mRNA_P-littoralis_Contig835.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig835.18.1
Unique NamemRNA_P-littoralis_Contig835.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig835.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig835contigP-littoralis_Contig835:84594..86475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons3
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.7979834-UTR-P-littoralis_Contig835:84593..850701680791698.7979834-UTR-P-littoralis_Contig835:84593..85070Pylaiella littoralis U1_48UTRP-littoralis_Contig835 84594..85070 -
1680791698.8430796-UTR-P-littoralis_Contig835:86361..864751680791698.8430796-UTR-P-littoralis_Contig835:86361..86475Pylaiella littoralis U1_48UTRP-littoralis_Contig835 86362..86475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.8096187-CDS-P-littoralis_Contig835:85070..852081680791698.8096187-CDS-P-littoralis_Contig835:85070..85208Pylaiella littoralis U1_48CDSP-littoralis_Contig835 85071..85208 -
1680791698.81983-CDS-P-littoralis_Contig835:85341..857161680791698.81983-CDS-P-littoralis_Contig835:85341..85716Pylaiella littoralis U1_48CDSP-littoralis_Contig835 85342..85716 -
1680791698.831753-CDS-P-littoralis_Contig835:86283..863611680791698.831753-CDS-P-littoralis_Contig835:86283..86361Pylaiella littoralis U1_48CDSP-littoralis_Contig835 86284..86361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig835.18.1prot_P-littoralis_Contig835.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig835 85071..86361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig835.18.1

>prot_P-littoralis_Contig835.18.1 ID=prot_P-littoralis_Contig835.18.1|Name=mRNA_P-littoralis_Contig835.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
MLARAPASVREVLEDAKDIHMAWRKKVKEAVELGSAKDSGNRNDDQNDAS
MPPSELPTGGGDRKRRKDSLSTDTPVAAAAAAGSQLPDSSAPHSPKGRAI
ARKPSKGLVATIPGRSYVRPGSSTQAAAAAAAKEVAGGGGSGGGGSSSSS
SSGLQVGKILPIDVRWKVDVEMVGIKKAQVGLMSSTGKSCRNAFVQ*
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mRNA from alignment at P-littoralis_Contig835:84594..86475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig835.18.1 ID=mRNA_P-littoralis_Contig835.18.1|Name=mRNA_P-littoralis_Contig835.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1882bp|location=Sequence derived from alignment at P-littoralis_Contig835:84594..86475- (Pylaiella littoralis U1_48)
CGGCGCAATCTATTTTCCGACACAACCAGAGGGCGATATCTGGCTCTGTC
ATTCTGCGCGGCAACGTCAATTCGAACATACCATCAGGATGATGTACCAG
CGGCGCTTGCCGCAATGTTGGCCCGCGCCCCCGCAAGCGTCAGGGAGGTT
CTGGAGGATGCGAAGGATATCCACATGGCCTGGCGGAAAAAGGTGAGGTT
CAAAGGCTTCAAACGACTATCAGCCTTGTTGTGAATGCCGGGGGTACTAC
TTCGGGTGCACCAGAGAGGTTTATCACTGTGAACTCGAGGATGAAAAATA
