mRNA_P-littoralis_Contig831.20.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig831.20.2
Unique NamemRNA_P-littoralis_Contig831.20.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.680e-119
Identity = 182/205 (88.78%), Postives = 192/205 (93.66%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEKTKK 615
            MVKHNNV+PNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPT+KYNSKVRLGRGFN +ELKEAGISKK ALTIGIAVDHRRTNKSEE+FA NVARLKEYRANLI+FPRGSKHLPK GDSSLEEQ AATQ   GVTMPLVK DKPV+F  +T EM++ +LHSERRVARNEFKLAGIRIRQKEEKTKK
Sbjct:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV-TGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEKTKK 204
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BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A836C9T6_9STRA (60S ribosomal protein L13 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T6_9STRA)

HSP 1 Score: 239 bits (611), Expect = 7.260e-74
Identity = 128/202 (63.37%), Postives = 148/202 (73.27%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEK 606
            MVKHNNV+PNGHFHKKWQ RV+TWFDQP KKKARR  R  KAA +APRPTQLLRPAVHCPT+KYN KVRLGRGF   ELKEAGIS+KVA TIGI+VDHRRTN+S      NVARLKEY++ LI+FPR S   PK GD++  +  AA Q   G  MPL K    V F A+T EM +   +   RVAR++ +L GIR +Q  EK
Sbjct:    1 MVKHNNVIPNGHFHKKWQTRVKTWFDQPMKKKARRMRRAAKAAAVAPRPTQLLRPAVHCPTIKYNMKVRLGRGFTLAELKEAGISRKVARTIGISVDHRRTNRSLATMQNNVARLKEYQSKLIIFPRRSNAKPKAGDAAPGDTAAAAQV-TGAVMPLTKAVPAVAFAAVTDEMKAFKAYEALRVARSDARLVGIRKKQAAEK 201
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BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 224 bits (570), Expect = 8.830e-68
Identity = 123/205 (60.00%), Postives = 151/205 (73.66%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEKTK 612
            MVKHNNV+PN H HKKWQRRV+TWFDQPAKKK RR AR+ KAAK+APRP   LLRP VHC T KY+SK RLGRGF+  ELKEAGI KKVA TIGIAVDHRRTNKS EA   N+ARL E++A L+VFPR S   PKNGDS+ EE + ATQ   G  +P+VK D+ ++  A+T EM +    +  R+A+++ ++ G+R  +   K K
Sbjct:    1 MVKHNNVVPNVHCHKKWQRRVKTWFDQPAKKKNRRLARKAKAAKLAPRPVSGLLRPVVHCSTQKYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQL-TGPILPIVKTDE-LETAAVTDEMKNFKAFTSLRLAKSDARVLGLRASRAAAKAK 203
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BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: K8Z7Z7_NANGC (Large subunit ribosomal protein L13e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Z7_NANGC)

HSP 1 Score: 224 bits (570), Expect = 9.430e-68
Identity = 119/195 (61.03%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIR 585
