mRNA_P-littoralis_Contig832.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig832.36.1
Unique NamemRNA_P-littoralis_Contig832.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig832.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig832contigP-littoralis_Contig832:116178..116794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size617
Hectar predicted targeting categorysignal peptide
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.6167421-UTR-P-littoralis_Contig832:116177..1162171680791696.6167421-UTR-P-littoralis_Contig832:116177..116217Pylaiella littoralis U1_48UTRP-littoralis_Contig832 116178..116217 +
1680791696.6446638-UTR-P-littoralis_Contig832:116559..1167941680791696.6446638-UTR-P-littoralis_Contig832:116559..116794Pylaiella littoralis U1_48UTRP-littoralis_Contig832 116560..116794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.634285-CDS-P-littoralis_Contig832:116217..1165591680791696.634285-CDS-P-littoralis_Contig832:116217..116559Pylaiella littoralis U1_48CDSP-littoralis_Contig832 116218..116559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig832.36.1prot_P-littoralis_Contig832.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig832 116218..116559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig832.36.1

>prot_P-littoralis_Contig832.36.1 ID=prot_P-littoralis_Contig832.36.1|Name=mRNA_P-littoralis_Contig832.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MCPDSNLLVSASVLALALFASLRLFRSRTELLPPIIAPHCVCRQCCYDFL
VSVPPSGLRFLTFTLRLPLLCCLVSCLSSWLSLRMPPSSHCPGDLVCCFR
AFVLFSFLVCLLG*
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mRNA from alignment at P-littoralis_Contig832:116178..116794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig832.36.1 ID=mRNA_P-littoralis_Contig832.36.1|Name=mRNA_P-littoralis_Contig832.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig832:116178..116794+ (Pylaiella littoralis U1_48)
CGTATACCTTGCCTTCTGGATTTTGGATACAAGATTTGGTATGTGTCCGG
ATTCTAATCTTCTGGTTTCTGCGTCTGTACTAGCCCTTGCCCTGTTTGCA
TCCCTCCGACTTTTCCGTTCCAGGACTGAGCTTTTGCCACCCATCATTGC
CCCGCACTGTGTTTGCCGGCAATGCTGTTATGATTTTCTGGTTTCCGTTC
CACCAAGCGGCCTGCGTTTCCTGACATTTACGTTACGCCTGCCGCTTTTG
TGTTGTCTTGTTTCCTGTCTTTCTTCGTGGCTTTCCCTCCGGATGCCACC
GTCAAGCCATTGTCCTGGCGACTTAGTGTGCTGTTTTCGTGCTTTTGTTT
TGTTCTCCTTCCTCGTTTGTCTTCTGGGTTGACAGTTGGTTTAGTTTTGC
CGCTTTCCAGCTCCCTACACCTTCGCTTTTCGCCTCAGCGTCTGTGTCTG
CGTCTTCCCGCTTCCGGCTCTGCTTTACATCACGTAGATCCCCGCCGCTT
ACATGCCGTGTCATTTTCGGTCTTCGTGTTGTAGTGTGTTTCAACCTTCG
CTTTCCGGCTGAGGCCCCGCTGTAATCGCTTGGTTTCCTCGCTGTCGGCG
TTGCTTTTGAACTTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig832:116178..116794+

>mRNA_P-littoralis_Contig832.36.1 ID=mRNA_P-littoralis_Contig832.36.1|Name=mRNA_P-littoralis_Contig832.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig832:116178..116794+ (Pylaiella littoralis U1_48)
ATGTGTCCGGATTCTAATCTTCTGGTTTCTGCGTCTGTACTAGCCCTTGC
CCTGTTTGCATCCCTCCGACTTTTCCGTTCCAGGACTGAGCTTTTGCCAC
CCATCATTGCCCCGCACTGTGTTTGCCGGCAATGCTGTTATGATTTTCTG
GTTTCCGTTCCACCAAGCGGCCTGCGTTTCCTGACATTTACGTTACGCCT
GCCGCTTTTGTGTTGTCTTGTTTCCTGTCTTTCTTCGTGGCTTTCCCTCC
GGATGCCACCGTCAAGCCATTGTCCTGGCGACTTAGTGTGCTGTTTTCGT
GCTTTTGTTTTGTTCTCCTTCCTCGTTTGTCTTCTGGGTTGA
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