAARVKQPVDKIFVKDVRVRKMSKKKQAIEEARTVHPEAAGGSMN 187          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.550e-25
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   65 CCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKANVCPTCRLEFTKITMTMSSKDLIKE--EARK---AHDKKKRTNKRQFARTKRKAARVKNPVEGVYVKVFRVRKKTQNLTSAQQAALPHPQAPGGHLH 190
            C ICC +LP++ RG++ CGHVFCF CIH W+K +++CP CR++  +IT T+S  D  K   E RK   +    K+  ++Q  R + + +R KNP  G   K  RVR K+  +T AQQ A PHPQA GG ++
Sbjct:  176 CAICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRAAPHPQARGGWMY 306          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.650e-25
Identity = 73/187 (39.04%), Postives = 99/187 (52.94%), Query Frame = 0
Query:    7 PGRNPGHNRLRKPDPSLAPAVPVSEHTRTIPAPRGVGDSGGGACSRKAAEDDADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKAN---VCPTCRLEFTKITMTMSSKDLIKEEARKAHDKKKRTNKRQFARTKRKAARVKNPVEGVYVKVFRVRKKTQNLTSAQQAALPHPQAPGGHLH 190
            PG  P +N+     P+LAP +P S  T+ IPAP           ++KAA DDA K E C IC   LPD+ RGII CGH FCF CIHTWS ++    +CP+CR+ F KI  T+S KD+ KE+ R                         N V+ ++VK  RVRK ++   + ++A   HP A GG ++
Sbjct:    7 PGDAPTNNKRH---PALAPVLPKSLITKKIPAPHPEDVER----TKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLR-------------------------NEVDKIFVKDIRVRKMSKKKKAIEEARTLHPDAAGGSMN 161          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.620e-15
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0
Query:    7 PGRNPGHNRLR-----KPDPSLAPAVPVSEHTRTIPAPRGVGDSGGGACSRKAAEDDADKEEP------------------CCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKANVCPTCRLEFTKITMTMSSKDLIK 122
            P + PG   L+     K  P+LAP    SE TRT P P  +     G     + E++A + E                   C ICC +LPD+ RG++ CGHVFCF CIH W+K +++CP CR++  +IT T+S  D  K
Sbjct:    3 PPQRPGSGWLQNANGNKNQPTLAPTPDQSEVTRTAPLPEELIARTEGV----SKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAK 137          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: D8LMP4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.130e-13
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 0
Query:   65 CCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKANVCPTCRLEFTKITMTMSSKDLIKEEARKAHDKKKRTNKRQFARTKRKAARVKNPVEGVY---------VKVFRVRKKTQNLTSAQQAA-LPHPQ 183
            C IC   LPD  RGI+ C HVFCF CIH W+K  + CP CR+E   IT T+S +++ +   R  HD  +   K Q  R + K  + + P   V+          K  RV+ +TQ     +  A  PHPQ
Sbjct:   41 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPHDPSQVRTKAQIKRARAKRFKCRKPASVVFDDIYIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQ 169          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A2G5F606_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F606_AQUCA)

HSP 1 Score: 58.5 bits (140), Expect = 5.950e-6
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
Query:   62 EEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWS------KKANVCPTCRLEFTKITM 113
            +EP CI C       RGI+PCGH FC+ CI TW+      +K + CP C+  F+ ITM
Sbjct:  382 DEPSCIICWTDFSSTRGILPCGHRFCYSCIQTWADLEASRRKVSTCPLCKASFSSITM 439          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A7J6URH0_THATH (Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6URH0_THATH)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0
Query:   63 EPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWS------KKANVCPTCRLEFTKIT 112
            +P CI C       RG++PCGH FC+ CI TW+      +K + CP C+  F+ IT
Sbjct:   21 DPSCIICWTDFSSKRGVLPCGHRFCYSCIQTWADLEVSRRKVSTCPLCKARFSSIT 76          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: F4PI92_CAVFA (RING-type domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PI92_CAVFA)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-5
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 0
