mRNA_P-littoralis_Contig835.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig835.9.1
Unique NamemRNA_P-littoralis_Contig835.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig835.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig835contigP-littoralis_Contig835:50473..52191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categorysignal peptide
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.7309186-UTR-P-littoralis_Contig835:50472..505041680791698.7309186-UTR-P-littoralis_Contig835:50472..50504Pylaiella littoralis U1_48UTRP-littoralis_Contig835 50473..50504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.7477362-CDS-P-littoralis_Contig835:50504..506581680791698.7477362-CDS-P-littoralis_Contig835:50504..50658Pylaiella littoralis U1_48CDSP-littoralis_Contig835 50505..50658 +
1680791698.7642267-CDS-P-littoralis_Contig835:52111..521911680791698.7642267-CDS-P-littoralis_Contig835:52111..52191Pylaiella littoralis U1_48CDSP-littoralis_Contig835 52112..52191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig835.9.1prot_P-littoralis_Contig835.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig835 50505..52191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig835.9.1

>prot_P-littoralis_Contig835.9.1 ID=prot_P-littoralis_Contig835.9.1|Name=mRNA_P-littoralis_Contig835.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MSWINAASIMLVGTLLARGVTLEMAFIGGRGAVPRCCISLQRCPWPGTPA
AGAYLQISPLGTTWVIAHQKMLTATAGT
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mRNA from alignment at P-littoralis_Contig835:50473..52191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig835.9.1 ID=mRNA_P-littoralis_Contig835.9.1|Name=mRNA_P-littoralis_Contig835.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1719bp|location=Sequence derived from alignment at P-littoralis_Contig835:50473..52191+ (Pylaiella littoralis U1_48)
ACAGAACACCGCAGCAGTAAGTATGCTGATCAATGTCATGGATAAACGCG
GCTTCGATCATGCTAGTTGGCACCTTGTTGGCAAGGGGGGTGACACTTGA
GATGGCCTTCATCGGCGGGCGGGGGGCAGTTCCGAGGTGCTGTATTAGCT
TGCAACGATGTCCGTGGCCAGGCACACCAGCAGCAGGTAGGTGGGTCCAT
GATATTATACTCAAGTATGATCAAACTAATTATGTCAACCGATATACGAA
GTAGTCTAATCGGTGACGACATATCTATGGTACACGCAGCTGCGCTTTCG
CTCGGTGGACTGAGTTATCATACACGCCACAGGGGTTTCGTGCTGCCGAG
CTTTTGTAGCGTGCTGTCTAGGTTCATCGGTGTTTCTGCTGTCGTATTAG
AGTCAATAAGGAGCACTTCGAAGTACTCCGTACATATGATTTTGGGACAT
CATCACATGTTCAATCCTGCTGCTGTACGTATCCATACAACTGTGCTAAC
TCACACAGCACCCACCGCCAAAGATAGCGCCCGAGAAAAAGGCACTGTAT
TTTGAGCATGGGGTACTACAGTAGGGGTTCCCTGTATGTGCATCGCCCGC
TAGACAAGCACAACACCGAGAGCTGCTGCTACTGCTACAAGGTTACCAGA
ATTGGAAAAATTGGCATCAACTCAGTTGACAGTCCCGTAAACTGTACAGG
TACTGCTGTATTTTTGTTCTTTCGGTTCGACGTGTGCCACACAGAACGAC
TCCCATTTTGCCTTGTTGAGCCTGATAACCTCAGGGGAGCAGCAACGAGA
TGCTGTACTTTCTAAACTTTACCTTCTTTTGTGCAGGAACATACCACAGG
GTCTGTCTGAGACGACAGATTGCTGCAGCAGTACAACAGTAGTTTGAATT
GTACGAAGTGTATTGTTAGACATCATAACCAATATTTGTGACTGTCTCTG
TGGGGGCTCTGTGACTCAGCAACCCACCTCGCTCGGCGGAATCCTCGTCT
AGTGCCTTTCGGGACCATCTCCCTGTGACACAGCAATCCACTACGGGCGG
AATCCCCGTTAAGCACCTTTCGGAACCCTCTCCCTGTGACACAGCAATCC
ACCTCGGCGGAATCCCCGTAAAGTACATTTCAGGACCCTCTCCCTGTGAC
ACAGCAATCCACCTCGGCCGAACTACCGGTTACTGCCTTACGGGACACCT
TCACTGTGACACAGCAATCCACCTCGGACGTATCCCCTTTTAGTTCCTTT
CGGGACACTTTCCCTGTAACACAGCAATCCACCTCTGTGGAATCCCCTTT
TAGTGCCTTTCGGGACACTTTCCCTGTTGTGACACAGCAATCAGTAGCCT
ACGCAGCGATGTTAAATTAACATATAGGATAAAGTATACTTTTGGCTAAG
TTTAGACGTCATATGATTGGCGAGCACCACCCAAACCAGCACGGATATGA
TTGGCGGGAATCACGAGACTGTGTGAGACCTGGCAGGGCATCCAGACTAG
GTATAATACATATTTCAAATTGATCCCAGTGATCGACAGCCACCATCACC
AAGACCAGACCAAACGTTCCTGTCAGAGCGGACGGGCTTTCCTCCGCCCA
ACCGGCCCAACCACACTCCACGTTCACTCCGCTGCTCAGGGGCGTACCTC
CAAATATCTCCCCTGGGGACAACATGGGTGATTGCCCACCAGAAGATGTT
GACAGCAACAGCGGGAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig835:50473..52191+

>mRNA_P-littoralis_Contig835.9.1 ID=mRNA_P-littoralis_Contig835.9.1|Name=mRNA_P-littoralis_Contig835.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig835:50473..52191+ (Pylaiella littoralis U1_48)
ATGTCATGGATAAACGCGGCTTCGATCATGCTAGTTGGCACCTTGTTGGC
AAGGGGGGTGACACTTGAGATGGCCTTCATCGGCGGGCGGGGGGCAGTTC
CGAGGTGCTGTATTAGCTTGCAACGATGTCCGTGGCCAGGCACACCAGCA
GCAGGGGCGTACCTCCAAATATCTCCCCTGGGGACAACATGGGTGATTGC
CCACCAGAAGATGTTGACAGCAACAGCGGGAACG
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