mRNA_P-littoralis_Contig834.3.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig834.3.2
Unique NamemRNA_P-littoralis_Contig834.3.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig834.3.2 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.290e-26
Identity = 60/139 (43.17%), Postives = 88/139 (63.31%), Query Frame = 1 
Query:  166 EMSPLVTTALTVLRNESNTEDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTAP 570
            +M+PL TTALT LR E   EDW++F  H++A++ K  TLGL+  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  180 QMNPLPTTALTPLRTEKGKEDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig834.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI3.290e-2643.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig834contigP-littoralis_Contig834:16299..19971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size607
Hectar predicted targeting categoryother localisation
Exons2
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.3657544-CDS-P-littoralis_Contig834:16298..167361680791698.3657544-CDS-P-littoralis_Contig834:16298..16736Pylaiella littoralis U1_48CDSP-littoralis_Contig834 16299..16736 -
1680791698.3831544-CDS-P-littoralis_Contig834:19803..199711680791698.3831544-CDS-P-littoralis_Contig834:19803..19971Pylaiella littoralis U1_48CDSP-littoralis_Contig834 19804..19971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig834.3.2prot_P-littoralis_Contig834.3.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig834 16299..19971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig834.3.2

>prot_P-littoralis_Contig834.3.2 ID=prot_P-littoralis_Contig834.3.2|Name=mRNA_P-littoralis_Contig834.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
AGAPAGASTEAGVDPLVARLQTLLAPPATEAAGAAALAPEDQRVVNYFSL
QHENFEMSPLVTTALTVLRNESNTEDWFTFSQHLNALVRKSFTLGLLNDR
ELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLR
DINKLHSASTAVSGAAHGYPGPSHLAAHHAARVAASSTAPQPRSRGSSVR
GG
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mRNA from alignment at P-littoralis_Contig834:16299..19971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig834.3.2 ID=mRNA_P-littoralis_Contig834.3.2|Name=mRNA_P-littoralis_Contig834.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3673bp|location=Sequence derived from alignment at P-littoralis_Contig834:16299..19971- (Pylaiella littoralis U1_48)
GCTGGAGCGCCTGCTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGT
CGCGCGCCTTCAGACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCG
CGGCCGCGTTGGCTCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTT
CAACATGAAAATTTCGAGGTGGGTTGGTGTTTTTCCTCCCTGATTCTGAA
TGGTGTTTTTTGCGAGATTGTTTACTGGTGTCTTCTTCTTTGTTTCAAGA
TTGATTGCTTCCTTGTTCTCACGATTGATTACTGCTGGCAAAAACAAAAT
CCTCTTGTGCTTTCTGTTTATTCATGCGTTCAGGGAAAGTTCAACATGGC
CCTTTTCTGCGATTTGCGATCTACAGATGCTCTGTTTTCGCATACCTCTG
TATGGATACCTACGTATACAGCTGAACTGCCACAACTGCAGCTGCCCGGT
ATATAGGTCTATACTCTATACTGCTGTATATAGCTGAACTATCTGTCTAT
ATACTGCTGTAGACTATATATCTATCTGCGGTGTATACCTGAACTATCTA
TACTGCTGTATATCGTTGAATTGATGAACTGCAGGTAAGCGGCAGTGCTG
GGTCATCTACCTATATATCTACTCAGTATACTGCTCTCCGTATACTGCCG
TGTATCGCTGAAATGCAGGTTCAGCTGCAGCTAGTTAAGACAGCTGCATG
CGGTGCCATCTATACATATACCCACGGCGGCAGGCCTATGCGGCGATATA
TATCTGCACTGCAAGGTCTATTCTGTTGTATTTTCTTCTGTTTATAGCTG
AACTGCAGGTTTGGCTGCACTACAGATCGGTTGTATAACACTGAACATCT
GTTGTATAACGCTGAACTGCAGGTTTAGCCCTGCAGATCTGTTGTATGTA
GCTGCACCGCAAGCTTAGACAGCGGCAGGCCGGGTCACTTACGGATATAC
CCACGGCGACAAGCCTATGCTGCTATATGATGCTGTTATATATAGCTGCA
CGGAAAGGTCAAACTGCGGTTTAGTCTATAGCTGTTCTGCGGTATATAAT
GTTAATGCGATTCCACGGCTGTGGCATCTACCTATATATATATATATCTA
GGCTATATATCTATAGGTCCTCTACCTATATATCTATACTGCTGCATATG
CTGAACTGCCGGTATAGCCACATATATACACGGCCGCAAGCCTATGCTGC
TATCTATAGTTCACTGCAGGTCTCTATTGCTTTACATAGCTGTACTGCCG