            MV+HNNV+PN HFHK WQ RV+TWF QPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF   ELKEAG++KK A ++GIAVDHRRTN S E+   NV RLKEY++ LIVFP G    PK GDSS  E  AA QA  G  +PL    K V+F ++++E+ +   H+  RVARN+ KL GIR
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQA-TGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
[Close]
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN)

HSP 1 Score: 221 bits (563), Expect = 1.050e-66
Identity = 117/194 (60.31%), Postives = 147/194 (75.77%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAG 579
            MVKHNNV+PNGHFHK WQRR++TWFDQ AKKKARR  R+EKAA +APRP   LLRPAVHCPTVKY SKVR G+GF+ +ELKEAGISKK AL+IGIAVD+RRTNKS E+   NV RLK Y+A L++FPR S + PK+GDS+ EE   A Q   G   P+ +     +   IT+EM + +++++ RVAR + ++AG
Sbjct:    1 MVKHNNVIPNGHFHKDWQRRIKTWFDQAAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQV-TGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAG 193
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BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.050e-66
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEK 606
            MVKHNNV+PNGHFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRPAVHCPTVKY SKVR GRGF  DELKEAGIS+K ALTIGIAVD+RRTNKS E+   NV RLK Y++ L+VFPR     PK+GDS+LEE   A Q   G  +P+ +  K +    IT +M   ++ +  R+AR + +L G+R ++  EK
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQ-HTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAEK 202
[Close]
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A7R9WAC9_9STRA (60S ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.210e-65
Identity = 116/202 (57.43%), Postives = 145/202 (71.78%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEE 603
            MVKHNNV+PN HFHK+WQ RV+TWFDQPAKKKARR AR+ KAA +APRP   LLRPAV CPT +YN+KVR GRGF  +ELK AGISK+VA TIGIAVDHRR+NKS      NV RL  Y+A L+VFPRGS   PK GD+S+EE +AATQ   G   P+       +F A+T ++ + N +   R+ R   ++ G+RI++ +E
Sbjct:    1 MVKHNNVVPNQHFHKQWQNRVKTWFDQPAKKKARRAARKAKAAAIAPRPAAGLLRPAVRCPTQRYNTKVRAGRGFTLEELKTAGISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQL-TGPLFPITAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKRAKE 201
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BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A1V9ZTH1_9STRA (60S ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZTH1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.210e-65
Identity = 118/203 (58.13%), Postives = 145/203 (71.43%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEK 606
