mRNA_P-littoralis_Contig83.89.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.89.2
Unique NamemRNA_P-littoralis_Contig83.89.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 580 bits (1496), Expect = 3.820e-195
Identity = 393/593 (66.27%), Postives = 422/593 (71.16%), Query Frame = 3 
Query:   57 MTRRCLPVSNVLVAVCVVTGGSCGSSV-DGAPTVVTGFLAPWQPSTS-WGREAHTLASSSXXXXXXXXXXXXXXXXXXXXXXXXHPCWLGASRRLD------SSDGKAGVTAAATGNIRPLLLLSPLAPSXXXXXXXXXXXXXXXXXPTSTEMDAEWDGILARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERVWYDSYKERMKAEKAKEAAWQEKRKTFSKAHNDYLDESQHNREVAAARREKYTKKFFRNKKIYDIIKEKGRKTVREATWATRWPRQVTRKLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPASA-LASDDHTEDFEYDDT-RTRYTDEDGWDRD-EYDGGEEEXXXXXXXXXXXXXXXXXXEGENWFYPDRGQVIPAPV 1802
            M RR +PV +VL+ VCV  G        DG  TVVTGF AP QPST+ WGR+        XXXXXXXXXXXXXXXXXXXXXXXX                   +   A V+AA    +     L  ++PS                 PT+ EMDAEW+GIL+ D                                         XXXXXXXXXXXXXXX                    K RVWYDSYK RMKAEKAKEAAWQEKRKTFSKAHNDYLDE+Q NRE+AAARREKYTKKF+R+KKIYDI+KE+GRK VREATWATRWPRQVTRKLEDLQEGEW+ GKVRNVESYGAWVDVNAERDGLLHVKDMGETFTP+A +VVATKDII  RVKFVDP TGKLGLSLVEDGPREGDLPLPPPRPPISV DVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPA+A LASD   E+F+YDDT R RY+++DGWDRD EYD  E E  X     XXXXXXXXX EGE WFYP+RGQVIPAP 
Sbjct:    1 MMRRRVPVGSVLLVVCVAVGXXXXXXXXDGHRTVVTGFSAPPQPSTAAWGRQQSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSSAAEVSAAVVPGV-----LRRMSPSRRSTAAAAVAPLGARP-PTTEEMDAEWEGILSGDDEQEDVDEGDEDDDATAMLSDEELLATDASVGGLLGDEGEEXXXXXXXXXXXXXXXR-------------------KPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQVRVKFVDPVTGKLGLSLVEDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDTARVRYSEDDGWDRDNEYDD-EMEVEXGMNEFXXXXXXXXXDEGEEWFYPERGQVIPAPA 567
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 568 bits (1464), Expect = 1.940e-192
Identity = 300/358 (83.80%), Postives = 318/358 (88.83%), Query Frame = 3 
Query:  753 KERVWYDSYKERMKAEKAKEAAWQEKRKTFSKAHNDYLDESQHNREVAAARREKYTKKFFRNKKIYDIIKEKGRKTVREATWATRWPRQVTRKLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPASA-LASDDHTEDFEYDDT-RTRYTDEDGWDRD-EYDGGEE------EXXXXXXXXXXXXXXXXXXEGENWFYPDRGQVIPAP 1799
            K RVWYDSYK RMKAEKAKEAAWQEKRKTFSKAHNDYLDE+Q NRE+AAARREKYTKKF+R+KKIYDI+KE+GRK VREATWATRWPRQVTRKLEDLQEGEW+KGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTP+A +VVATKDII ARVKFVDP TGKLGLSLVEDGPREGDLPLPPPRPPISV DVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRP+GL APQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPA+A LASD   E+F+YDDT R RY+++DGWDRD EY+          E            XXXXXX GE WFYP+RGQVIPAP
Sbjct:   71 KPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVEDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDTARVRYSEDDGWDRDDEYEXXXXXXXXXMEVEDGMDEFGDDDXXXXXXXGEEWFYPERGQVIPAP 428
[Close]
BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A835YZW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW7_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.470e-54
Identity = 118/253 (46.64%), Postives = 149/253 (58.89%), Query Frame = 3 
Query:  843 SKAHNDYLDESQHNREVAAARREKYTKKFFRNKKIYDIIKEKGRKTVREATWATRWPRQVTRKLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLV----EDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPASAL 1589
            S+ H  YL E + N++ AAARR   +KKF+R K +YD I++K R+  +EA  ATRW R VT  L  L+ G W+ GKVRN+ES+GAWVDV AERDGLLHV DM E FTP   D   T DII   VK VD  T +L LS V    E+   E    L  P     + ++  G E+WG + +VTN G +V  G EV GFL + + P    G    +V  R +R+R Y +EVD E  R+KLT  RP  LPR G A  L
Sbjct:   49 SEQHKQYLAEVEENKKRAAARRLANSKKFWRKKVVYDFIRDKTREQSKEAAAATRWERNVTHPLASLERGVWLTGKVRNLESFGAWVDVGAERDGLLHVSDMSEGFTPRVADAFNTGDIISVTVKHVDAGTNRLALSAVAVSLEEEAEESYEALKTP-----LGEMEEGDEVWGEITKVTNFGVFVEAGVEVAGFLHVSDWPAAA-GRRPSEVFSRRQRVRTYVKEVDTEASRLKLTGVRPSYLPRIGGAQLL 295
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.500e-29
Identity = 76/193 (39.38%), Postives = 117/193 (60.62%), Query Frame = 3 
Query: 1014 RQVTRKLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDM-GETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPPRPPISVRDVSRGA--------ELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 1565
            R V++ L +LQ G+ + G VRNVE +GA+V V AE+DGLLH+KDM    +   A +V  + D +  +VKFVD     LGL++ E    +  +P+ P     ++ ++ R +        ++WG VERVT+ GA+V++GAEV  FL + + P R K  SA +   R +RLR+Y +EV+ +  R+K+T +RP  LP
Sbjct:  134 RVVSKPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKELD--DQGMPMIPEEVASALANLDRQSLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHILDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTAERPEWLP 324
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A7S2EYN2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYN2_TRICV)

HSP 1 Score: 123 bits (308), Expect = 1.070e-26
Identity = 78/189 (41.27%), Postives = 105/189 (55.56%), Query Frame = 3 
Query: 1032 LEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMG-ETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPP--------RPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIP--GRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 1565
            L DL  G+ V+G V ++ +YGA+VDV +ERDGLLHV  +  + F    R V++  D++  RV  V P   KL LS+         LPLP P          PI + D+    ELWG +ERVT+ GAYV +GAEV GFL   + P  G   G +    +R   R+RV+A +VD E  R++LT  RP  LP
Sbjct:  170 LSDLTVGQEVEGTVISLVNYGAYVDVGSERDGLLHVGQITRDLFVEHPRQVLSPGDVVTVRVARVSPELKKLQLSM---------LPLPAPLDPDDVSDADPIPLSDIDVNDELWGQIERVTDYGAYVELGAEVEGFLHFMDHPEFGLTPGATPDTYMRPGDRVRVWAADVDEEKGRVRLTANRPEGLP 349
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: W7TP35_9STRA (30s ribosomal protein s1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP35_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.340e-23
Identity = 89/249 (35.74%), Postives = 131/249 (52.61%), Query Frame = 3 
