mRNA_P-littoralis_Contig832.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig832.35.1
Unique NamemRNA_P-littoralis_Contig832.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.590e-20
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G AGNLC VDCSNRG CDY TGLCEC+TGYYG+NCG QSVLAK
Sbjct:  227 GRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 269
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A2R5GJ76_9STRA (Multiple epidermal growth factor-like domains protein 11 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ76_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-15
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLA 126
            G AGNLC VDCSNRG CDYETG C C+TGY G NC LQ VLA
Sbjct:  223 GSAGNLCHVDCSNRGICDYETGTCNCFTGYAGENCALQDVLA 264
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A7S2H126_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H126_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.300e-15
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLA 126
            G  GNLC VDCSNRG CDY +GLC C+TG+YG NCG  SVLA
Sbjct:  162 GTTGNLCHVDCSNRGLCDYASGLCHCFTGHYGENCGSMSVLA 203
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A7S4TA77_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA77_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.390e-14
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G  GN+C +DCSNRG CDY TG C C+ GYYG  C LQS LAK
Sbjct:   76 GQPGNICHIDCSNRGLCDYVTGRCTCFDGYYGEACHLQSALAK 118
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A5A8D842_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO)

HSP 1 Score: 72.8 bits (177), Expect = 4.060e-14
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G  GN C VDCSNRG CD  +GLC+C+ GYYG NCGL+S LAK
Sbjct:  249 GAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAK 291
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A812PH81_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PH81_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 7.190e-14
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G  GN C VDCSNRG CD  +GLC+C+ GYYG NCGL+S LAK
Sbjct:  375 GAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAK 417
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A835YN50_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.380e-14
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLA 126
            G  GNLC VDCS RG CDY TG+C+C+ GYYG NCG   VLA
Sbjct:  254 GAEGNLCHVDCSGRGVCDYATGVCQCFNGYYGQNCGTVDVLA 295
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.690e-13
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLA 126
            G+AGNLC VDC+NRG C+Y TG+C+C+ G+YG  C LQS LA
Sbjct:  237 GVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELA 278
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A7S2WUH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-12
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G  GNLC VDCS RG C++ TG C C+ GYYG+NCGL S +AK
Sbjct:  392 GQPGNLCHVDCSQRGICNHGTGTCACFEGYYGHNCGLVSAMAK 434
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BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Match: A0A6A3N5S9_9STRA (EGF-like domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5S9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.720e-12
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK 129
            G AGNLC V+CSNRG CDY+TG+C C+ GY GY+C     LAK
Sbjct:  755 GAAGNLCLVECSNRGVCDYKTGMCSCFQGYTGYDCQTPDSLAK 797
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig832.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV5_ECTSI6.590e-2083.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GJ76_9STRA1.100e-1576.19Multiple epidermal growth factor-like domains prot... [more]
A0A7S2H126_9STRA2.300e-1571.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4TA77_9STRA3.390e-1465.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A5A8D842_CAFRO4.060e-1467.44Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812PH81_9DINO7.190e-1467.44Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A835YN50_9STRA8.380e-1466.67EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S1CQ07_9STRA3.690e-1364.29Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2WUH0_9STRA1.250e-1262.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3N5S9_9STRA1.720e-1262.79EGF-like domain-containing protein n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig832contigP-littoralis_Contig832:106577..106708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYV5
PFAMsEGF_2
Model size132
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.08e-20
EggNOG OGs2A4YC@1|root,2RY8D@2759|Eukaryota
DescriptionEGF-like domain
Cds size132
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.0601628-CDS-P-littoralis_Contig832:106576..1067081680791698.0601628-CDS-P-littoralis_Contig832:106576..106708Pylaiella littoralis U1_48CDSP-littoralis_Contig832 106577..106708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig832.35.1prot_P-littoralis_Contig832.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig832 106577..106708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig832.35.1

>prot_P-littoralis_Contig832.35.1 ID=prot_P-littoralis_Contig832.35.1|Name=mRNA_P-littoralis_Contig832.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
GLAGNLCQVDCSNRGACDYETGLCECYTGYYGYNCGLQSVLAK*
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mRNA from alignment at P-littoralis_Contig832:106577..106708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig832.35.1 ID=mRNA_P-littoralis_Contig832.35.1|Name=mRNA_P-littoralis_Contig832.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig832:106577..106708- (Pylaiella littoralis U1_48)
GGCCTTGCGGGCAACCTTTGTCAGGTGGATTGCTCTAATCGGGGCGCGTG
CGACTACGAAACGGGCCTTTGTGAATGCTACACGGGATACTATGGCTACA
ACTGCGGGTTGCAATCTGTTCTTGCAAAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig832:106577..106708-

>mRNA_P-littoralis_Contig832.35.1 ID=mRNA_P-littoralis_Contig832.35.1|Name=mRNA_P-littoralis_Contig832.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig832:106577..106708- (Pylaiella littoralis U1_48)
GGCCTTGCGGGCAACCTTTGTCAGGTGGATTGCTCTAATCGGGGCGCGTG
CGACTACGAAACGGGCCTTTGTGAATGCTACACGGGATACTATGGCTACA
ACTGCGGGTTGCAATCTGTTCTTGCAAAGTAG
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