            MVKHNNV+PNGHFHK WQ R++TWFDQ AKKK+RR  R+ KAA +APRP   LLRPAVHCPTVKY SKVR GRGF  DELKEAGIS+K ALTIGIAVD+RRTNKS E+   NV RLK Y++ L+VFPR     PKNGD+S EE  +  Q + G   P+ +    V    IT+EM + ++    R+AR + +L G+R ++  EK
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRISKPKNGDASAEELKSVVQHK-GALFPIARASTEVATAKITEEMKNDSVVKTLRLARADARLVGLRKKKAAEK 202
[Close]
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.650e-65
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 1 
Query:    4 VKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKEEK 606
            +KHNNV+PNGHFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRPAVHCPT+KY SKVR GRGF  DELKEAGIS+K ALTIG++VD+RRTNKS E+   NV RLK Y++ L++FPR     PK GDS +EE   ATQ   G  +P+ +P K V    IT+E+ + ++    R+AR + +L G+R ++ +EK
Sbjct:    1 MKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQL-IGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLRKKKADEK 201
[Close]
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Match: A0A7R9YEQ6_9STRA (60S ribosomal protein L13 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 6.790e-64
Identity = 116/196 (59.18%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRRTNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQARAGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRI 588
            MVKHNN++PN HFHKKWQRRV+  F Q A+KKARR  R  KAA MAPRPTQLLRPAVHCPT +Y++KVRLGRGF  +ELK AGIS K+A TIGI+VD RR NKSEE+   NV RL+ Y+  L++FPR +   PK GD++ EE  AAT+   G  +PL   D  V++  +T EM S    S  RVARN+ KL G RI
Sbjct:    1 MVKHNNIIPNQHFHKKWQRRVKVPFGQAAQKKARRMKRVAKAAAMAPRPTQLLRPAVHCPTQRYSAKVRLGRGFTLEELKAAGISPKMARTIGISVDKRRVNKSEESLNANVERLQAYKEKLVLFPRRTAQ-PKKGDATAEEVAAATEQYVGDILPLEAKDTEVEYAEVTDEMKSFGARSTLRVARNDHKLIGKRI 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig831.20.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K6_ECTSI1.680e-11988.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9T6_9STRA7.260e-7463.3760S ribosomal protein L13 n=2 Tax=Tribonema minus ... [more]
A0A7S2UYA0_9STRA8.830e-6860.0060S ribosomal protein L13 n=1 Tax=Fibrocapsa japon... [more]
K8Z7Z7_NANGC9.430e-6861.03Large subunit ribosomal protein L13e n=3 Tax=Monod... [more]
A0A2D4BG90_PYTIN1.050e-6660.3160S ribosomal protein L13 n=1 Tax=Pythium insidios... [more]
A0A1V9ZEJ6_9STRA3.050e-6657.6460S ribosomal protein L13 n=1 Tax=Thraustotheca cl... [more]
A0A7R9WAC9_9STRA1.210e-6557.4360S ribosomal protein L13 n=1 Tax=Pseudictyota dub... [more]
A0A1V9ZTH1_9STRA1.210e-6558.1360S ribosomal protein L13 n=3 Tax=Saprolegniaceae ... [more]