Query:  846 KAHNDYLDESQHNREVAAA-------RREKYTKKFFRNKKIYDIIKEKGRKTVREATWATRWPRQVTRKLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGET-FTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPR 1568
            K H D+L E   N++ A A       +R++Y ++  +  K+  I KE+     +   W  R  R+    L +L+ G   +G V  V+ +GA+VD  A +DG + ++D+ +  F   ARD V   D +   VK++ P  G +  SLV   P E +           + +V    ELWG V +V+N GA+V+VGAEV GFL +   P R +G     V     RLRV+A EVDR+  R+KLT +RPRSLPR
Sbjct:  108 KKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQI-KERQESGFK---WVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLV---PAEVET-AEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPR 348
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A7S2K1Z0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Z0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.690e-21
Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 3 
Query: 1032 LEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGET-FTPTARDVVATKDIILARVKFVDPTTGKLGLSLV------EDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIP--GRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 1565
            L   ++G+ V   V +++ +GA+VD+ + RD LLHV DM E  F    RD+++  D I  +VK+VD    KL +++V      +D     DL        I + +V    ELWG +++VT+ GAYV++GA V GFL   + P  G  +G      L+  +R+RV+   VD E  RIKLT  RP SLP
Sbjct:  239 LSAFEKGQEVNATVISLKPFGAYVDIGSSRDALLHVSDMSEEKFVEHPRDLLSPGDAIDVKVKYVDAENEKLAVTMVALPEESDDDXXXEDL--------IQLDEVDIDDELWGEIKKVTDYGAYVDLGAVVEGFLHFMDHPDYGLHQGAHPSAYLKAGQRIRVWVSNVDEELDRIKLTGNRPSSLP 417
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A7S2Q562_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q562_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.580e-21
Identity = 79/234 (33.76%), Postives = 118/234 (50.43%), Query Frame = 3 
Query:  930 FRNKKIYDIIKEKGRKTV---REATWATRWPRQVTR----------KLEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMG-ETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLV------EDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIP--GRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 1565
             RNKK  +  +EK R+     RE    +++ + VTR          KL DL  GE V G+V ++ S+GA+VD+ +E DGLLHV  +  + F    R  +A  D +  R+  +DP   KL L+++      E+      +        I + ++    ELWG + RVT+ GAY+ +GA V GF+   + P  G  KG    + +R   R+RV+  +VD    RIKLT  RP  LP
Sbjct:  108 IRNKKRREPAEEKKRRLYSQYREMQKKSKFDKYVTREKPTHDKTRTKLADLNPGETVPGRVISLTSFGAYVDIGSEVDGLLHVSQISRDEFVDHPRKFLAPGDDVEVRIVRMDPGAKKLQLTMLPEEVLNEENVLNKHMIDEDEDDRIQLDEIEVDDELWGEIRRVTDYGAYIELGAVVRGFMHFMDHPLFGEVKGAHPKEFMRVGDRVRVWVLDVDSTQQRIKLTANRPSGLP 341
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BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A7S4MUR0_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUR0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.700e-20
