mRNA_P-littoralis_Contig836.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig836.32.1
Unique NamemRNA_P-littoralis_Contig836.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 3.420e-78
Identity = 152/308 (49.35%), Postives = 193/308 (62.66%), Query Frame = 1 
Query:    1 GVSEAEANIALAKGPRSPSLPVAKEGXXXXXXXXXXXEYRRIQRQSVSDHRVELGKKNFWAVVRRFFKESVRGLPSSPLQLATWIIQDGEFLPSHSWICPTSAAAMDPARAEAYFTALMTPQLFTRAHAYVLFFSGGQGGRVSSSYELWDSMDRAFEDFTIDEAKVCSHDRIRVEGELDAARLRLARNIASQRCEAAGVLRFPVSQDSDIDEPGAPDEVLEDNSFEWSGFPTPPCMPSPSNLVLRDRLASLVRTSTDTSAASESLPLLVHPTCVEPGCERTGNLGMVKCSMCDGDLHRSCGSQLDDDD 924
            GVS  E NIALA                         EYR +QR  VS+ R ++GKKNFW V+RRF +E +RG+  SP+QL +W I DGE +PSH+WICPTSA AM+ ARA+AYFTALM+P LFTR  AY+LFFSGGQGGRVSSS+  WD  DR F + T+D+AKVCSHDR  +EG +D AR R+ R+IA      AGV+ FPV  DSD    G+  +V        +                R +   + RT+ DTS+ASE LPL++ P CVEPGC + GN+ MV C++CDGDLHRSCG +  ++D
Sbjct:  441 GVSRTEVNIALA-------------------------EYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRAPAGVVNFPVDADSDA---GSDSDVAXXXXXXXA----------------RRQWDRIGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEED 704
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BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.160e-76
Identity = 153/334 (45.81%), Postives = 196/334 (58.68%), Query Frame = 1 
Query:    1 GVSEAEANIALAKGPRSPSLPVAKEGXXXXXXXXXXXEYRRIQRQSVSDHRVELGKKNFWAVVRRFFKESVRGLPSSPLQLATWIIQDGEFLPSHSWICPTSAAAMDPARAEAYFTALMTPQLFTRAHAYVLFFSGGQGGRVSSSYELWDSMDRAFEDFTIDEAKVCSHDRIRVEGELDAARLRLARNIASQRCEAAGVLRFPVSQDSDIDEPGAPDEVLEDNSFEWSGFPTPPCMPSPSNLVLRDRLASLVRTSTDTSAASESLPLLVHPTCVEPGCERTGNLGMVKCSMCDGDLHRSCGSQ---LDDDDEDALPDRRCSSCA-TNPGK*RAR 990
            GVS+ E N+ALA                         EYR++QR  V++ RVELGKKNFW ++RRF +E +RG+  SPLQ+ TWIIQD + +PS SWICP+SA  MD ARA+A+  AL  P LF R HAY+LFF+GGQG R+ +S+E WD+ DR F D T+D+AKVCSHD + +EG +DAAR R  R +A+ R    GV  F    DSD            D + +      PP    P +   R   A + RTS D S A+E LPL+V P C+EPGC   GN+GM+ C  C GDLHR CG       DD+ D+   +RC+ CA    GK RAR
Sbjct:   92 GVSQTEINVALA-------------------------EYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLPGVANFGFGPDSD-----------SDATSDVGARAAPP----PRS---RRVWAGIGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDSFVGQRCTPCAYPRRGKKRAR 382
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BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.120e-46
Identity = 110/272 (40.44%), Postives = 142/272 (52.21%), Query Frame = 1 
Query:  202 KESVRGLPSSPLQLATWIIQDGEFLPSHSWICPTSAAAMDPARAEAYFTALMTPQLFTRAHAYVLFFSGGQGGRVSSSYELWDSMDRAFEDFTIDEAKVCSHDRIRVEGELDAARLRLARNIASQRCEAAGVLRFPVSQDSDIDEPGAPDEVLEDNSFEWSGFPTPPCMPSPSNLVLRDRLASLVRTSTDTSAASESLPLLVHPTCVEPGCERTGNLGMVKCSMCDGDLHRSCGSQLDDDDEDA----LPDRRCSSCATNP-GK*RAR*FLF 1002