A0A024TY88_9STRA1.650e-6555.9460S ribosomal protein L13 n=4 Tax=Aphanomyces TaxI... [more]
A0A7R9YEQ6_9STRA6.790e-6459.1860S ribosomal protein L13 n=1 Tax=Pinguiococcus py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig831contigP-littoralis_Contig831:96003..104312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7K6
Preferred nameRPL13
PFAMsRibosomal_L13e
Model size1346
Max annot lvl2759|Eukaryota
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
Evalue1e-123
EggNOG OGsCOG4352@1|root,KOG3295@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
Descriptionstructural constituent of ribosome
Cds size618
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig831.20.2prot_P-littoralis_Contig831.20.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig831 96003..103584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.3756251-CDS-P-littoralis_Contig831:96002..960831680791696.3756251-CDS-P-littoralis_Contig831:96002..96083Pylaiella littoralis U1_48CDSP-littoralis_Contig831 96003..96083 +
1680791696.3919716-CDS-P-littoralis_Contig831:98017..981251680791696.3919716-CDS-P-littoralis_Contig831:98017..98125Pylaiella littoralis U1_48CDSP-littoralis_Contig831 98018..98125 +
1680791696.40351-CDS-P-littoralis_Contig831:99321..994441680791696.40351-CDS-P-littoralis_Contig831:99321..99444Pylaiella littoralis U1_48CDSP-littoralis_Contig831 99322..99444 +
1680791696.413708-CDS-P-littoralis_Contig831:100562..1007031680791696.413708-CDS-P-littoralis_Contig831:100562..100703Pylaiella littoralis U1_48CDSP-littoralis_Contig831 100563..100703 +
1680791696.4270995-CDS-P-littoralis_Contig831:102783..1028431680791696.4270995-CDS-P-littoralis_Contig831:102783..102843Pylaiella littoralis U1_48CDSP-littoralis_Contig831 102784..102843 +
1680791696.4381053-CDS-P-littoralis_Contig831:103479..1035841680791696.4381053-CDS-P-littoralis_Contig831:103479..103584Pylaiella littoralis U1_48CDSP-littoralis_Contig831 103480..103584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.4474225-UTR-P-littoralis_Contig831:103584..1043121680791696.4474225-UTR-P-littoralis_Contig831:103584..104312Pylaiella littoralis U1_48UTRP-littoralis_Contig831 103585..104312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig831.20.2

>prot_P-littoralis_Contig831.20.2 ID=prot_P-littoralis_Contig831.20.2|Name=mRNA_P-littoralis_Contig831.20.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MVKHNNVLPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPT
QLLRPAVHCPTVKYNSKVRLGRGFNTDELKEAGISKKVALTIGIAVDHRR
TNKSEEAFATNVARLKEYRANLIVFPRGSKHLPKNGDSSLEEQNAATQAR
AGVTMPLVKPDKPVDFQAITKEMSSANLHSERRVARNEFKLAGIRIRQKE
EKTKK*
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mRNA from alignment at P-littoralis_Contig831:96003..104312+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig831.20.2 ID=mRNA_P-littoralis_Contig831.20.2|Name=mRNA_P-littoralis_Contig831.20.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8310bp|location=Sequence derived from alignment at P-littoralis_Contig831:96003..104312+ (Pylaiella littoralis U1_48)
ATGGTAAAGCACAACAACGTCTTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGGTGAGTGGGCGAGGGCAGA
GCAGCAACCAAGCACCACACAGGCCCACAACAAAAATGCACACCTGCACA
CCCCAGTCCAGAGATAGACAGAGAGAGGGTCAAAGGAAGGCCAACAAGAG
GTGGTGGCAAAAGCGTATCTCGTGATCGTTAGAGATGATCCCAACTCTAG
CACCACGCTGTCCAGAGGTCGATTGCCTAGCTTTGGTGCGTCGCCTGCCC
ATTGAAACGAAAGGGCTGAGAAACTGCTGTTGCGGCAGTCAACAGGGAGA
ACCTCCCCCCACACAACGCAACCGAAGCCTCTGTTCCCAAGACCTTGAGA
GAGCTCTGAAGCAATTAGAGAAACTGATCAGGTGGACGAGCGTAGTCACT
GCTGTACCTTCTACCGTGAAGTTCGCTGCCGCTTTTAGCTAAAGAGCACA
AGTTGGCCTGCCTACCGGCGATACACCCACCGCACCTCGCTGCTGGGTCT
ACCGTTCCCCCTTGTGTCTAGTACGTCCAAGGAAACATAGTGAAAGCAAG
TACAAGTAGCAGCGCTTGTTCGTCCAGACTTCAGCCGCAGGTCGAATTAG
AGACCAAACGCCCCAAACGCCGACGGCTGTCAGCAGCGAAGACACGAAGA
CACATTCCGGGCCACTGCTTCTGTTATGATATACTTCGAAGCATACGACG
AGGCTCTGTAGTGTGTGCAAACCTGGGGTGTCGCGAACGCACGCACGCAC
CTTCTAGAGTCCACAACAGCGAAGTTAAACGTAGAGCTGGCCTTCCCGGA
GTAGATGGACATGGACATCGTTCTCTTCCCAGAACGTCTTTGTCCCCCCC
ACAGCACCTGCCACCGCAGCTGTTGATGTCTGCTCTAAGATGCTCCTGTC
CTGTTACTGACATCGATCACACTGCCGTGAAATTGAAGATGAATTGGCGT
ATTTGTAAAGCTGTAACAGCAGTTCTCGCGAACACCCCCCGGGGGAGGAC
CACGCATAAGTGTATTTGTACAACAATATCATGTCAATACTTGACCTCCG
GAATCTCCTAGATAAACAAAAGATAACCGCGGTATACAAGCTCGCTGGCG
GTGTAACGTCGAAGGATAAATGCTGCGGTTCAAAATTCAATGAGCTTATC
GAAAAATAAGGAAGCAATTGGACAGAGATGAGTCACGGACGAAGAGAAAC
ACGCGCTTTTCACACCTGTCCCGTGTTTCAATATTGCAGTCAACATGTGG
ATACATGTCAAGTATTTAGCCTCACAGCATGATTCGTGGTCGCCTTTACT
CCGTGCTAATTACATAACGATAAAAACTACTTAGAAGTAAATAGGAGCAA
GTGTTTTCATGTACACGGTTGGTTCCATGTCGAACTTGGCTAACCAACCT
TTTCGAAGTGCAAAGTGAAGCATGCCTTCGGCGTTCATTCAGCATGGACC
TCATTTTTTGTTGTATCTTACCGTCTTTTTTCGCCAACAAGTGTGGTTGC
CGCCAAGACATGAGTAGCAGTCGGCCCCACCGACGAAACCTTCCGTGTAC
GCACCGCATGCCCGAAACAACACACAAACCACTTACGAGTACTTGTACAC
GGCATCCATATATGAAAGTTGCCTCCTGTCTAGTTGGATTGCACACATTT
TCGGCCTGCACCAGAAGTTCCATCGCGCTGGTGTAGTATCGGCGAGTAAG
AATGCACCGATCACACCCGTGGTCGCCGGTGACCGAACAGGCCGACTTGC
ACCAATGCCGGCAGTGTGGTACACCATAAAATGCGATGAAAACAGCGAAA
GGAAGCTTGCATATTTGTGTAGCATCACCTGCTGTCATTTCAAAATGCTG