Identity = 67/183 (36.61%), Postives = 99/183 (54.10%), Query Frame = 3 
Query: 1032 LEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMG-ETFTPTARDVVATKDIILARVKFVDPTTGKLGLSLV--EDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIP--GRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 1565
            L D+Q G  + G V ++ ++GA+VDV  E DGLLHV  +  + F    R+V+   D +  RV    P   K+ L+++  E+ P   D        PI + +++   ELWG + RVT+ G YV +GAEV GFL   + P  GR  G      +    R+RV+  ++DRE +R+KLT  RP  LP
Sbjct:  172 LSDIQIGSTLPGTVISLTNFGAYVDVGTECDGLLHVSQITRKVFVQHPREVLRPGDEVEVRVVRSSPELKKMQLTMLPTEEEPNPDDESQ---EDPILLDELAVDDELWGEIRRVTSYGGYVELGAEVDGFLHFMDHPEFGRVPGAPPGDYMAVGDRVRVWVSDLDREKVRVKLTANRPEGLP 351
[Close]
BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Match: A0A6U1NXG4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1NXG4_CYCTE)

HSP 1 Score: 100 bits (248), Expect = 4.330e-20
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 3 
Query: 1032 LEDLQEGEWVKGKVRNVESYGAWVDVNAERDGLLHVKDMGET-FTPTARDVVATKDIILARVKFVDPTTGKLGLSLVEDGPREGDLPLPPP---RPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIP--GRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPASAL 1589
            L  L  G  ++G V ++ ++GA++DV  E DGLLH+  +  T F     DV+   D I   +K       KL L+L+E+  +E + P          I ++++S   ELWG ++RVT+ G+YV +GA V GFL   + P  G   G      +   +R+RV+  +VD E  RIKLT KRPR LP  GP  +L
Sbjct:   27 LTALVPGSKMRGTVISLTNFGAYIDVGTECDGLLHISQISNTDFIRHPSDVMKPGDEIEVIIKRKSNEQKKLHLTLLEE--KEENTPDQDEFDDEDRIPLKEISVDDELWGIIQRVTDYGSYVELGAAVTGFLHFMDHPYFGEVAGAHPSTYMEAGQRVRVWVSDVDLEKNRIKLTAKRPRDLP--GPRRSL 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.89.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCP4_9PHAE3.820e-19566.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK22_ECTSI1.940e-19283.8030S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
A0A835YZW7_9STRA1.470e-5446.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5P7_9STRA6.500e-2939.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2EYN2_TRICV1.070e-2641.27Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W7TP35_9STRA7.340e-2335.7430s ribosomal protein s1 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2K1Z0_9STRA4.690e-2137.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2Q562_9STRA9.580e-2133.76Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4MUR0_9STRA3.700e-2036.61Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A6U1NXG4_CYCTE4.330e-2036.46Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:316563..322548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1128421.JAGA01000003_gene3518
Preferred nameispH
PFAMsLYTB,S1
Model size2788
Max annot lvl2|Bacteria
KEGG rclassRC01137,RC01487
KEGG koko:K02945,ko:K03527
KEGG ReactionR05884,R08210
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko03010,map00900,map01100,map01110,map01130,map03010
KEGG ModuleM00096,M00178
Hectar predicted targeting categorysignal peptide
