mRNA_P-littoralis_Contig832.21.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig832.21.6 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI) HSP 1 Score: 681 bits (1758), Expect = 4.360e-214 Identity = 559/1384 (40.39%), Postives = 657/1384 (47.47%), Query Frame = 1
Query: 1117 RVLELQETPCLPGSGIVMAVEGPCSASLLAKHGPLPDRSYICLVRPRRHKVGRVSERGGVAAKGGGGVGIFDAAYYWHGVGETPAVERVGILLCQQVDRMFPSPSTADCGKRRSGRRRR---GPGGVGLGDGMMRGYVADVKLGLPVPEGFWACLLPEISTPASVFASEGRRLLSDDLRPECRSRPVRVFGVCAGSRKARQSFVWEVTAGGMPCQMRLSPSLSHVVDAGGSSVYVWHGNGSSDNGRRLACRVARAYAARVEGGVSVHQVDAGSEPVGLLDCFIGWNQALVEPPPMLSMSPGRRYSRLESGADVSPLTTPATTPPRCALWSTEGMRSALGGRHDQRCYGNRSSGGHGTSSESSGSRLTPPGQRTPTLGLSSPPSLKNLTGGVYPPSHR---CVAATDG---MPAGALSTPPR-RHAATYNSTTGCGGRSGYGDCGFSSTPCLLGLTSCIDAFTADRTTSPTQLPGGAASFICGASSSSSSALDRPDDEXXXXDSTR--PRSDIAASRRAPPYADQGSRRIPRPKTERGEYPTNAGQ-QCAGGQGESGAGDDESRSENSADGXXXXXXXXXXXXXXXXXXXXEKKEGPGGWQNSGXXXXXXRDGDSGGSN-DXDGATTSGDSXXQXDEGQEVCGDDDGEDEAEECGAGEDMDTFLRLSEVELCEGIDVLRYGRTSAKFSTSSEALDSSIGGRSSGGGVENSLFSSRHLSDFFQSPLALDLTPRSSRRNESYSIFDSTNYVGAFSSPACGTSE-IAT--GTPIICDDN-------PPIIPGSKFA--------EDASNHHASPVVRSLPTDGPDDVLSAENDESLATVRHVEVNADPVLVKQGRPCAQVEIVESEKTEPIKEEKEQADICDAGLRDGSIDGGGGESEEEWLTRPDSDVVTPELE--SW-GINSESTLPSLGRHETTKPNALPTSKEEGPECTKTAAT------------VGQDWAGLNEDGSWRTEVARRAAGEAGAVEAERRRLAKISADESWRLDAGEVGQKGCCSTRDVRRESTSFTRLQTGNVRDKLNVFEGSSGSKAGKEKADNRTSIGALHGRGLVSAWTKRSNTYPTPPATTAQAALGPSPEGKSPKTTNVCTGDSPSHGRSAERQPRRPPGPTNDSEEDGEFLWKAGPAPCRLKGRPSLGLIRNGQVRIMTKALLMSCNEGVAG-ESEHTRSCDEADTKQSSKSSGESFEPPMPSKPXXXXXVETGAPPPLPVRPSKCGNSAERAPPTVRPSTSSG--------ATEQSPAVPKSNFWLAKAGLTRKKLDGLFPASAPATPPRNGGAWMQGGGTRTPPPTYLTGRTGAGVVAEARILDAASFSRERRHAGAATTTGVWARLHRRLEEEGKHLNQDTRID 5100
RVLELQE PCL GSGIV+AVEGPCSASLLAKHGPLPDRSYICLVRPR +VG +E+GGV GG VG FD YYWHGVGET AVE VGILLCQQVDRMFPSP G GG GL GMMRG+VADVK+GLPVP GFW C+LPE S S+ RR+L DLRP+ RSR VRVFGVCAGSRKARQSFVWEVT GGMP QM LSPSLSHVVDAGGS VYVWHGNGS+ +GR LA RVAR YAARVEGG SV QVDAGSEPVGLL+CFIG A P C S G S+ G SSG RLTPPGQRT L+SPPSLK + G V+P C A G + A STPPR R + T GC G G S LGL S +D T D S LP G++ + ++SA D P D+ D+ R PR AS D G + G P NAG +C GQGE +G+ +S+ E A NSG DG GGS D DG SG E + G+T A+ S ++ S +SSR++ S ++ DS + V AF + T++ ++T G I D PP + GS + A+N H++P +PT G +DVL EN + V D +LV A V + +T K+E+ A + D G EWL+ P+ + T W G E+TL + + P TS PE A G +WAGLN+DGSWRTEVARRAAGEAGAVEAERRRLAK+ ADESWR DA G RR+S SFT+LQTGNVRDKLNVFEG+SGSK GKEK NR+S+GALHGRGLV+AW K++ + PA+TA S SP + S+E EF WKAGP+PCRLKGRPSLGLIRNGQVRIM+KALLMSC EG + H SC G EPPMPS P LP R S G + +R P RP+ S + Q PA K N WLAKAGLTRK + G P T+L +A AR A +G WA+LHRRLEEE K+ N R +