            + + RG+  SP+QL +W I DGE +PSH+WICPTSA AM+ ARA+AYFTAL++P LFTR  AY+LFFSGGQGGRVSSS+E WD  DR F + T+D+AK                                                             W                  DR+    RT+ DTS+ASE LPL+V P CVEP C + GN+ MV C++CDGDLHRSCG +  ++D DA        +CS C+T   GK ++R  L+
Sbjct:  215 RSTPRGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK-------------------------------------------------------------W------------------DRIG---RTAEDTSSASEDLPLIVCPKCVEPRCTKAGNIAMVACNLCDGDLHRSCGVRGGEEDADADVVEFQGIQCSRCSTTSHGKRKSRASLY 404
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BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.640e-36
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:  112 EYRRIQRQSVSDHRVELGKKNFWAVVRRFFKESVRGLPSSPLQLATWIIQDGEFLPSHSWICPTSAAAMDPARAEAYFTALMTPQLFTRAHAYVLFFSGGQGGRVS 429
            EYR +QR  VS+ R E+GKKNFW V+RRF +E +RG+  SP+QL +W I DGE +PSH+WICPTSA AM+ ARA+AYFTALM+P LFTR  AY+LFFSGGQGGRVS
Sbjct:  278 EYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 383
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BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 9.730e-24
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  490 AKVCSHDRIRVEGELDAARLRLARNIASQRCEAAGVLRFPVSQDSDIDEPGAPDEVLEDNSFEWSGFPTPPCMPSPSNLVLRDRLASLVRTSTDTSAASESLPLLVHPTCVEPGCERTGNLGMVKCSMCDGDLHRSCG----SQLDDDDEDALPDRRCSSCAT-NPGK*RA 987
            AK CSH R+ +EGE+DAAR ++ R++A+ R   +GV+ FPV  DSD           ED++   +        P P+ L    R   L R   DTSAAS +LP++  P C+EP C  +GN+ MV C++C+G++HR CG    ++ DD + +     RCS CA  N GK RA
Sbjct:  144 AKACSHSRLTLEGEMDAAREKIVRDLAAARGAPSGVVNFPVGPDSDN----------EDDAGHRNSSDNTRSTPRPTAL----RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKRA 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig836.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPH8_ECTSI3.420e-7849.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI3.160e-7645.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI2.120e-4640.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBK2_ECTSI4.640e-3667.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFC4_ECTSI9.730e-2439.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig836contigP-littoralis_Contig836:108538..111585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2682
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.8624394-UTR-P-littoralis_Contig836:108537..1087411680791699.8624394-UTR-P-littoralis_Contig836:108537..108741Pylaiella littoralis U1_48UTRP-littoralis_Contig836 108538..108741 +
1680791699.8737462-UTR-P-littoralis_Contig836:109107..1092181680791699.8737462-UTR-P-littoralis_Contig836:109107..109218Pylaiella littoralis U1_48UTRP-littoralis_Contig836 109108..109218 +