Exons6
Evalue3.05e-12
EggNOG OGsCOG0539@1|root,COG0539@2|Bacteria,2NNTP@2323|unclassified Bacteria
Ec32 ortholog descriptionRNA-binding domain, S1
Ec32 orthologEc-06_007880.1
EC1.17.7.4
DescriptionRibosomal protein S1
Cds size1770
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.89.2prot_P-littoralis_Contig83.89.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 317525..322492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791690.839269-UTR-P-littoralis_Contig83:316562..3175241680791690.839269-UTR-P-littoralis_Contig83:316562..317524Pylaiella littoralis U1_48UTRP-littoralis_Contig83 316563..317524 -
1680791690.9327238-UTR-P-littoralis_Contig83:322492..3225481680791690.9327238-UTR-P-littoralis_Contig83:322492..322548Pylaiella littoralis U1_48UTRP-littoralis_Contig83 322493..322548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791690.8532548-CDS-P-littoralis_Contig83:317524..3179021680791690.8532548-CDS-P-littoralis_Contig83:317524..317902Pylaiella littoralis U1_48CDSP-littoralis_Contig83 317525..317902 -
1680791690.8639987-CDS-P-littoralis_Contig83:318311..3184971680791690.8639987-CDS-P-littoralis_Contig83:318311..318497Pylaiella littoralis U1_48CDSP-littoralis_Contig83 318312..318497 -
1680791690.8786082-CDS-P-littoralis_Contig83:318772..3189471680791690.8786082-CDS-P-littoralis_Contig83:318772..318947Pylaiella littoralis U1_48CDSP-littoralis_Contig83 318773..318947 -
1680791690.894863-CDS-P-littoralis_Contig83:319348..3194291680791690.894863-CDS-P-littoralis_Contig83:319348..319429Pylaiella littoralis U1_48CDSP-littoralis_Contig83 319349..319429 -
1680791690.9056199-CDS-P-littoralis_Contig83:320474..3205761680791690.9056199-CDS-P-littoralis_Contig83:320474..320576Pylaiella littoralis U1_48CDSP-littoralis_Contig83 320475..320576 -
1680791690.9196842-CDS-P-littoralis_Contig83:321644..3224921680791690.9196842-CDS-P-littoralis_Contig83:321644..322492Pylaiella littoralis U1_48CDSP-littoralis_Contig83 321645..322492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.89.2

>prot_P-littoralis_Contig83.89.2 ID=prot_P-littoralis_Contig83.89.2|Name=mRNA_P-littoralis_Contig83.89.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=590bp
MTRRCLPVSNVLVAVCVVTGGSCGSSVDGAPTVVTGFLAPWQPSTSWGRE
AHTLASSSSGSTSTSTVTASGLSTSSRRRRRRHPCWLGASRRLDSSDGKA
GVTAAATGNIRPLLLLSPLAPSSSTRRAAAAATTLAARPPTSTEMDAEWD
GILARDDDDDDDDDDDADEKEEDDDEDFDAAMMLTDEELLATDATEGGFL
GGAGEDDDEEGEEGEEGLMSRGGGGGGGGGRKKERVWYDSYKERMKAEKA
KEAAWQEKRKTFSKAHNDYLDESQHNREVAAARREKYTKKFFRNKKIYDI
IKEKGRKTVREATWATRWPRQVTRKLEDLQEGEWVKGKVRNVESYGAWVD
VNAERDGLLHVKDMGETFTPTARDVVATKDIILARVKFVDPTTGKLGLSL
VEDGPREGDLPLPPPRPPISVRDVSRGAELWGYVERVTNMGAYVNVGAEV
PGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPR
SLPRCGPASALASDDHTEDFEYDDTRTRYTDEDGWDRDEYDGGEEEEDEE
GEEFDEFDDDDDDDEGENWFYPDRGQVIPAPVESEAAAQ*