Sbjct: 64 RVLELQENPCLQGSGIVIAVEGPCSASLLAKHGPLPDRSYICLVRPRSRRVGSANEKGGVHFCGGERVGTFDEGYYWHGVGETAAVEGVGILLCQQVDRMFPSPXXXXXXXXXXXXXXXXXXGIGGAGLFGGMMRGFVADVKVGLPVPNGFWECVLPEGSP------SDSRRMLWQDLRPDRRSRAVRVFGVCAGSRKARQSFVWEVTTGGMPSQMTLSPSLSHVVDAGGSCVYVWHGNGSNRDGRSLAVRVARVYAARVEGGASVEQVDAGSEPVGLLNCFIGNRSA----------------------------------PTGCRTSSGRGASSSSG---------------------SSGLRLTPPGQRTXXXTLNSPPSLKCMAGRVHPXXXXXXXCATAAVGGVTFNSEAFSTPPRNRGSMTCVPIPGCNG-------GSFSPISELGLASGVDGLTVD--VSSNCLPNGSSGALSPVLGCAASASDGPSDDWSSYDALRSPPRPASCASGGRAFSGDCGQAGSCAAGSPTGTLPRNAGHHRCVDGQGEGASGNGKSQRECPA--------------------------------NSGRDGHRSMDGGEGGSGRDGDGGNPSG----------------------RENSXXXXXXXXXXXXXXXXXXXXXGDQDGKTGARLFDSVRSVRSE--------------------------------DDKSSRKSGSGNLSDSVSCVRAFGATTGDTADDVSTDLGVGFIVDGEESPRCSPPPAVSGSAASLPGSLSPQGGATNDHSAPPP--IPTKGTEDVLVKENVDRFPKAASDSVLEDHLLVS-----AAVAAFKPLETADGKQER-AAGLGDEGXXXXXXXXX---XXXEWLSHPEEEADTAPAGPGDWIGRALEATL--VSKRAEAAPQCAATSHAGNPETAAAVAEGERGGEEDAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGA------PRRDSVSFTQLQTGNVRDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHH--PASTAINEQDSSGRSSSPPWSXXXXXX-------------XXXXXXXXSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSC----------LGGSLDEPPMPSTPPPPLPASIATXXXLPARNSLVGANPKR-PLPARPTRGSXXXXXXXXISAGQRPAAAKGNIWLAKAGLTRKHVAGSSXXXXXXXXXXXXXXXXXXXXXXXP--THLAXXXXXXXMAAARAKGA---------------SGAWAKLHRRLEEESKNFNGKRRAE 1229
BLAST of mRNA_P-littoralis_Contig832.21.6 vs. uniprot
Match: A0A6H5KWX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX8_9PHAE) HSP 1 Score: 295 bits (755), Expect = 3.680e-81 Identity = 232/565 (41.06%), Postives = 297/565 (52.57%), Query Frame = 1
Query: 3046 DMDTFLRLSEVELCEGIDVLRYGRTSAKFS-TSSEALDSSIGGRSSGGGVENSLFSSRHLSDFFQSPLALDLTP-------------------------------RSSRRNESYSIFDSTNYVGAFSSPACGTSE-IATG--TPIICD--DNPPIIPGSKFAEDAS-------------NHHASPVVRSLPTDGPDDVLSAENDESLATVRHVEVNADPVLVKQGRPCAQVEIVESEKTEPIKEEKEQADICDAGLRD--GSIDGGGGESEEEWLTRPDSDVVTPELE--SW-GINSESTLPSLGRHETTKPNALPTS--KEEGPECTKTAAT------------VGQDWAGLNEDGSWRTEVARRAAGEAGAVEAERRRLAKISADESWRLDAGEVGQKGCCSTRDVRRESTSFTRLQTGNVRDKLNVFEGSSGSKAGKEKADNRTSIGALHGRGLVSAWTKRSNTYPTPPATTAQAALGPSPEGKSPKTTNVCTGDSPSHGRSAERQPRRPPGPTNDSEEDGEFLWKAGPAPCRLKGRPSLGLIRNGQVRIMTKALLMSCNEG 4533
