mRNA_P-littoralis_Contig835.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig835.19.1
Unique NamemRNA_P-littoralis_Contig835.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig835.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig835contigP-littoralis_Contig835:86905..88330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.8721912-CDS-P-littoralis_Contig835:86905..869771680791698.8721912-CDS-P-littoralis_Contig835:86905..86977Pylaiella littoralis U1_48CDSP-littoralis_Contig835 86906..86977 -
1680791698.882339-CDS-P-littoralis_Contig835:88123..883301680791698.882339-CDS-P-littoralis_Contig835:88123..88330Pylaiella littoralis U1_48CDSP-littoralis_Contig835 88124..88330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig835.19.1prot_P-littoralis_Contig835.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig835 86906..88330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig835.19.1

>prot_P-littoralis_Contig835.19.1 ID=prot_P-littoralis_Contig835.19.1|Name=mRNA_P-littoralis_Contig835.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
SSCLLPVCFERDACCVGMLTRLPRCEVLYYGFHAIFRLHSAVTLQLRLLQ
LLGRRAAEEDEKAQGCRRHAAVPGAAIASSIVSNEEVQPKGSG
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mRNA from alignment at P-littoralis_Contig835:86905..88330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig835.19.1 ID=mRNA_P-littoralis_Contig835.19.1|Name=mRNA_P-littoralis_Contig835.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1426bp|location=Sequence derived from alignment at P-littoralis_Contig835:86905..88330- (Pylaiella littoralis U1_48)
TCCTCTTGCCTGTTGCCGGTTTGTTTTGAACGAGACGCATGTTGTGTGGG
TATGTTGACCCGATTACCTCGATGTGAAGTACTGTATTATGGGTTTCACG
CCATATTCAGGTTGCACAGCGCTGTCACCCTACAGCTGAGGCTTCTTCAA
CTCCTCGGGCGACGAGCGGCAGAAGAAGATGAGAAGGCCCAAGGCTGTAG
GCGGCATGTAAGCGATCTTTGACGCGCTGTGACTACTGCCTCAAAATTTT
TTGTGGTGATGGTTGTAAATAATAGTCCAGGTGAGAAGTACAACGCTCCA
CTTGACTTGTGACCATGCGACATTTAAATGTACGGCGGTGCACAGCACCG
GTGGTCGCGTCGTTCGGCGTCGTTTTGTGTTTGTTTCTGCGCTCACAGAA
ATGGTGATACTCTGTACTGGTAGTTGTTTATGAAAATTGCGGTGTTTCTG
TGCAGTATGCAACTCGCGATAAGCGACGACTGGAATTACTGGCCATACTT
GAGCAAGCGCCACTAAAATGCTGCTTGGTAGTTGCTATCCTAGGGTGGCG
TGTACTAACTATTGGGATGAACACGTCCGATGATATGCAAGTCTTCTGGC
CAACTAGTGGAAACATTCCCGCAACCATAACTCAAATCTGCGATAATAAA
TGGCATCTTGCGCATGTGATTTGCTGCGAGAATGGCAGTTGGGGGTACAA
CATGTCTATGTACCCTACGAAATACTTTTTACTCGCGAGGTCACGTTGAA
AGGCTTTTCTCTGCCGCAAAATCTCTTCTTGGCGTAGTAGTGGGGCTCAG
TGCTTGCCGGGACAAAACAATCGCTTCCCAAGTACTTTAGACAAAATGGG
TGCCATGTCATGCTTGAAAGAAATGCACAACCACCGCTTCCTCCTCAACC
CCGGCGCATGCTGTCCTTCCTTACTATCATCACTAGAACAACAAAGGATT
AAATATAGCCCTTGTTTTCAGCGAACCGTTTGCAATCGTGTTCACTTCTT
GTCTGGCATTTACAAGGGACGATATCTCTACCAATGCTGACGCCATATGA
TGACATACCGGTGCGTGCGATTCATGATACATACCACCAGACCACAGCAG
CAGCAGGCTGCCAGAAAACTGCAGCTCATTTTACTCTGCTGCAGCGAATG
GCGCCAGCCATTTCTGCGAAAAACACGGATTCCACTTTCAAGTCTGATGT
ATATGCCACTCATTCACAGGTTCGACACGCCTCTTTTGGGAAAATATGCT
TCAAATTTTTCACATGCTGGCTAATGGCCCTAACCGTTGCAACCCCAGCG
CATTATTTTCCCTTCCCGCTGCCACACACTACACCTCGGTCCCTACGCTT
CAGGCTGCTGTGCCTGGTGCTGCGATTGCCTCGTCGATCGTGAGCAACGA
GGAGGTTCAGCCGAAGGGAAGTGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig835:86905..88330-

>mRNA_P-littoralis_Contig835.19.1 ID=mRNA_P-littoralis_Contig835.19.1|Name=mRNA_P-littoralis_Contig835.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig835:86905..88330- (Pylaiella littoralis U1_48)
TCCTCTTGCCTGTTGCCGGTTTGTTTTGAACGAGACGCATGTTGTGTGGG
TATGTTGACCCGATTACCTCGATGTGAAGTACTGTATTATGGGTTTCACG
CCATATTCAGGTTGCACAGCGCTGTCACCCTACAGCTGAGGCTTCTTCAA
CTCCTCGGGCGACGAGCGGCAGAAGAAGATGAGAAGGCCCAAGGCTGTAG
GCGGCATGCTGCTGTGCCTGGTGCTGCGATTGCCTCGTCGATCGTGAGCA
ACGAGGAGGTTCAGCCGAAGGGAAGTGGC
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