1680791699.8964472-UTR-P-littoralis_Contig836:109884..1115851680791699.8964472-UTR-P-littoralis_Contig836:109884..111585Pylaiella littoralis U1_48UTRP-littoralis_Contig836 109885..111585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.885171-CDS-P-littoralis_Contig836:109218..1098841680791699.885171-CDS-P-littoralis_Contig836:109218..109884Pylaiella littoralis U1_48CDSP-littoralis_Contig836 109219..109884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig836.32.1prot_P-littoralis_Contig836.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig836 109219..109884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig836.32.1

>prot_P-littoralis_Contig836.32.1 ID=prot_P-littoralis_Contig836.32.1|Name=mRNA_P-littoralis_Contig836.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=222bp
MDPARAEAYFTALMTPQLFTRAHAYVLFFSGGQGGRVSSSYELWDSMDRA
FEDFTIDEAKVCSHDRIRVEGELDAARLRLARNIASQRCEAAGVLRFPVS
QDSDIDEPGAPDEVLEDNSFEWSGFPTPPCMPSPSNLVLRDRLASLVRTS
TDTSAASESLPLLVHPTCVEPGCERTGNLGMVKCSMCDGDLHRSCGSQLD
DDDEDALPDRRCSSCATNPGK*
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mRNA from alignment at P-littoralis_Contig836:108538..111585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig836.32.1 ID=mRNA_P-littoralis_Contig836.32.1|Name=mRNA_P-littoralis_Contig836.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3048bp|location=Sequence derived from alignment at P-littoralis_Contig836:108538..111585+ (Pylaiella littoralis U1_48)
GGAGTTTCGGAGGCCGAGGCGAACATCGCCCTCGCAAAAGGACCAAGGTC
GCCCTCACTTCCAGTCGCAAAAGAAGGAGTTTCGGAGGCCGAGACGAACA
TCGCCCTTGCTGAGTACCGCCGCATCCAGCGCCAAAGCGTCTCCGACCAC
CGCGTGGAGCTCGGGAAGAAGAATTTCTGGGCCGTAGTTCGTCGCTTCTT
CAAGGTGCGTCCGTCCTCATCTGTTTTGTGCGCTTCTCTCTGCGTTCCCC
TTTTCCTGGGTCTTCCCTCTTGCTTTCCTGTTGTTGTTGTTCGGATATTT
GTTTTTGCCGTGGCTCTTGTCTTGCGGCCTACTTTCTTCTCCTTCTTGTA
CCTTTTTCTTGTTGTGTCACGTGCGACCTCCTACGTTTGTTCTTTCTTTC
TAGTCCTTGTTCTTTGTGTCTTTTCCTCAGCTTTTCTCCTCCCGTATTTT
GTTCTTCATTTTTCCCAACCGTTGTCCTCATCCTGTAACTCCTCCCTTCT
CGTCCTTGCCTACGTTGTTGCCCTCTTTTTTCTGTTCTTGCCTCCGTCCG
TCCCCCCCTGTCGTTTTTAGGAAAGTGTGCGTGGGCTGCCATCATCTCCT
CTGCAGCTCGCCACCTGGATCATTCAGGACGGGGAATTCCTACCTTCTCA
CTCCTGGATTTGTCCCACCTCTGCTGCTGCGATGGACCCTGCTCGCGCCG
AAGCGTACTTCACGGCGCTCATGACCCCCCAACTCTTCACCCGCGCACAT
GCGTACGTCCTCTTCTTCTCCGGCGGACAGGGAGGCCGTGTCAGCTCCTC
CTACGAACTGTGGGACAGCATGGACCGCGCCTTCGAAGACTTCACTATCG
ACGAGGCCAAAGTGTGCTCCCATGACCGCATTCGGGTCGAGGGCGAGCTC
GACGCCGCCCGCCTCCGCCTTGCCCGTAACATCGCCTCCCAGAGGTGTGA
GGCTGCCGGCGTTCTGCGCTTCCCCGTCTCCCAGGATTCGGACATCGACG
AGCCCGGCGCCCCTGACGAGGTCCTCGAAGACAACAGCTTCGAGTGGTCT
GGCTTTCCGACGCCCCCTTGCATGCCGAGTCCTTCCAACCTTGTCCTGCG
TGATCGTTTGGCCTCCCTCGTTCGGACGTCAACCGACACCTCAGCTGCTT
CCGAATCCCTACCCCTCCTCGTCCACCCTACTTGCGTGGAGCCGGGGTGC
GAGAGGACTGGAAACCTGGGCATGGTGAAGTGCTCCATGTGCGACGGCGA
CCTACACCGCAGCTGCGGTTCTCAGCTGGACGACGACGACGAAGACGCCC
TGCCCGACCGCCGTTGCTCCAGCTGCGCCACCAACCCCGGAAAATAGAGG