TATATAATGGGTATGTTTTTACCCACTTGCCGCAGTTTTTCGTATGGGAT
GCCTTTCCCTTATTTCCCACTGGCCGCAGTCATCGTATGCAATACGTTTC
TCTTTTGCCGCAGCCACTGTATGAGATGTCCTTTCCCGCGTTAGCCACCG
CTACCCCACCTTAAGCCGCAGCTATCGAATATTCATTTCGCCGCAGCCAT
CGTCCTACGAGTTGTGTCTTCCACTTTAGCCGCCGCGGCAGTATCGTATT
GTCATTTCGCCGCAGCCACCAAATGAGGTGTAATCCGCCCCCCCCTGCAG
CAGCCAACGTCTAATGGTTTCCTACCAGATTGCGTTTCGCCATTTGCCGC
AGCCATCATCTGAGATGTGTTTCCTGGCGTTTCTTCTCGCCGCAACCATC
ATGTGAGGTGTGCTTCCTTGCTTTTCGCCGCAGCCGTCATATGAGATGTG
TTTTCCCCTTGAGCCGCAGTCATCGTATGAGATGATTTTCCGCGTTACTT
TCGCCGCAGCCATCGTATTGATGTGTTTTCCGTTTTCGCCGCAGCCATCG
TATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGAGGTGCTT
TTCTGCTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCG
CAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGA
GATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACAT
TTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCA
TCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTG
CTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGC
CGCAGCCATCGTATGAGATGTGCTTTACGCAGCCATCGTATGAGATGTGC
TTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCC
GCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATG
AGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACA
TTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCC
ATCGTATGAGATGTGCTTTTCATTTTTTTCGCCGCAGCCATCGTATGAGA
TGTGCTTTACATTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTT
CGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCG
TATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTT
TACATTTTCGCCGTATGAGATGTGCTTTGCATTTTCGCCGCAGCCATCGT
ATGAGATGTGCTTTACATTTTCGCCGCCGCCATCGTATGAGATGTGCTTT
ACATTTTCGCCGCAGCCATCGTATGTGATGTGCTTTACATTTTCGCCGCA
GCCGTCGTATGAGATGTGCTTTACAATTTCGCCGCAGCCATCGTATGAGA
TGTGCTTTACATTTTCGCCGCAGCCGTCATATGAGAGGTTTTCTTTTCGC
CGCAGCCATCATATGAGATGTGCTTTTCTGCTTTCGCCGCAGCCATCCTA
TGAGGTGTATCATCGTTTCACGGCCGCATGATTTCGCCGTCTGCTATCAG
TTTCTCTCGCTGCAGCCATCATCTGCGATGTGCTCTTCCACCGCCATTCG
TTGATACGTGTTTCCTTGGGCCGCAGCTATCGAGGGGTCAGCATTCCACG
GTCGCAGGATTTCGCCGTCCGTTGTCAATACCAATTTGGACCACTTCCCT
CTCTCGCTGGTGGCCGCAGCCATGGAGGGGCCCGCGTTCCACCGTCGCAT
GATTTCGCCGTCTGTTGTCAATACCAATTTGGACCATTTCCCTCTCTCGC
TGGTTGCCGGTGTTTGTTTCCGCCGCGCGCTGCAGATGAGTCCGCTCGTC
ACCACGGCGCTCACCGTCCTTCGGAACGAGTCCAACACAGAAGATTGGTT
TACTTTCTCCCAACACCTGAACGCCCTCGTCAGGAAATCTTTTACACTTG
GCCTCCTCAACGATCGTGAACTCCTGGACCAACTCCAGTTTCGTGGAGAC
GATATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTTCTC
CGAGATGCTTCCGAACAAACGTCATGTCTCGCGGGAGACCACCTTTCGGG
ACCGCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACCGCA
GTGTCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGCTCA
CCACGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGAGTA
GGGGTTCGAGCGTTCGCGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig834:16299..19971-

>mRNA_P-littoralis_Contig834.3.2 ID=mRNA_P-littoralis_Contig834.3.2|Name=mRNA_P-littoralis_Contig834.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig834:16299..19971- (Pylaiella littoralis U1_48)
GCTGGAGCGCCTGCTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGT
CGCGCGCCTTCAGACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCG
CGGCCGCGTTGGCTCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTT
CAACATGAAAATTTCGAGATGAGTCCGCTCGTCACCACGGCGCTCACCGT
CCTTCGGAACGAGTCCAACACAGAAGATTGGTTTACTTTCTCCCAACACC
TGAACGCCCTCGTCAGGAAATCTTTTACACTTGGCCTCCTCAACGATCGT
GAACTCCTGGACCAACTCCAGTTTCGTGGAGACGATATGGTTGAACAAGG
AGGACACCCAGCCGCCGTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACA
AACGTCATGTCTCGCGGGAGACCACCTTTCGGGACCGCGGAAAACTCCGC
GACATCAACAAGCTCCACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCA
CGGATATCCTGGCCCGTCCCATTTAGCCGCTCACCACGCTGCACGTGTGG
CGGCGTCGTCCACCGCTCCACAGCCGCGGAGTAGGGGTTCGAGCGTTCGC
GGTGGG
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