mRNA_P-littoralis_Contig12.199.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.199.2
Unique NamemRNA_P-littoralis_Contig12.199.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 5.900e-120
Identity = 195/308 (63.31%), Postives = 229/308 (74.35%), Query Frame = 1 
Query:   10 DDDEQGCKRTGGGQRKTPWAEKLKKPITVDTKLEKRLDYHLSDLETGLATQYDHQGIGRELNELNAEHAEAKSGRPLPERSLFTLTGKAG---LTTEQRLSVVDAKSKPELGRLLRDIEASAPKGLTIEAFQVRVMPRSGGVGMPAHRVSIHLSLDRFVYTIHTAPTTTPPNFFCKLLSALDAKPARGLYEEEVRNITKDHGRVVVQGPSSRGEETRVVHGVTGGDGGSITTVVDFRTSRVDGGPVTEEDRDTARRSVVALATRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEANDAMVPDGNG 924
            +DDE G    GG ++K PWA++LKK IT DT ++  L  HLSDL  G+A +YDH+ IG+ELNEL AE+AE KSG PL ERSLFTLTGKAG   LTTE RLS+  A+SKPELGR + DIE SAP GL  E  QVR+MPRS GVGM AHR  I LS DR V+TIHT  T  P  FFCKL+S  DA+P RG YE+E RNI K +G V+VQGP +RGEETRVVHGVTGG GG+IT ++D+ TSR+D  PVTE DRD AR+SVV    R P  P  VANTYA+T  FP DAPR++GSRR TEAN+AMVP+G G
Sbjct:   53 EDDEPGSTCRGGKRQKLPWAKRLKKAITYDTDIKIDLGGHLSDLVQGVAIEYDHRKIGQELNELGAEYAEGKSGHPLEERSLFTLTGKAGKAGLTTEHRLSIAAARSKPELGRFIADIERSAPAGLKNETVQVRMMPRSTGVGMTAHRDGIALSYDRVVFTIHTEYTAAPAQFFCKLMSTADARPDRGPYEKEQRNIQKVNGLVLVQGPKARGEETRVVHGVTGGGGGAITAILDYATSRIDESPVTEADRDHARKSVVTSLARDPDPPRPVANTYANTCEFPADAPRSSGSRRGTEANNAMVPNGRG 360
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BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Match: A0A6H5KK46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK46_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 7.100e-120
Identity = 195/308 (63.31%), Postives = 229/308 (74.35%), Query Frame = 1 
Query:   10 DDDEQGCKRTGGGQRKTPWAEKLKKPITVDTKLEKRLDYHLSDLETGLATQYDHQGIGRELNELNAEHAEAKSGRPLPERSLFTLTGKAG---LTTEQRLSVVDAKSKPELGRLLRDIEASAPKGLTIEAFQVRVMPRSGGVGMPAHRVSIHLSLDRFVYTIHTAPTTTPPNFFCKLLSALDAKPARGLYEEEVRNITKDHGRVVVQGPSSRGEETRVVHGVTGGDGGSITTVVDFRTSRVDGGPVTEEDRDTARRSVVALATRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEANDAMVPDGNG 924
            +DDE G    GG ++K PWA++LKK IT DT ++  L  HLSDL  G+A +YDH+ IG+ELNEL AE+AE KSG PL ERSLFTLTGKAG   LTTE RLS+  A+SKPELGR + DIE SAP GL  E  QVR+MPRS GVGM AHR  I LS DR V+TIHT  T  P  FFCKL+S  DA+P RG YE+E RNI K +G V+VQGP +RGEETRVVHGVTGG GG+IT ++D+ TSR+D  PVTE DRD AR+SVV    R P  P  VANTYA+T  FP DAPR++GSRR TEAN+AMVP+G G
Sbjct:   13 EDDEPGSTCRGGKRQKLPWAKRLKKAITYDTDIKIDLGGHLSDLVQGVAIEYDHRKIGQELNELGAEYAEGKSGHPLEERSLFTLTGKAGKAGLTTEHRLSIAAARSKPELGRFIADIERSAPAGLKNETVQVRMMPRSTGVGMTAHRDGIALSYDRVVFTIHTEYTAAPAQFFCKLMSTADARPDRGPYEKEQRNIQKVNGLVLVQGPKARGEETRVVHGVTGGGGGAITAILDYATSRIDESPVTEADRDHARKSVVTSLARDPDPPRPVANTYANTCEFPADAPRSSGSRRGTEANNAMVPNGRG 320
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BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.240e-32
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 1 
Query:  508 PPNFFCKLLSALDAKPARGLYEEEVRNITKDHGRVVVQGPSSRGEETRVVHGVTGGDGGSITTVVDFRTSRVDGGPVTEEDRDTARRSVVALATRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEANDAMV 909
            PP FF KL+   DA+PARG YE     + K HG +VV+GP++RGE+ R VHGV  G+  S+T V D+ T+R DG   ++EDRD+AR+SVVA  TR    PG+  + YAD  V+P +APRTTGSR+ATEAN+AMV
Sbjct:   75 PPEFFVKLMKGPDAEPARGPYELGEIVVPKVHGLIVVKGPNARGEKVRAVHGVRPGNVTSLTLVADYITTRNDGQATSDEDRDSARKSVVAHTTRAA-PPGATIDPYADRLVWPENAPRTTGSRKATEANNAMV 207
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BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.280e-23
Identity = 72/162 (44.44%), Postives = 93/162 (57.41%), Query Frame = 1 
Query:  430 MPAHRVSIHLSLDRFVYTIHTAPTTTPPNFFCKLLSALDAKPARGLYEEEVRNITKDHGRVVVQGPSSRGEETRVVHGVTG-GDGGSITTVVDF-RTSRVDGGPVTEEDRDTARRSVVALATRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEANDAMV 909
            MP HR +I+L  DR ++T  T P+   P FF +L    DA PA G YE          G +V       GEE R V GV   G   S T   D+  T+R D  PV+++DRD+AR+ VVA  T+ P  PG+  + YAD  V+P +APRT GSRRATEAN+A+V
Sbjct:    1 MPPHRDNINLQYDRTIFTWLTGPSPNAPEFFIELTPGPDATPACGPYEP---------GEIV-------GEEVRAVDGVRPRGVASSFTLGADYITTTRNDQQPVSDKDRDSARKLVVAHTTK-PAPPGASISPYADRLVWPENAPRTPGSRRATEANNALV 145
[Close]
BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-14
Identity = 60/146 (41.10%), Postives = 81/146 (55.48%), Query Frame = 1 
Query:  499 TTTPPNFFCKLLSALDAKPARGLYEEEVRNITKDHGRVVVQGPSSRGEETRVVHGVTGGDGGSITTVVDFRTSRVDGGPVTEEDRDTARRSVVALA-TRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEANDAMVPDGN-GAW 930
            T  PP F  KL+S   A PA G Y  +  +I K++GR++V+GP +RGE+                      T+RVD        RD+AR+SVV  A +R P + G+  N +AD+ V    APRTTGSR+ATEAN+AM  DG+ G W
Sbjct:  259 TNKPPEFHVKLMSGPKAAPATGPYGPDEWHIPKENGRMIVKGPMARGEQA---------------------TTRVD--------RDSARQSVVDRAESRMPPI-GAPHNPFADSLVLSDTAPRTTGSRKATEANNAMAWDGSAGNW 374
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.199.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCN5_9PHAE5.900e-12063.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK46_9PHAE7.100e-12063.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP9_ECTSI3.240e-3254.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRU8_9PHAE4.280e-2344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI2.000e-1441.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:804290..806802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1157
Hectar predicted targeting categoryother localisation
Exons4
Cds size1155
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789511.917426-CDS-P-littoralis_Contig12:804289..8052401680789511.917426-CDS-P-littoralis_Contig12:804289..805240Pylaiella littoralis U1_48CDSP-littoralis_Contig12 804290..805240 +
1680789511.9263222-CDS-P-littoralis_Contig12:805525..8056511680789511.9263222-CDS-P-littoralis_Contig12:805525..805651Pylaiella littoralis U1_48CDSP-littoralis_Contig12 805526..805651 +