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mRNA from alignment at P-littoralis_Contig83:316563..322548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.89.2 ID=mRNA_P-littoralis_Contig83.89.2|Name=mRNA_P-littoralis_Contig83.89.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5986bp|location=Sequence derived from alignment at P-littoralis_Contig83:316563..322548- (Pylaiella littoralis U1_48)
CGACAACACAACACAGCAGTAAGGCGCCGACGCAGCCCGCCGACGTAAAG
CACATCATGACTCGGCGATGCTTGCCTGTCAGTAATGTACTGGTTGCAGT
CTGCGTAGTGACAGGTGGAAGCTGTGGTAGTAGTGTAGATGGCGCCCCTA
CCGTCGTCACCGGTTTCTTGGCCCCTTGGCAACCTTCAACTTCGTGGGGT
CGAGAGGCCCACACGCTTGCCAGCAGCAGCAGCGGCAGCACAAGCACCAG
TACAGTCACAGCGTCTGGATTGTCTACTTCCTCCCGGCGTCGCCGGCGAA
GACATCCCTGCTGGTTGGGTGCTTCAAGAAGGTTGGATAGCAGTGATGGT
AAGGCCGGCGTAACAGCAGCAGCAACTGGCAATATTCGACCTCTGCTGCT
GTTGTCGCCCCTTGCACCATCGTCGTCGACACGACGAGCAGCAGCGGCAG
CAACGACGCTTGCTGCCCGCCCTCCCACCTCAACAGAAATGGATGCGGAA
TGGGACGGGATTCTCGCTAGAGATGACGACGACGACGACGACGATGACGA
CGACGCGGACGAGAAAGAAGAAGATGATGATGAAGATTTTGATGCAGCCA
TGATGCTCACCGACGAAGAACTGCTTGCGACGGATGCCACCGAGGGAGGC
TTCTTGGGCGGTGCGGGGGAGGACGACGATGAGGAGGGGGAGGAGGGGGA
GGAAGGGTTGATGTCGAGAGGAGGTGGGGGAGGCGGTGGGGGGGGGCGCA
AGAAGGAGCGGGTGTGGTACGACAGCTACAAGGAGCGCATGAAGGCGGAG
AAGGCAAAGGAGGCCGCCTGGCAGGAGAAGCGCAAAACTTTCTCGAAGGC
ACACAACGACTACCTCGACGAGTCGCAGCATAACAGAGAAGTCGCAGCCG
CCAGGTAACCAACGTGAAGTAATTACTGCTGTACAGAGCAGGACCTCCAT
GGCCTATCAGTACGGCGGAACGCACGCGTCATACCAGAGAGCCAGCCTGT
CACGAGTTGTCCGTCGATCAGGTTGATGTCACCAACCTGTGGGCGGCGGG
TTGCCCTCCGAGATTTACAGATTTGTCGCAATTTTAATTTTGCATCCACG
CTCCGCCCGCTGGTGTGTGCCGCAACCTTCCTTGTGGTTTGGCCCAAAAG
GGTTACATATGTTGGGTTTGCGCAGAACGAGCAGCTGTGATACTCAGAGT
AGCTACAGGTGATTTCCCGTTTCTTTCTGGATGAGGTTGTGTGTCTCTTG
GGTACACTGCAGTGTGCGTGCCGACATGAATTGATAAGCAAGACAGCGCA
CCACCATACGGGGAACACCCTCAAATACCTGCAGAGCTTGAGGATGTGCA
TCGATTTTGATCCATAACTCGGGTATGATATCGCCGCATGCTACAGCAGC
AGTGGCTCTTACAAATCAAGCGTTCAGCTCAGGCTCTCCCTCCTGTTATG
GTCGATTCAATGAGGTACTCATCATGTCAGTGACAGGGGTTGTGGGCTGT
ATTAAAAAAAAGAGGCTCGCGCCCCGCCCACGGAACTCCCTGTGAGGGAG
TTTTGCAGACCTGATTTTAACCACAACCTCACACAGAACTTGTTTTGTCT
GCTGTTTTTTTACCACCACCCCTGAACTTGCCTGCCTCCACGGCTTTTGC
CTGCACTACAACTTGGATTTCATACTCCGGCTTGGCATACTAGAGCTCAT
ATCGTTTAGTACAACGTTACGCTCCAGTGTTGTGCACGTTATGTTCTGGA
TCCGCTGGGCACTCTTTGGCGCCAGCAGCATCTGTAGATTACTTTTACCA
CTATCGCTGTCTCGCATGTGCACGGCCATTGCGTTTGCTCTCCCTAGGGT
TGGCCTTCACTGCGCTTGATGCAGCCCTTGCCCGTATCGCTGTACACGTT
GTTTGTTTGTGCCGTGGGGACGATATAAATACCACATCAACAAATTCATG
TATTTTTTGCAATGCATCACAGGCGAGAGAAGTACACGAAAAAGTTCTTC
AGGAATAAGAAGATCTACGATATCATCAAGGAGAAAGGCAGGAAGACGGT
CAGGGAGGCTACCTGGGCAACCAGGTCAGCACCATATAGATACTGCATGT
TTACCTCTCGGTGATGCTCTCGCGGTACCAGCAAGAGATATCATATTGAG
CAAAGAGGACAGCACTACGAAAATTCTGCACATGATACCCGCGCTATTGC
TTGCTTGGTGCACATAATAAAATCGTTAGAAGAGAAAGCTGCCGCACCGA
TCTATTAGATTTGACTGCAAGAGAACCTGTGTGTTTATGGTGCACGTTTG
GTGTGATGTACGATTTGATATTTCGTCCGTGCGTGCCAAGAAGAGCCCGG
GAGGCATTGCTCTTTTCGTGTCGTGACATGTCTTAAGAAATTTGCCAACC
GTTCACACATTGGCAAGATAAGAATAGGTACAAAGACGCCCTCCTGCTCT
TTCATACTCCCTCTCACAGCAGCAGCTCCAAAAAAAAATCCGGATTAACT