CAATGTATTTGATATGAGGAGTTGCCCCTTTTCCACTTTGTCTTTACGGA
TGTTTTGGTGTCACCGACGGTTACACGATTGTTTTGTTTTTTCGACGGTT
TCGTGACGGCAACAGCCCGCCAAGAAGAAGGCGCGCCGCCAGGCACGGCA
GGAGAAGGCCGCTAAGATGGCGCCGCGCCCCACCCAGCTCCTTCGGCCGG
CGGTGCACTGCCCCACCGTCAAGGTGTGTAAAGCACAGGGAAAATGTGCA
AAAAAAGTAAGGTGCAGGCAGCACAGGTGTCGGGGCACGGGAATCGGCTA
CTTAGAGAAAACGCCTCTCGAGTGTTGTGGCCACCGTCGTGATTGCTCCT
GCTATAGATATCGGAGGTTTTGGTATAACTTAATTCTGTCTGCGGTACAA
CACTTTGCCTCAAAATGTATAGTGCCGATTCAAGCTTGCGAGAGGCGTTT
TCGGTGCTCTGCTGCTGAACCCACGTTGCATCGATACGATACTGAGAGTG
GATCAGAGGACCGCCGTCCAAGGATATCCAGGCGCCATACCCAAAGCAAT
CCACCTATTTTGAAGTACCTGTGCACTCGACCCGTAACATTGCATTTTTC
GTGACACCGAAAGGGCGGCGTCCTCAAGGCAAAAGTAATACGTATACGCA
ACGCATCCGGTGTATGAGCGTGCAGCACGGTAGCATTAGGCCTGGCAGTC
GAATGTTTGTGTGCATCTACTTTGAAGTACCACCTGTCCCACCCGTTGAA
ACACTAGACCTCCACCCAGCTGTTATTTCATCGCGTGCGACAGGTGTGAT
AGGCTTCAACATTATGAGCAATTCCCCCCCCCTACCCCCATTGTTTTTGG
TTGCGTTATATGCAATGTATGACACCAGTTTGATCGTAGGCGTGCTCACG
TTCCCACGGCATGCTCGAGTGTTTTTTCGGCCGATGATTTTGGTTCGTCA
GGCCGAGTTTGAAATTATACAAACAGCGAAACGTTGCGTGTTGGTGGGCG
GTCTGGCTTGAGGAACAACTATTCCTGTACCAGCTTAACGTTCTAGTTGC
GGCGGCAGCGAAATGATCCCGTTCCTACCCTTCTCGTTTTTGGCCCGCTA
ACTCTCACTTGGATTTTGGTTGTTGCCGCGGGCCCGCCGGGCGTTGACCC
TAATTCGGTCATGGCCGTGAAGAAGCAGGATATTTTTTTCTGACGTAAGT
AGGTCGCCTGACGTCAAGGCTGCTGACGCCCCCGCCCCGCCCGTTCCTCT
ACCCCTGCACCGGCAACGCCGTGTCGTTTGTTGCCCGGTGTGCATGATTA
CGCTGTGACGACTTTGTTTCCTGTTCTATGATGACCTTTCTTTTTGTTTT
TGCGTTGGCGCATTTGTCGGTCGGTGGCGGCCGATTTTCCTGTCTTTCAC
TTATGGTTTTATTCTACAGTACAACTCCAAGGTTCGCCTCGGACGCGGCT
TCAACACGGACGAGCTCAAGGAGGCTGGCATCTCCAAAAAGGTGGCACTC
ACCATCGGTATCGCCGTCGACCACCGCCGCACCAACAAGTCGGTGAGTGT
TTCGCGGGTGACGTGATCAGGGACAGAACCAGCGGGTGGCACGCCGGATA
CAGTAATCCCGCAGGTGTAGTTCAGGCGAACAAGAGAACAGGCCGCATTC
CTGTCCGATCGTGAGGCAAAAGAGACATGAACCGCACAAGGTGGTTAAAA
GAAAAAAACTCGTGCGTTATCTGTTTTCGTGTGACCCCGACTGGTTCTGC
TACTTCATTCCGACATGTTTAGACTGGTGCCAAGAATACAAATGGTGTAA
ACGCTCCCACTTGAAATCATTTTTTTTGCACGCGTTTTTTTCTGTGCTAC
GGCCTCCCCCGCCGCCTCTCTCTCTCTCTGCAGTGTATTGCAGTGCGCAT
GTTTTCCGTAGGGTAGAAGCATTCCCGCTGAATGTGCCATTTACAACGGG
CATCAGTGTTTGCGGTCAATTTTTTGTGTGCTGTGTCGTTGCTGAGGAAA
ACGAGAACAGCCGAACTCTGCCTCTGATGCAAAAAATGGCAAGAATCGCT
GAAGAAACGTAAAAAAAACTCGAAAAAAAACTCCCGTGTGATCTGTCTCT
GCCGACATCTGTGCGCCATCTTCGATCTATTTTGCAACCATGTATCGAAA
GGGTTGATCGGAGACGAAGGCGATAAAAATGCATGAAGCCTTTTTTGGAA
CCATGTTTCGAAAGTTTCGATTGAAAACAACGGTTCAATGCATGTAAAAT
ATTTGGAAACTTAGCCAGCGATGTAGCCTGCCTTGTCGGTTTGGGAAGCA
CTCTGTGTGGCCGATGGGCGCGTGCCGTTTGTGCACATTATCGTCGAACA
TAACCGCCCCTCCCTCAAACTAAAATCGAAAGAGAGCTATTCGGCTCAGA
AATGCGCTCGTCCTTTTTCCTGTTGAATCATTACTGTCCTTGCTGATGGT