GCCCGCTAATTTCTTTTTTTTGTATGGTCCGTCCAGCACAATTTCCGTAA
TCTGTCACACCCCTGTTAGGTACACTCTTTTCGGGGTGTGCGTGGTTGTT
CCAAACTTCAAAAAACACCGTTAAAAGCGCTGTATTCAGGCGGCCAAAAC
TGTGGAGTTTTTTTTTGTTCCTTGTTCCTTGTTCCTTGTCCCTTCAGGTC
GGAAAAACCCTCTAATTTGTTCGCTTTTTATCTCGAGAACCGACCTAGTT
GATTTTTGAAAAGAGTGCGGCAAACGCTTTATCTCATCCATACCTGGAGT
TTTTCTTTTCTTTTATTGAGAAAAACGATATTTGTCGAGATATTTAGGGA
AAACCCTGTATAGCACCCCTTTTGCTTCGCTTTTTTTCGCGAGAAGCAAC
CTATCGATTTCAAAACAGAGTGCGGCAAACGCTTCCGCTCATCAATAATG
TCTGTCTCGTCTCGTCTCGACAGAACGGCTTAATTTTCATCAAGAATACG
GGGTACTTTTTTCTTGGTTTTTTCGTATGAGGAGAGGCCTTCAATGTGTC
GGTCTGCAAGGAATACGTGCCATTAATAACGAGGAGGTTCATAGCTTGCG
GTATGAGGACCGGGAGAAGCATACCCTGCGACTGTTTGTAGCTTCCTTTG
CTTGAGATGTATGTTATGTTGTTTCGAAAACGTCATGTTGTACATTTCAC
TACGGAGTCTTATCGATCCCGTCTTGGCAGTATGGCTTAAGAGTAATGAT
CACGTACTACGTACATACATATTTTTGGGTATATGAGATAATCTAGAGAT
TCTAAATTGTTTTTGATTTGAGGGGATTCAGCAGGTACTGTGAACTGCGT
GGGAAAGCAAGAGTACATAGTCTATCAAACATACGAAGAAAAAAACGTGT
GATAGTAGAACACGGACAATTAGAGTTGTTCGCATGTGAGAGTAGATACG
ATACCTGGGATCATTTCCTCCGTGTTCAATCAAAATTATTTATCGTTTTT
CCTTGGTTATGGATCCGTGTATTTCTCGCGTCCTTCCGTCAACGATGTTT
TCTGAAGTCGTTCTGTTTACCACGTGCTTTTGCGATTTTTTTGCATGCGA
TCAGTGCTGCATCTTCGGCCCCCCGCCGTTCTGTCTACACACACACCTGC
TGTCAGTAACTGGGCGTTGGCGTAAATTGGATGACTGGCAGCAGTCCTGT
GTCGGATGCCTGGATTTGAAGGGCGATTTCCCATATTTTCCTTATTTATA
TCCACCGCAGTCTCGGTGATGTCCCTTCGTTGTTGGTCTATGTTAGTCCT
TTGTTCGCATCTCTTGCGACGCCAAAGGGTATGATGTTGCATGTCCCCGT
ATTTTTTTTCCCAAGAGAGATGACGATCCCCTCGCCCGACCCGGCCTCCG
CCGACGCGCGATCTAAGGCTGAATCTTACACCGATTTTGAGACACAGGTT
TCCAAATCTCGTTGGGCCAAAATCGGTGGGCCCACAGGCTTGACTGTGTG
TCTTGTGGGACACACCGTTTTTGATACTCAAGCGTGTCGATTTAGCCCTG
GTTTTCAGCGTCCTCCAGAAGAAGCGTTTTGCATCAGGGACATGATTTAA
CAGAGAACAGGCCGCACCGCGCACCGTACACCACATAGATGTTGCTCGCT
GACACTGACACGGAGAGAACACCTGTGCTCTTGTTGTTTTCAGCGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig836:108538..111585+

>mRNA_P-littoralis_Contig836.32.1 ID=mRNA_P-littoralis_Contig836.32.1|Name=mRNA_P-littoralis_Contig836.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig836:108538..111585+ (Pylaiella littoralis U1_48)
ATGGACCCTGCTCGCGCCGAAGCGTACTTCACGGCGCTCATGACCCCCCA
ACTCTTCACCCGCGCACATGCGTACGTCCTCTTCTTCTCCGGCGGACAGG
GAGGCCGTGTCAGCTCCTCCTACGAACTGTGGGACAGCATGGACCGCGCC
TTCGAAGACTTCACTATCGACGAGGCCAAAGTGTGCTCCCATGACCGCAT
TCGGGTCGAGGGCGAGCTCGACGCCGCCCGCCTCCGCCTTGCCCGTAACA
TCGCCTCCCAGAGGTGTGAGGCTGCCGGCGTTCTGCGCTTCCCCGTCTCC
CAGGATTCGGACATCGACGAGCCCGGCGCCCCTGACGAGGTCCTCGAAGA
CAACAGCTTCGAGTGGTCTGGCTTTCCGACGCCCCCTTGCATGCCGAGTC
CTTCCAACCTTGTCCTGCGTGATCGTTTGGCCTCCCTCGTTCGGACGTCA
ACCGACACCTCAGCTGCTTCCGAATCCCTACCCCTCCTCGTCCACCCTAC
TTGCGTGGAGCCGGGGTGCGAGAGGACTGGAAACCTGGGCATGGTGAAGT
GCTCCATGTGCGACGGCGACCTACACCGCAGCTGCGGTTCTCAGCTGGAC
GACGACGACGAAGACGCCCTGCCCGACCGCCGTTGCTCCAGCTGCGCCAC
CAACCCCGGAAAATAG
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