Query:   58 DADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKANVCPTCRLEFTKITMTMSSKDLI 121
            DA +EEP C  C  + D       C H+FCF C+H WSK A VCP C+ +F +I      K ++
Sbjct:  163 DAAEEEPECGICLDIVDDKAKPDGCRHIFCFECLHRWSKTATVCPNCKADFQEIQREGGEKHVL 226          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A6D2IRI2_9BRAS (RING-type E3 ubiquitin transferase BRCA1 n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IRI2_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 2.360e-5
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 0
Query:   53 KAAEDDADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWS------KKANVCPTCRLEFTKIT 112
            K  E +   +  C ICCT      RGI+PCGH FC+ CI TW+      +K+  CP C+  F  IT
Sbjct:  302 KPEETEETTKVSCVICCTDYSST-RGILPCGHRFCYSCIQTWADQLVSQRKSTTCPLCKSSFVAIT 366          
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Match: A0A834GB78_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GB78_RHOSS)

HSP 1 Score: 55.5 bits (132), Expect = 5.940e-5
Identity = 36/95 (37.89%), Postives = 48/95 (50.53%), Query Frame = 0
Query:   24 APAVPVSEHTRTIPAPRGVGDSGGGACSRKAAEDDADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWS------KKANVCPTCRLEFTKIT 112
            APAV   E T   P   G G+S G A + + +   A  +  C IC T      RG++PCGH FCF CI +W+      +K + CP C+  F  IT
Sbjct:  299 APAV--VERTFQDPYSYGNGNSNGNAHTARLS---ASADLSCVICWTDFSST-RGVLPCGHRFCFSCIQSWADLMASRRKISTCPLCKAGFVSIT 387          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig839.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FGW0_ECTSI1.650e-2641.49RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI2.550e-2544.27Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5L829_9PHAE5.650e-2539.04RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE3.620e-1536.69RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP4_ECTSI7.130e-1337.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2G5F606_AQUCA5.950e-644.83Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
A0A7J6URH0_THATH1.140e-541.07Zinc finger (C3HC4-type RING finger) family protei... [more]
F4PI92_CAVFA2.080e-540.63RING-type domain-containing protein n=1 Tax=Cavend... [more]
A0A6D2IRI2_9BRAS2.360e-540.91RING-type E3 ubiquitin transferase BRCA1 n=1 Tax=M... [more]
A0A834GB78_RHOSS5.940e-537.89Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 220..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..306
NoneNo IPR availablePANTHERPTHR46077:SF1TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATEDcoord: 52..257
NoneNo IPR availablePANTHERPTHR46077E3 UBIQUITIN-PROTEIN LIGASE TOPORScoord: 52..257
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 56..113
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 65..104
e-value: 0.0025
score: 27.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 65..105
score: 12.54829
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 49..155
e-value: 9.1E-12
score: 46.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 82..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig839contigP-littoralis_Contig839:59896..65073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig839.6.1mRNA_P-littoralis_Contig839.6.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig839 56202..65073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig839.6.1 ID=prot_P-littoralis_Contig839.6.1|Name=mRNA_P-littoralis_Contig839.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=306bp
MDPSRLPGRNPGHNRLRKPDPSLAPAVPVSEHTRTIPAPRGVGDSGGGAC
SRKAAEDDADKEEPCCICCTQLPDVGRGIIPCGHVFCFCCIHTWSKKANV
CPTCRLEFTKITMTMSSKDLIKEEARKAHDKKKRTNKRQFARTKRKAARV
KNPVEGVYVKVFRVRKKTQNLTSAQQAALPHPQAPGGHLHGAGGVVVDAA
AGVGVVFMRRYPTAHAQRAHMQVQNAAERAREEAAEARSRARAARKQAVA
ARQQAVRAAELAAKDNAPDVRNRTAEEEDGEEEEEEEEGSVVAGSETSFV
GGEGGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS