mRNA_P-littoralis_Contig836.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig836.2.1
Unique NamemRNA_P-littoralis_Contig836.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig836contigP-littoralis_Contig836:4107..7428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.0926661-CDS-P-littoralis_Contig836:4106..41941680791699.0926661-CDS-P-littoralis_Contig836:4106..4194Pylaiella littoralis U1_48CDSP-littoralis_Contig836 4107..4194 +
1680791699.1099358-CDS-P-littoralis_Contig836:7190..73601680791699.1099358-CDS-P-littoralis_Contig836:7190..7360Pylaiella littoralis U1_48CDSP-littoralis_Contig836 7191..7360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.1231956-UTR-P-littoralis_Contig836:7360..74281680791699.1231956-UTR-P-littoralis_Contig836:7360..7428Pylaiella littoralis U1_48UTRP-littoralis_Contig836 7361..7428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig836.2.1prot_P-littoralis_Contig836.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig836 4107..7360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig836.2.1

>prot_P-littoralis_Contig836.2.1 ID=prot_P-littoralis_Contig836.2.1|Name=mRNA_P-littoralis_Contig836.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
ERRCFCRVPRRQPSPRLALPRQQRRHISRVATQARRRSRRHARRGRLLYV
IHHAHSPGRSHSDGNGFEPPRREEGRAGQSYGGGV*
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mRNA from alignment at P-littoralis_Contig836:4107..7428+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig836.2.1 ID=mRNA_P-littoralis_Contig836.2.1|Name=mRNA_P-littoralis_Contig836.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3322bp|location=Sequence derived from alignment at P-littoralis_Contig836:4107..7428+ (Pylaiella littoralis U1_48)
GAGCGAAGGTGTTTCTGCCGGGTCCCCCGGCGCCAGCCGTCGCCGCGCCT
GGCTCTTCCGCGCCAGCAGCGGCGACATATCTCGCGAGGTGAATTTTGGG
TGCTTGCATTTTATCTCCATCCACCGCTGTGCATTTGTTCGGGCTTCGGC
CTTAAATCTATGGGGGTATACTAGGTTCCATATATTCTCTGTCACCTTTC
TGCTTTCCATCGTTCTCGGATGCCAGCAATATTTTGGTTCGGAGTAATTC
GGTACTGGAAAAGAGGGATCGGTTTCTGTACTCTTGATCATAAATGCTGT
TTCACCGACTGCCTGTACAGTACAGCAGTACCGGCTACACCGCCGTGCTT
ATATTGATATGGTACGTTACTGCCATGAGCAGTTGCGTCGTATACTCCGG
AACTGCTGTTCCTGACATCAGGGGTGGATTCGTACACTCAAACTGAGTAG
TGAGTATGCTACTGCGATACTGCTGTAGACCGAGCCGCCATACGATTGTA
CAAGCGTCCCTGCCTGCTGTAACCACGCTGCGGTACCGGGAGTGCGTATC
GGACGACCCGCTATTGACAAATACCTGGTAGTGATAATGCGTGCTATATA
CGACCGACCGGGTTCGATCCCCTTAAATACCTGCGTCTACGGCGGGGTTC
GATTTCATCACTTACGGAAGGATGCTTTATTCTGTTTCATTTTATTTTCG
GTTCTATCATACCTGAAATGCTGTCATGTACGATACCGACATTAGGAATA
CTCCGGAACCGGGTAATGAGTAGGCTGCTGTACCCAGACACCCTGACGAC
TGCTGTTGACACTTTATTTTATTTTATTTCACCTCACTGTGTACGATACT
GCTGATGATACTCGATCCTTATTTTCCGTTCTACCTCATTCTGTACGATA
CTGACATCAGTGGCTGGTTGCTTCGTATGCTCCGGAACCGGAAATGAGTA
GGTAGGCTACTGCTGTACACACACACCATAACCATGCTGCGGTAGACCGG
GCCGCAATACTGTACAACCGCCCAGGCCCGCGGTAACCAGGCCGCGGTAC
CGGGAACCACCGTAGGGCGTATACGAGTATTAGGTTCCGTTATGGACGCA
TAGTTATTATACATTTACGTCTGGGTACGATCCCCTACACCTTTAAAACT
ACGGCGGGGGGGGGGCTCGATGCCCCGCTTACGGAGGGCACTTTATGTTT
AAATTTTATTTTTCTATGTTTCTATTTTGACGAATATGTTCGAACGGGTT
CGATCCCTTAATTTACGGACGGGTTCGATCCCTTCATTTACGGACGGGTT
CGATCCCCACTACACGATTTGGGTTCGATCCCCTCGGGCACGAACGAGTT
CGACCCCCTCCGAACAGGTTCGATCTCCACTACGCAATTGGGTTCGATCC
CCTCGGATACGAAGGGGTTCGACCCCCCCTAATTTTCAGACAGGTTCGAT
CCCCACTACGGCTCGATGCCCCGCTTACGGAGGGCACTTTATGTTTAATT
TTTATTTTTCTATGTTTCTATTTTGACGAATATGTTCGAACGGGTTCGAT
CCCTTAATTTACGGACGGGTTCGATCCCCACTACACGATTTGGGTTCGAC
CCCCTCGGGCACGAACGAGCTCGACCCCCTACGAACAGGTTCGATCTCCA
CTACGCAATTGGGTTCGATCCCCTCGGATACGAAGGGGTTCGACCCCCCC
TAATTTTCAGACAGGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCT
CGTATCCGGACGGGTTCGACCCCCTGGTTTGGTTTGGTCCTAATTTTTGG
ACAGGCTCGATCCCCACTACGCAATTGGGTTCGATCCCCTCGTATCCAAC
AGGTTCGACCCCTGGTTTTCGGACGGGTTCGATCCCCACTACGCAATCGG
GTTCGATCCCCTCATATACTTTTACTGGCGGGTTCGATCCCCACTACGCA
ATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGACCCCCACT
GGTTTTCGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTTCGATCCC
CACTACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCG
ATCCAAACTACGCAATTGGGTTCGACCCCCTCATATACTCTTACGGACGG
GTTCGATCCCCACTACGCAATCGGGTTCGATCCCCTCATATACTTTTACG
GACGGGTTCGATCCAAACTACGCAATTGGGTTCGACCCCCTCATATACTT
TTACGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTTCGATCCCCAC
TACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGATC
CATACTACGCAATCGGGTTCGATCCCCTCATACACTTTTACGGACGGGTT
CGATCCCCACTGGTTTTCGGACGGGTTCGATCCCCACTGCGCAATGGGGT
TCGATCCCCTCATATACTTTTACGGACGGGTTCGATCCCCACTAAACGCG
TGGGTTCGATCCCCTACTACTGTACAAACGGGTTCGATCCCCTTGCGGTA
CGATCGGGTTCGATCCCCTCATACTTCGTAAACCTTTACGGACGGATTCG
ATCCTCACTTATCGCGTGGGTTCGATCCCCAACTGCTGTACGAACGGGTC
GATCCCCTTGCGGTACGATTGGGTTCGACCCCCTGTGGCACGGTTCGACC
CCGTGGGGCTTTTGCCGGCAAATCAAGAATGTTATCTTTGCTTTGTCTTT
CCGATCCCCGTGGAGCTCTGCAGGAAAAATCAGGAATCTTATTTATTTGA
TTCTATTTCACTTTCTTTCGCGGCTGTGGTACGGTCCGATCCCCTTGCGA
GTTTCTGCGTGAAGTTCCCTGAGCGCGCCATGCGACGTGGGGCTCTGCAG
GAAAAATCAGGAATCTTGATTTATTTTATTCTATTTCACTTTCTTTCGCG
GCTGCGGTACGGTTCGATCCCCTTGCGAGTTTCTGCGTGAAGTCCCCTGA
GCGCGCCATGCGACGAACGAGTTTCATATTAACGTGGCCGACCGATTTAT
TTGCTTTCATTTCCGACGGTGCGATCGATTGCAGTTGCGACTCAAGCTCG
ACGGCGTTCTCGGCGTCATGCGCGACGCGGACGGTTGCTATACGTGATTC
ACCATGCGCACTCACCTGGACGTAGCCATTCGGATGGCAACGGATTTGAA
CCTCCTCGACGCGAGGAAGGTCGCGCGGGGCAATCGTATGGTGGCGGCGT
GTAACGATCCGGTTCTCGTCCTTGGCGTCTTCTCCAAGATGCTGCCGTCG
GTCCACGGCGTCTCGCAAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig836:4107..7428+

>mRNA_P-littoralis_Contig836.2.1 ID=mRNA_P-littoralis_Contig836.2.1|Name=mRNA_P-littoralis_Contig836.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig836:4107..7428+ (Pylaiella littoralis U1_48)
GAGCGAAGGTGTTTCTGCCGGGTCCCCCGGCGCCAGCCGTCGCCGCGCCT
GGCTCTTCCGCGCCAGCAGCGGCGACATATCTCGCGAGTTGCGACTCAAG
CTCGACGGCGTTCTCGGCGTCATGCGCGACGCGGACGGTTGCTATACGTG
ATTCACCATGCGCACTCACCTGGACGTAGCCATTCGGATGGCAACGGATT
TGAACCTCCTCGACGCGAGGAAGGTCGCGCGGGGCAATCGTATGGTGGCG
GCGTGTAA
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