CACGTACGACGCATGCTGAACGTCGCATGTAATTTATCCTCTTCTGTGGT
GGCTAACTCCGGCCAACGTACAGTTTTTGGAAGGTCAAACCCGGGTTGTA
AGCACCGCGAACTCTGCCGACGCGCAGAACGGGAAAGAGAGTGTGGAGGG
GGGGGGTAACGTAGAGCATTTAATGGCTAGATAAAGTGATTTCGTTGCAG
AAGAGCCTTGACACCGAGCTTCTACTCTGGACTACCTCACACCAGTGCTG
CTGGAGCATTCTGTGCTGCCGTGCTGCTATTTTCTCCATCCCGTCAGCGG
TGTGGCGTTTTTGTCGATCACACGGGACCACATCGCTGACTTGGAGCCGT
CCCTTGTAACCACACCCTCTCTCCGGTCCAATTTGACGCCCTTGGTCTTC
GCTCCCTCCGTTGTCTGCCTCCACACCGTTCTACCCTAAACAAGCGCACT
ACTGCCCCCACACACCCATCTACTGACTCACTCTCTTGATGACCGCCCGC
CCCACGCGATCCCTCTCCTTTTTCAACCGCTTGGTTCGTCTCTTTGGTCG
GTATGGTTTGTCTTGCACGCGTGTGCTCGTGTGTTCTGTGTGTGTGTGTG
TTTTTTTTTTTACTGAAAGGTGGCCGCGGCAAGTGACTCGGAAGCTTGAA
GATCTGCAAGAGGGGGAATGGGTCAAGGGCAAGGTCCGCAACGTCGAGAG
GTGTGAAAGTAGAGATTATATACACTCGCATATGTCGTGCATGCCTGTCA
TTGGTCGTTGTTATATCGTGTCTCGGTGTATTTGAGGGCCCGCTCTGATC
ATACCGGGGCAGCCGCAGGGGGGTGGGGGTGGGGTCGAGGAGGGCAAGAA
GCTTTTTGCGCATGGTCGAGCGACGCACAAATATTGGATTAAATAAATGT
CTGTTTTAAAACCGCATCGATCCTGTTGTTTGGCTCTCGTCTTCTTTGTA
CCAAGGCCAACAATGTTTTCAACAACTCCATCAACAACAACAACTTCCAC
CACCACCACCACCACCACCGACGTCAACAACCGCACTAATCACGACCGTC
CTTCAAAACAACAACGACAACTCGCCTAAACTGTGCAATACTCCACACAA
GCTATGGGGCTTGGGTGGACGTGAACGCGGAGCGCGACGGCCTGCTGCAC
GTGAAGGATATGGGAGAGACCTTCACGCCTACCGCTAGGGACGTGGTGGC
CACAAAGGACATCATCCTCGCCCGAGTAAAGTTCGTCGACCCGACAACCG
GAAAGCTCGGGCTGTCTCTGGTAGAGGTGCGTGTGTTCTTTTGTGTGTGT
GTGCGCGCGCCCATGCACACCGCGATACTTACTGCTGTGTTCCGATGTGT
AGATACGGTTACGTGACCGGCCGATGATCCTAGAACGAAATGGAAGTAAG
ACACATACGTCCGTGTCCTAAACTAGTTGAAGTCATGGTGGTCTCCCGTG
GCAGGCCCGGGTTTTGATGTAGTATGCTACATATTTCGATGCTGTGTGTT
ACACTTGTTTTACCTTGTGTACCCCCCTCCCCTCCCCTCCACCACCACCA
GGACGGCCCGCGAGAGGGAGACTTGCCGCTTCCCCCTCCGCGACCGCCGA
TATCGGTGAGGGACGTGTCGCGCGGCGCGGAGCTGTGGGGGTACGTTGAG
CGGGTGACGAACATGGGCGCGTACGTGAACGTGGGGGCGGAGGTGCCCGG
CTTCCTGCTCCTGAAGGAGATACCCGGCAGGCCGAAGGTCGGTCGCTTCT
TGGGAGAGGTCTTGGGTGTTGGGGGTGGTACCTCGTGTGTGTGGCATCTG
CTTATCATTTTGCAGGGCTCCCGGTCGTCAATGGTACGTATTGATGTGCA
CTTGTCGTTTTTGGTGTTGGCTCTCCGGTGGTGTTGGTGTCGTGTTTTTG
TAGCTATGTGTGTGTGTGTTTTGTGGTGTGTTGCGCGCTGTCGTTGTCGA
ATCAACGTGGTGTACTGTAGATTTTGAGCTGTCTGCACCACGCCCATCCA
GTCGCTGGCCGACCTCTGCTTCTGGTTTCAACTTGCATGTCTCGTTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCCTTCCTTCCTTCCTTTT
GCTTTATACCGACCGTAACACAACCACCGGTAACAAACACAAGCAGGGGC
TGAGCGCGCCCCAAGTCCTCCGCAGGAACAAGCGGCTCCGCGTGTACGCG
AGAGAGGTGGACCGCGAGGGCCTCCGCATCAAGCTCACCTGCAAGCGCCC
GCGGAGCCTTCCTCGCTGCGGCCCCGCCTCGGCGCTGGCGAGCGACGACC
ACACCGAGGACTTCGAATATGACGACACGCGAACCCGTTACACCGACGAG
GACGGCTGGGATAGGGATGAATACGATGGTGGCGAAGAGGAAGAAGACGA
GGAGGGCGAAGAATTTGACGAGTTCGACGACGATGATGATGACGACGAGG
GAGAGAACTGGTTCTACCCCGACCGGGGGCAGGTCATTCCGGCCCCCGTG
GAAAGTGAAGCTGCCGCTCAGTAATTGGATGGATCGGTGGATGATGGATG
CGAACAGTCACGAGATTGGCGTGGAGGCAGGCAAAGAGCGGCAAAGGCGA
CGTCGGTGGTTGGAATGGTGAATATGTACAAGGGTTGCGGCGGCGGCGCC
GGCAACGGCGTTGTTGGCGGCAGCGGCTTTGGGGAAAAAAAATCCTGGAG
GGGTGGTAAAGGAAGGGGGGTTCGGTCGATGTGTTCTCGATTTCGCGAGA
GCGTGCAGTGCTTGTACCACTTTTGTCATGTTCTGGTTGTTTTCAGCAGC