AACGAGAACCGCAATGTACACCGGCATCAAACCATTCCTAGCCCTGCGTC
TGCCAATGACATCTGAGAACGACTCTTGGCCATAAACGTTTGCCGATGGT
GCCTATCGATGCAATCATGGGGTAAACACAATTATTCCTGTGGTGAGCCG
TTTACTCTCTCGCTGTAGCGTTGATTTAGCCCCACCTTCCGGTTGAAAAC
CAGGTACCAGTATTTCGCACGTGAAAGGTCCGCAAAACCGCAATATCAGG
TATTTATGTTTCAAACACGGTAGTGCTTTCGTGGATTGTACGAGCAATAC
CTCTCGCAATTTGTTCCGCTTTTCTGAAAAAACTCTTTGCCTACAGCCCG
GTGTGGCCTGCCGAGTAGTGCCGGTGCGATTGCCAATTTTGTTTGTGATG
ACCAGCTTTTGTGTTGGGCCCGCGTTTTTTTTGTTCCGCGGTTGTTTTTG
CCCCCTCAGGTCAAGGAGGCAGTCGAGCTTGGCTCGGCGAAGGACTCCGG
AAACAGAAACGACGACCAAAACGACGCGTCAATGCCACCATCGGAGCTGC
CGACGGGTGGCGGCGACAGAAAGCGGCGCAAAGATAGCCTCTCGACCGAC
ACCCCCGTCGCCGCAGCCGCAGCGGCAGGCTCACAACTCCCGGACTCTTC
GGCGCCGCACTCACCGAAGGGCAGAGCGATAGCACGAAAGCCTTCAAAAG
GATTGGTGGCAACGATTCCCGGCCGTTCGTACGTTCGTCCCGGAAGTTCC
ACGCAAGCAGCGGCGGCAGCGGCTGCAAAGGAGGTTGCTGGCGGGGGTGG
CAGCGGCGGTGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTACCAGCAGCA
GTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCCGCGGTGGCGGCAG
AGGCCAGGTTCACACCGTCCCCAACCCCGACCGTCTGGCAAGTGGCCGTC
ATTCGGGGAAATTCCTTTCCGGTCTGCAGGTCGGGAAGATACTCCCGATC
GATGTGCGGTGGAAAGTGGATGTCGAGATGGTCGGCATCAAGAAAGCACA
GGTAGGATTGATGTCGTCTACAGGGAAATCGTGCCGGAACGCGTTTGTGC
AGTAGACCGCAACCTAGAGACTACCGGAGCGTTCATCGCGCCCCCCCCGG
TTTCGTTGGCATACACGTAAGGCTAGCGCGTTGTACTTTGCCCTGCATTC
CCTTGCGCTTACCTTGCGATGTTTTTTACCGCTCCTGAGACACCCACTGG
GCTCTATACAGGAACGCATTACGCTGTGAACAGCAGTAGTTTCCCGTCCG
GTTCGGTAATACGATATCTTTACGGTGGTACTCCGAAGAATTCAAGGGTC
TCGCCTCGACTCATGAAATTGACTTCCAGTCGATGCTTGACATAATACGT
TGCACACAAGTTGCCGTGGGTTGTCACTGTCCCCACCTGTTCGATTTAGG
CGTTGCGAGTTCGACGAATAATGTTTCCGAGCACTGCTGTGGTTGATATC
GTTTCGCGTCGCAAAAGGCTGGTTATCCTCGCCCAGTTTCCTCTCGCCTG
TGCGGCTAATGGCTGTCTACATGGCACATGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig835:84594..86475-

>mRNA_P-littoralis_Contig835.18.1 ID=mRNA_P-littoralis_Contig835.18.1|Name=mRNA_P-littoralis_Contig835.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig835:84594..86475- (Pylaiella littoralis U1_48)
ATGTTGGCCCGCGCCCCCGCAAGCGTCAGGGAGGTTCTGGAGGATGCGAA
GGATATCCACATGGCCTGGCGGAAAAAGGTCAAGGAGGCAGTCGAGCTTG
GCTCGGCGAAGGACTCCGGAAACAGAAACGACGACCAAAACGACGCGTCA
ATGCCACCATCGGAGCTGCCGACGGGTGGCGGCGACAGAAAGCGGCGCAA
AGATAGCCTCTCGACCGACACCCCCGTCGCCGCAGCCGCAGCGGCAGGCT
CACAACTCCCGGACTCTTCGGCGCCGCACTCACCGAAGGGCAGAGCGATA
GCACGAAAGCCTTCAAAAGGATTGGTGGCAACGATTCCCGGCCGTTCGTA
CGTTCGTCCCGGAAGTTCCACGCAAGCAGCGGCGGCAGCGGCTGCAAAGG
AGGTTGCTGGCGGGGGTGGCAGCGGCGGTGGCGGCAGCAGCAGCAGCAGC
AGCTCCGGTCTGCAGGTCGGGAAGATACTCCCGATCGATGTGCGGTGGAA
AGTGGATGTCGAGATGGTCGGCATCAAGAAAGCACAGGTAGGATTGATGT
CGTCTACAGGGAAATCGTGCCGGAACGCGTTTGTGCAGTAG
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