CACATTGAGTCGTGTCCTCAACATATGTTGTAGCCCGTGGTCACAAGCAA
TAGGCGCAACAAACTTTTTTGTTTTCAAGTGGCGAAAACATTTGTGAGCC
GTGGTCGCGGCAAGCCAGTCAGGTACGTAGGCTTCCATAAAGCTCGTCGA
ATCAGCATCATAACATTTTCCTCCCTTCCACAACACGGCCGCCGCTTTTG
CTTACCGTAGGAGGAGGCGTTTGCGACCAACGTGGCTCGCCTGAAAGAGT
ACCGCGCCAACCTCATCGTGTTCCCCCGCGGCAGCAAGCACCTCCCTAAG
AACGGCGACTCGTCGCTCGAGGAGCAGAACGCCGCCACGCAGGCAAGAGC
CGTATTTCTCTCGGTTGGTTTTGTTGTCAACTCGCAGCGCCTGCAGGGAT
TTTTTAAGGATGCTTGAGATTCCACACATCAACCAGCCTTCGTACTGCTG
TAACAATGGAGAGGGTGAGGGAGGCCGTTTTGAGTAGGGCCCTCCACAGT
AACGCCTTGCTTATCCGTGGACTCGTGCAAGTGTCAGGGTATCGTTGATT
TACGTACCTGGACGTGGATGCATGCTTCTCCCCCTCCACTTTTTTTTCAG
TATGTGTTACTCGGAGTACTTTTTTGCCCCACGCGCCTAAACAGATGGCA
GTTATGAGACCCAAATTCATCGCTTGACATGACTTTGCCGTGAAACAGGC
CATTGCCACTGCCACACAGGCAGGGGTGAGGGGGGGGTTGAAGAGGGGGT
CGGAGACTTCCCTGCTAAGCTCCTCGGTTGTAGACCCTTATCTTTTCAGC
AGTTCTGATGGAGCTCTAGCTCAGCCGGAGCCATGCTGTAACAAAATAGG
ATGGCATGCGCTACCCGAAATTTTCCGACAGCGGGCTGAGAGCGCGCTGT
CGAATCAGCCCGCTGACATTTCGCTCGTCCGAAAAAGCAATTTTGAGGTA
TAGAGCATATCCTCCACTTTAGCATCGGCTACCGCTGCCGTAGGGCTATA
CTGGTCTACAAGAGACCGGCCGTTCGATACCCTGCATTTCCCGGGAGGTT
ACGGACCTTTATTACGACAAAACCATCTCGAAGTTCGAAATGACAAGTTA
CACTGCTGAGTTGTAAAAGCAAGCGGGCGACAAGAGGGAGAGGCGATTCG
CAAAATTGGTGGGTTGGCAGGCTTGCATATGCAGCTTTCTACAGTCAAAA
CAATGTTCTCAAATCTGTGACAACTGAGGCCGCTTACAAATACCCTTTAA
AAGCAATAAGCAAGGCGTTCGAAGTACTGATGCGCTGTCGTTGTTACATC
AGGGCAGCGGTGTCGAAAACCGCTTTGGTTTCGACCGTTCGCAGCACCAC
CGTCGCCGTAGTTAAGGCATGCTTGGTTATGGTGAGGCGGCCGGCCGACT
ATAGGAGCCCAGCTTTCCGGCACGATGGTCCCGCCGCTACCGGGGTGTTA
GCGACAGTTATTTGCTTTTAGGCTGTTCCTTTGACAGCCGTTGATATCAT
GCGCACTTGGTGTGTGGCGCTGCGGTAAAAACTGCTGTAGGGGCACGATC
GGAGGCTGGAAAATTTTCATCTTTGATTACCTCAATTTCGTTCAGAGAGA
GGAAGGCCATGGCGGAAAGGCGGCCTTTGTTGTAAGTGTCCCCTCCTTGG
ACTCTTGCCATGAACACGCTCTCTATGAAAAAAGTGTTGCGGACAAAAAA
GGCTGATCACCACAGACGTCGGTTTCGCGGCGAACTCCTCTGAAACCGAC
CTTTTCGATAGTCGGTCTATTTCGGCATCACTACCAACACCTATTTCGAG
CAGGCTTGCTGATGGTGGAGCCCACGGTAGTTTCCCCTGCCAACGTCGAC
TTCCTGCTTCGGCCTCTCTCTGTGTTGACTTCCGCACCAAAATTATCCTC
CTCGATTACGGTATTGACAGAAGACCTGGTTGTACCTGTCCTGCTGTCGC
TTCCTAGCAGTACAAAGGTCTTCAGTCACTCCAATAATAACCCCCGGTCA
CGACGACTGTGTGAGAGATGTATCCGTTATTTATCAGGAACTCTCTTACG
TGAATCGAACGCCTTGCACTCCTGAGCTCACACTGCATGCGCTTCGGACG
ACCCTCGCCACTCTTGTGACCTCATGAAAAAGCCTTGAAGGTTTCCATCT
CGGTGTCTACAGGGGTGATATTATCTCCAAGGATGTGTCGTCAAGGGTTC
CGGAAATCATTGTTGTGATGCATATCTTTGGGGTGGCAGCGCTGCCGCCT
GTACGTGGGCTCCGTCCTCTTGTTGCCACACGTGCGGGCGTTTTTGTGGT
CCCGGTCGGATTCGCTTTTCTCCTTAGCGCTGATATCTGTTTTTTTTTTT
CTTTTGCACCCCTTGCGTGTTTTCTTTGTCCCTTGTCCCTTTTCCTGCGG
TCCCTTGTTTTGTTTGTGTTCTTAGGTGAAGGGTGTGACCATGCCCCTCG