TGTGGTTGAGAAGCGCTGTCGCCAGCGTTTGGGGAGTAAGACATGCTGTC
GTTCTTGCCGCCGATGAGATCATTTACTAGTACCTTGTTTGGCGGAGCCA
AAAGCGACGGCTTGTTGTTTTTTGGGCTGGTGGGTGCTGCTTCTCCGAAC
GCGTACTTTAGTCGGGTATGGGTCGTCGTGCGCTCGTCCACGCTGAATTT
ATAATTGCGCTGTCACGCCTACGTGCCCCACGAAGGCGCTTTGCACGGAC
CGAGGCGCCCACCTAGCAGAATGGTGTCGTAACTTCGACCTCAACTTTTT
CAATGGTGTGTGTTTACCGTATGTGTGTGTTTTTGCTTTGACGATCCAAA
AAACCGTGCCCATTTTTGCATTACTCACCTTAGAAAACATATTTGCAATA
TGAATGATGTGCTGTGGGGCGGCTTTCGGCAAGGAAGATATAAAATGGAG
TGGGCTGCTGCTTCCTGTCCAGTCCGTGACTCGGTTGATACGGAAGTCGT
TGACAGAAGAGTCGACGGAATCGACACCTGTTGAGCTGGGTGCGCTTGCC
TTCCCGGTACGACAGCGGCCCAATGATCCTGAGTTGCTTAGGGTAAAAGC
TTGCACACCCCTCAGCTGTTGAGCTGTGTATTGGTAAAGAGAGCTCTACT
TGAGCGGGACGAGTCGAGAAAACGGCATTGTGACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:316563..322548-

>mRNA_P-littoralis_Contig83.89.2 ID=mRNA_P-littoralis_Contig83.89.2|Name=mRNA_P-littoralis_Contig83.89.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1770bp|location=Sequence derived from alignment at P-littoralis_Contig83:316563..322548- (Pylaiella littoralis U1_48)
ATGACTCGGCGATGCTTGCCTGTCAGTAATGTACTGGTTGCAGTCTGCGT
AGTGACAGGTGGAAGCTGTGGTAGTAGTGTAGATGGCGCCCCTACCGTCG
TCACCGGTTTCTTGGCCCCTTGGCAACCTTCAACTTCGTGGGGTCGAGAG
GCCCACACGCTTGCCAGCAGCAGCAGCGGCAGCACAAGCACCAGTACAGT
CACAGCGTCTGGATTGTCTACTTCCTCCCGGCGTCGCCGGCGAAGACATC
CCTGCTGGTTGGGTGCTTCAAGAAGGTTGGATAGCAGTGATGGTAAGGCC
GGCGTAACAGCAGCAGCAACTGGCAATATTCGACCTCTGCTGCTGTTGTC
GCCCCTTGCACCATCGTCGTCGACACGACGAGCAGCAGCGGCAGCAACGA
CGCTTGCTGCCCGCCCTCCCACCTCAACAGAAATGGATGCGGAATGGGAC
GGGATTCTCGCTAGAGATGACGACGACGACGACGACGATGACGACGACGC
GGACGAGAAAGAAGAAGATGATGATGAAGATTTTGATGCAGCCATGATGC
TCACCGACGAAGAACTGCTTGCGACGGATGCCACCGAGGGAGGCTTCTTG
GGCGGTGCGGGGGAGGACGACGATGAGGAGGGGGAGGAGGGGGAGGAAGG
GTTGATGTCGAGAGGAGGTGGGGGAGGCGGTGGGGGGGGGCGCAAGAAGG
AGCGGGTGTGGTACGACAGCTACAAGGAGCGCATGAAGGCGGAGAAGGCA
AAGGAGGCCGCCTGGCAGGAGAAGCGCAAAACTTTCTCGAAGGCACACAA
CGACTACCTCGACGAGTCGCAGCATAACAGAGAAGTCGCAGCCGCCAGGC
GAGAGAAGTACACGAAAAAGTTCTTCAGGAATAAGAAGATCTACGATATC
ATCAAGGAGAAAGGCAGGAAGACGGTCAGGGAGGCTACCTGGGCAACCAG
GTGGCCGCGGCAAGTGACTCGGAAGCTTGAAGATCTGCAAGAGGGGGAAT
GGGTCAAGGGCAAGGTCCGCAACGTCGAGAGCTATGGGGCTTGGGTGGAC
GTGAACGCGGAGCGCGACGGCCTGCTGCACGTGAAGGATATGGGAGAGAC
CTTCACGCCTACCGCTAGGGACGTGGTGGCCACAAAGGACATCATCCTCG
CCCGAGTAAAGTTCGTCGACCCGACAACCGGAAAGCTCGGGCTGTCTCTG
GTAGAGGACGGCCCGCGAGAGGGAGACTTGCCGCTTCCCCCTCCGCGACC
GCCGATATCGGTGAGGGACGTGTCGCGCGGCGCGGAGCTGTGGGGGTACG
TTGAGCGGGTGACGAACATGGGCGCGTACGTGAACGTGGGGGCGGAGGTG
CCCGGCTTCCTGCTCCTGAAGGAGATACCCGGCAGGCCGAAGGGGCTGAG
CGCGCCCCAAGTCCTCCGCAGGAACAAGCGGCTCCGCGTGTACGCGAGAG
AGGTGGACCGCGAGGGCCTCCGCATCAAGCTCACCTGCAAGCGCCCGCGG
AGCCTTCCTCGCTGCGGCCCCGCCTCGGCGCTGGCGAGCGACGACCACAC
CGAGGACTTCGAATATGACGACACGCGAACCCGTTACACCGACGAGGACG
GCTGGGATAGGGATGAATACGATGGTGGCGAAGAGGAAGAAGACGAGGAG
GGCGAAGAATTTGACGAGTTCGACGACGATGATGATGACGACGAGGGAGA
GAACTGGTTCTACCCCGACCGGGGGCAGGTCATTCCGGCCCCCGTGGAAA
GTGAAGCTGCCGCTCAGTAA
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