1680789511.9348497-CDS-P-littoralis_Contig12:806345..8063571680789511.9348497-CDS-P-littoralis_Contig12:806345..806357Pylaiella littoralis U1_48CDSP-littoralis_Contig12 806346..806357 +
1680789511.9431176-CDS-P-littoralis_Contig12:806736..8068021680789511.9431176-CDS-P-littoralis_Contig12:806736..806802Pylaiella littoralis U1_48CDSP-littoralis_Contig12 806737..806802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.199.2prot_P-littoralis_Contig12.199.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 804290..806802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.199.2

>prot_P-littoralis_Contig12.199.2 ID=prot_P-littoralis_Contig12.199.2|Name=mRNA_P-littoralis_Contig12.199.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=385bp
MEDDDDEQGCKRTGGGQRKTPWAEKLKKPITVDTKLEKRLDYHLSDLETG
LATQYDHQGIGRELNELNAEHAEAKSGRPLPERSLFTLTGKAGLTTEQRL
SVVDAKSKPELGRLLRDIEASAPKGLTIEAFQVRVMPRSGGVGMPAHRVS
IHLSLDRFVYTIHTAPTTTPPNFFCKLLSALDAKPARGLYEEEVRNITKD
HGRVVVQGPSSRGEETRVVHGVTGGDGGSITTVVDFRTSRVDGGPVTEED
RDTARRSVVALATRTPYLPGSVANTYADTFVFPTDAPRTTGSRRATEAND
AMVPDGNGAWRRGPHKKRGRQPCAARRSRYPRPRGREELPRHPSRERPWI
RPRPTDLAEGKSEARRPSRNARRNPRRSRTTARAE
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mRNA from alignment at P-littoralis_Contig12:804290..806802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.199.2 ID=mRNA_P-littoralis_Contig12.199.2|Name=mRNA_P-littoralis_Contig12.199.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2513bp|location=Sequence derived from alignment at P-littoralis_Contig12:804290..806802+ (Pylaiella littoralis U1_48)
ATGGAGGATGATGACGACGAGCAGGGATGCAAACGTACGGGTGGTGGACA
GCGAAAAACCCCGTGGGCGGAGAAACTCAAGAAGCCGATCACCGTCGACA
CGAAGTTGGAGAAGCGACTCGATTATCACCTTTCTGACTTGGAGACGGGT
CTTGCTACCCAGTACGACCACCAGGGAATAGGTAGGGAGTTGAACGAGCT
CAACGCCGAGCACGCGGAAGCAAAGAGCGGTCGTCCCCTCCCTGAGAGAT
CCCTCTTCACGCTCACGGGCAAGGCAGGGCTAACGACAGAGCAGCGTCTC
TCGGTGGTCGACGCGAAATCGAAGCCGGAGTTGGGACGTTTGCTGCGCGA
CATCGAGGCCTCTGCCCCCAAGGGCTTGACGATCGAAGCGTTTCAGGTCC
GTGTGATGCCGAGATCCGGAGGTGTTGGTATGCCCGCCCACCGAGTCAGT
ATCCACCTGAGCTTGGACAGGTTCGTATATACGATCCACACGGCGCCCAC
TACAACCCCCCCAAACTTCTTCTGCAAGCTCTTGTCGGCATTAGACGCCA
AACCTGCCCGGGGTCTGTACGAGGAAGAAGTGCGAAACATTACAAAAGAC
CACGGGCGTGTGGTGGTCCAAGGTCCGAGCTCTCGGGGTGAGGAGACCAG
AGTCGTTCACGGCGTCACGGGCGGGGATGGAGGGTCGATCACCACTGTAG
TGGACTTTCGGACATCTCGAGTCGACGGGGGTCCTGTAACTGAGGAGGAC
CGCGATACTGCTCGGAGATCAGTAGTGGCGCTAGCCACCCGCACGCCATA
TCTGCCTGGAAGTGTTGCCAACACCTACGCCGACACTTTTGTCTTCCCGA
CGGACGCCCCGCGCACAACTGGCTCACGCAGGGCAACAGAGGCGAACGAC
GCTATGGTACCGGACGGAAACGGGGCATGGAGAAGAGGGCCTCACAAAAA
GGTTAGGGAGTGATGTTTGTTGTTGTTGTTGGTTTTAATGATGGTGACTA
TGACCAAGGATCCTGATTCTTAAATCATACCATTCACACGACTGACTGAC
GAACATCTCCCCCCGTATGTGCCCGCATGTGTTGTCCATGTTTTCTTGTG
CGATGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTG
TTGTTGTTGTTGTTGCTGCTGCTGCTGCGTGAATTGACGACGACTAGTAC
GCATTTTCCCCATGATCGATTTTCTGGTTTTGGCAGCGCGGACGTCAACC