+ DTFLRLS+VE CEG+ L G S++ S TS+EA +S GG SGGGVEN SRHLSDFF+SPL+LD P + SR++ S + DS + V A + T++ I+TG +I D ++P P S ++ A+ N H++P +P +G +DVL EN ++ + DPVL + + + E I+ E+E+A AG+ D G EWL+ P+ + T W G E+TL + + P + T + + PE A G WAGLN+DGSWRTEVARRAAGEAGAVEAERRRLAK+ ADESWR DA G RR+S SFT+LQTGNVRDKLNVFEG+SGSK GKEK NR+S+GALHGRGLV+AW K++ + PA+TA + + S R DS+E EF WKAGP+PCRLKGRPSLGLIRNGQVRIM+KALLMSC EG
Sbjct: 153 ETDTFLRLSDVEFCEGVGTLESGGASSELSVTSNEAFGTSTGGGRSGGGVENGTVLSRHLSDFFRSPLSLDSPPVQRFSSIRSLSDVQTGARLFNSVRSVRSEDDKPSRKSGSGKLSDSVSCVRASGATTGDTADDISTGLGVGVIVDGEESPRCSPPSAVSDSAASLLDPLSPHGGATNDHSTPPP--IPANGTEDVLVKENVDTFP-----KTAVDPVL--EEHLFVSDAVATFKPLETIEREQERA----AGIGDESGXXXXXXXXXXXEWLSHPEEEADTAPAGPGDWIGRALEATL--VSKRAEAAPQCVATGCVQADNPETAAAVAEGERGGEEDAGAGAGHVWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGA------PRRDSVSFTQLQTGNVRDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHH--PASTAI-----NEQDSSXXXXXXXXXXXXXXXXXXXR--------AGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEG 681 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig832.21.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig832.21.6 >prot_P-littoralis_Contig832.21.6 ID=prot_P-littoralis_Contig832.21.6|Name=mRNA_P-littoralis_Contig832.21.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1676bp MRGKTAASTDWSAAAFSCCTPTPTPTATPSQTPLNTPTPTPPKGVHGDSGback to top mRNA from alignment at P-littoralis_Contig832:84235..106171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig832.21.6 ID=mRNA_P-littoralis_Contig832.21.6|Name=mRNA_P-littoralis_Contig832.21.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=21937bp|location=Sequence derived from alignment at P-littoralis_Contig832:84235..106171+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig832:84235..106171+ >mRNA_P-littoralis_Contig832.21.6 ID=mRNA_P-littoralis_Contig832.21.6|Name=mRNA_P-littoralis_Contig832.21.6|organism=Pylaiella littoralis U1_48|type=CDS|length=5028bp|location=Sequence derived from alignment at P-littoralis_Contig832:84235..106171+ (Pylaiella littoralis U1_48)back to top |