TCAAGCCCGACAAGCCGGTCGACTTCCAGGCCATCACCAAGGTGAGTTGG
TCTCATCCTCACCGTCACCCCCATCCCCAGTGTTGTCGTGATTTTGGTTG
TGACAACTTATCAGAGGCGTGCCTCCTTTTTGGATGTGACGTGATGCGTG
CCGATATGCTTTTTTGTCGCTCCAAACAGTTGAAATAAAAGTTTGTCTGC
TGGCACTCATTCTGTCAAAAGTCTGGCTACGGCATTCGTGTTTGTTGTGT
GGGTCTATCCATGGCACGCTTACTGTAGTTTTTTTACGTTTTTCGGTGCG
TGTTGATTATAACGCGCGTTTGTGGTACTCCTGCCGTGTGTCTGTCTTTA
TTGCGCATCGATGTCGACGTAAACAACAACGAACAACACATACGTTGTTC
CGTCGCGAGTGTCATGTTCGTCCGTCTCTGCTGCTTGGTGCTCACACAGA
CAAGCGACGAGTGTCTACCGGTAGGTTTTTTCAGACTCGCTGGCTGGCTC
TTTTTCTGTCTTGTCTCTCACGACGCGATCGTCGCTTGCCTCCGTCACGT
GACATGCTTGCACGAACGAACAAGCCACGCGGCTTGTGTACCGGTTTGTT
CTCTTTTTCTCACGCGCTTGTTCGTTCGTTCCTCCGTCCGTCTCTCTCGC
GTAATACTTCGGTCATCACCATCGTAGGAGATGTCGAGCGCCAACCTCCA
TAGCGAGAGGCGCGTGGCCCGCAACGAGTTCAAGTTGGCCGGCATCCGTA
TCCGTCAGAAGGAGGAGAAGACAAAGAAGTAGACCTGTCCAAATATTTTT
CCAAAAAACCTCCTCAGGAATTCCCCCAAGGTACTGTTCTCAGGAAGCTG
TGGGGTCTTCTCGTTTGGAGCGGAAAGGGGGGCGGCTGTTGTTCGCGTGG
AAGTATTTCTGCGCAGCACGCGCTTCGGTTGTTGAGTTGTCTCCTGATTT
GATTCGCGAGATTTTCTGACGTCGGGCCTTGGCGTCAAGAGGGCACTTAC
AAAAAAATTTTTAACACTGGTTGTTTGCACACGTGGTGTGTTTGCAGCGA
ACCTTATGGTGAGCTTTGTCGTCCTGCCTGCTACACTCGTGATTGTGCGG
GTTCATGACCTCCTGTACCTACGAAAGCCGTGTCTTTACTGAGGAGGGAA
AGGCGCGTATATTGGCCCCAACGGTTGATGGCAGCACACGCTTAAAACGT
GTGCGTTGTCGTGAGGCCCCTCACTCCTTTCATTGCCGCGGCATTCTCAC
GAAGTCTGCGGTGAATGCACTGCGTATCAGCTGTGCTCAGATAGGGCAGC
TGCCACCCGTTATTTTTCCCTTCAGCACCATTCCGATGCCTCGCAAAGCC
CTGCGTCGTTTTTATGGGCCCCAACCCTCGGAATAATATACTCCGGAGTA
TGAACTAATAATCTGCATCAGTGTTGATGGTGGCTTGGTGTGTGATCGCT
ATGATGTCAAAAAATGAAAGGAAGAGATTGAACGCAAAATGCGATCGTGT
GAATAGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig831:96003..104312+

>mRNA_P-littoralis_Contig831.20.2 ID=mRNA_P-littoralis_Contig831.20.2|Name=mRNA_P-littoralis_Contig831.20.2|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig831:96003..104312+ (Pylaiella littoralis U1_48)
ATGGTAAAGCACAACAACGTCTTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGCCCGCCAAGAAGAAGGCGC
GCCGCCAGGCACGGCAGGAGAAGGCCGCTAAGATGGCGCCGCGCCCCACC
CAGCTCCTTCGGCCGGCGGTGCACTGCCCCACCGTCAAGTACAACTCCAA
GGTTCGCCTCGGACGCGGCTTCAACACGGACGAGCTCAAGGAGGCTGGCA
TCTCCAAAAAGGTGGCACTCACCATCGGTATCGCCGTCGACCACCGCCGC
ACCAACAAGTCGGAGGAGGCGTTTGCGACCAACGTGGCTCGCCTGAAAGA
GTACCGCGCCAACCTCATCGTGTTCCCCCGCGGCAGCAAGCACCTCCCTA
AGAACGGCGACTCGTCGCTCGAGGAGCAGAACGCCGCCACGCAGGCAAGA
GCCGGTGTGACCATGCCCCTCGTCAAGCCCGACAAGCCGGTCGACTTCCA
GGCCATCACCAAGGAGATGTCGAGCGCCAACCTCCATAGCGAGAGGCGCG
TGGCCCGCAACGAGTTCAAGTTGGCCGGCATCCGTATCCGTCAGAAGGAG
GAGAAGACAAAGAAGTAG
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