GTGCGCGGCCAGAAGGTCACGGTATCCGAGACCGCGTGGGAGGGAAGAGC
TGCCCCGACACCCCTCGAGAGAGAGGCCATGGATCAGACCTCGGCCGACA
GATCTCGCGGAGGCAAGCTGTTGTTGTTGTTGTCGTTGTTGTTGTCGTTG
TTGTTGTTGTTGTTGTTTTTAGCGGATGCCCAACGACTGAACGCGTCTGT
CTCCGGCGAGTGCCTGAAATGTTACCATGTATTGACAGGTCGAACGCAAC
TATTGTCAACGCGCGCAGCTGGTGCATTGTTGTTGTTGTTGTTGTTGTTG
CGGCGAGAGATGTTACTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTT
GTTGCTTGTCCCCCACGTCCACCCGCCCCTCTGGAGGTACATGTACCCGA
CGCAAGCACCACACAGCCGCTACCGTGCCACCGACGCGTCCCTCGAACAA
GAGTAAATAGTACTCCTATTTGTTTGTGTACTGCTCAACAAAGACGAACG
CCAACCAATTTGTCGCTCAGAATTTTCGACTGTTGTTGTTTTTGTTGTTG
TTGTTGTTTTTGTTGTTGGGATGTTACATGTATCCGACGCAAACACCACC
CAGCCGCTCCCGTGCCATCGACGCGCCCGTAGAAGAAGATTGAATAGTAT
TTGTTGTGTACTGCTCAACATGGACGAACGCCAACGAATGTGTGCTCATA
AATTTCTGATTGTTTCCTGAAACCGACCCTTTCCAATCCCCATGTCTACT
TGGTGCTATCGCTTCCCGGCTTTCACTCGTCGTCGCATGGATCTCGGGTA
CGCCAGGGGAAATCGGAGGTAAGACGAATCTGGACGTTCATACCGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTATTCTGAATGAATTCAATGAAT
GAAATTGTGCTTGTGTGTTGGCATGTGTCTGATTTCCCATTCGTTGGCAC
AGCCGCCCCCTTTCTGGCCGAAAAACATGGTTCTTTGAAAGCTGACATTT
CCGCGTCGGTGTTCGTGCGAATAGCTCAGGCCAGGAGGTATCACTCCTCC
CTACCATGCTCACAGCGATTGAATCACGCGAATATTTCCTCGCGTATGCT
CGTCATTTTTAGTGAAATTACTCCCCCGCATGTTGTGTTCGTTCTAGGCG
AGAAGGCCATCAAGAAACGCAAGGAGAAACCCGAGACGTTCAAGGACGAC
TGCTCGCGCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:804290..806802+

>mRNA_P-littoralis_Contig12.199.2 ID=mRNA_P-littoralis_Contig12.199.2|Name=mRNA_P-littoralis_Contig12.199.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1155bp|location=Sequence derived from alignment at P-littoralis_Contig12:804290..806802+ (Pylaiella littoralis U1_48)
ATGGAGGATGATGACGACGAGCAGGGATGCAAACGTACGGGTGGTGGACA
GCGAAAAACCCCGTGGGCGGAGAAACTCAAGAAGCCGATCACCGTCGACA
CGAAGTTGGAGAAGCGACTCGATTATCACCTTTCTGACTTGGAGACGGGT
CTTGCTACCCAGTACGACCACCAGGGAATAGGTAGGGAGTTGAACGAGCT
CAACGCCGAGCACGCGGAAGCAAAGAGCGGTCGTCCCCTCCCTGAGAGAT
CCCTCTTCACGCTCACGGGCAAGGCAGGGCTAACGACAGAGCAGCGTCTC
TCGGTGGTCGACGCGAAATCGAAGCCGGAGTTGGGACGTTTGCTGCGCGA
CATCGAGGCCTCTGCCCCCAAGGGCTTGACGATCGAAGCGTTTCAGGTCC
GTGTGATGCCGAGATCCGGAGGTGTTGGTATGCCCGCCCACCGAGTCAGT
ATCCACCTGAGCTTGGACAGGTTCGTATATACGATCCACACGGCGCCCAC
TACAACCCCCCCAAACTTCTTCTGCAAGCTCTTGTCGGCATTAGACGCCA
AACCTGCCCGGGGTCTGTACGAGGAAGAAGTGCGAAACATTACAAAAGAC
CACGGGCGTGTGGTGGTCCAAGGTCCGAGCTCTCGGGGTGAGGAGACCAG
AGTCGTTCACGGCGTCACGGGCGGGGATGGAGGGTCGATCACCACTGTAG
TGGACTTTCGGACATCTCGAGTCGACGGGGGTCCTGTAACTGAGGAGGAC
CGCGATACTGCTCGGAGATCAGTAGTGGCGCTAGCCACCCGCACGCCATA
TCTGCCTGGAAGTGTTGCCAACACCTACGCCGACACTTTTGTCTTCCCGA
CGGACGCCCCGCGCACAACTGGCTCACGCAGGGCAACAGAGGCGAACGAC
GCTATGGTACCGGACGGAAACGGGGCATGGAGAAGAGGGCCTCACAAAAA
GCGCGGACGTCAACCGTGCGCGGCCAGAAGGTCACGGTATCCGAGACCGC
GTGGGAGGGAAGAGCTGCCCCGACACCCCTCGAGAGAGAGGCCATGGATC
AGACCTCGGCCGACAGATCTCGCGGAGGGGAAATCGGAGGCGAGAAGGCC
ATCAAGAAACGCAAGGAGAAACCCGAGACGTTCAAGGACGACTGCTCGCG
CGGAG
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