mRNA_P-littoralis_Contig12.161.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig12.161.1
Unique Name	mRNA_P-littoralis_Contig12.161.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 4.100e-70
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 3

Query:  168 TTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            TTPQGTKTTKAFAE GQKVVG+MRSNSREN TVVATIS DGHTWAPTIIF GQRLQADWFVERNGPEGARYTCT SSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLD HASHV
Sbjct:  227 TTPQGTKTTKAFAESGQKVVGAMRSNSRENTTVVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHV 343

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 9.670e-70
Identity = 109/118 (92.37%), Postives = 109/118 (92.37%), Query Frame = 3

Query:  165 GTTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            GTTPQGTKTTKAFAE GQKVVGSMRSNSREN TVVATISADGHTWAPTI F  QRLQ DWFVERNGPEGARYTCT SSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILL D HASHV
Sbjct:  171 GTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQVDWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLHDGHASHV 288

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.150e-67
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 3

Query:  165 GTTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            GTTPQGTKTTKAFAE GQKVVGSMR+NSREN TVVATISADGHTWAPTIIF GQRLQAD FVERNGPEGAR+TCT SSFMQGDVF+ YLKDFHKQLGDRGLLDGKPHILLLD HASHV
Sbjct:  171 GTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQADCFVERNGPEGARHTCTDSSFMQGDVFMNYLKDFHKQLGDRGLLDGKPHILLLDGHASHV 288

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.520e-65
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 3

Query:  171 TPQGTKTTKAFAEPGQKVVGSMRSNSRENAT-VVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            TPQGTKTTKAFAE GQKVVGSMRSNSREN T VV TISADGHTWAPTIIF G RLQADWFVERNGPEGARYTCT SSFMQGDVFIAYLKDFHKQ G+RGLLDGKPHILLLD H+SHV
Sbjct:  148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHV 264

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 4.410e-61
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 3

Query:  186 KTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            +T +AFAE GQKVVGSMRSNSREN TVVATISADGHTWAPTIIF GQRLQADWFVERNGPEGARYTCT S F Q +VFIAYLKDFHKQLGDRGLLDGKPHILLLD HASHV
Sbjct:  146 RTRQAFAESGQKVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGPEGARYTCTDSFFTQENVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHV 256

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 5.660e-59
Identity = 97/118 (82.20%), Postives = 101/118 (85.59%), Query Frame = 3

Query:  165 GTTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            G TPQGTKT KAFAE GQKVV SMRSNS EN TVV TISA+G TWAPTIIF GQRLQ DWF ERNGP+ ARYTCT SSFMQGDVFI YLKDFHKQL DRG+LDGKPH L+LD HASHV
Sbjct:  166 GPTPQGTKTMKAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHV 283

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5KHG4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG4_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.650e-57
Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 3

Query:  165 GTTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            GTTPQGTKT KAFAE GQKVV SMRSNSRENATVV TIS +G TWAPTIIF GQRLQ DWF ERNGP+ ARYTCT SSFMQGDVFI YLKDF+KQL DRG+LDGKPHIL+L  HAS V
Sbjct:  109 GTTPQGTKTMKAFAEVGQKVVESMRSNSRENATVVTTISTNGVTWAPTIIFKGQRLQLDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFYKQLDDRGVLDGKPHILVLGGHASLV 226

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.660e-55
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 3

Query:  195 KAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            KAFAE GQKVV SMRSNSREN TVV TISA+G TWAPTIIF GQRLQ DWF ERNGP+ ARYTCT SSFMQGDVFI YLKDFHKQL DRG+LDGKPHIL+LD HASHV
Sbjct:    2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHV 109

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5K3Q3_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q3_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.380e-55
Identity = 92/117 (78.63%), Postives = 98/117 (83.76%), Query Frame = 3

Query:  168 TTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            TTPQGT T KAFAE GQKVV SMRSNSR N TVV TISA+  TWAPTIIF GQ+LQ D F ERNGP+ ARYTCT SSFMQGDVF+ YLKDFHKQL DR +LDGKPHIL+LD HASHV
Sbjct:  101 TTPQGTTTMKAFAEAGQKVVASMRSNSRGNTTVVTTISANDATWAPTIIFKGQQLQPDCFAERNGPKDARYTCTNSSFMQGDVFVKYLKDFHKQLDDRSVLDGKPHILVLDGHASHV 217

[Close]

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 5.040e-55
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 3

Query:  219 KVVGSMRSNSRENATVVATISADGHTWAPTIIF*GQRLQADWFVERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDDHASHV 518
            KVVGSMRSNSREN TVVATISADGHTWAPTIIF GQRLQADWFVERNG EGA+YTCT  SFMQGD+FIAYLKDFHKQL DRGLLDGKPHILLLD HASHV
Sbjct:  203 KVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGLEGAKYTCTDYSFMQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHV 302

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig12.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KN20_9PHAE	4.100e-70	94.02	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KJ62_9PHAE	9.670e-70	92.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFM5_9PHAE	2.150e-67	91.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYS0_9PHAE	3.520e-65	90.60	DDE-1 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5KNQ5_9PHAE	4.410e-61	89.19	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JBS6_9PHAE	5.660e-59	82.20	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KHG4_9PHAE	1.650e-57	82.20	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KGL1_9PHAE	1.660e-55	84.26	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K3Q3_9PHAE	4.380e-55	78.63	DDE-1 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5JRA3_9PHAE	5.040e-55	91.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig12	contig	P-littoralis_Contig12:687899..689203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	520
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	177

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789511.0978289-UTR-P-littoralis_Contig12:687898..688041	1680789511.0978289-UTR-P-littoralis_Contig12:687898..688041	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig12 687899..688041 +
1680789511.132758-UTR-P-littoralis_Contig12:689003..689203	1680789511.132758-UTR-P-littoralis_Contig12:689003..689203	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig12 689004..689203 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789511.109227-CDS-P-littoralis_Contig12:688041..688063	1680789511.109227-CDS-P-littoralis_Contig12:688041..688063	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig12 688042..688063 +
1680789511.1211634-CDS-P-littoralis_Contig12:688848..689003	1680789511.1211634-CDS-P-littoralis_Contig12:688848..689003	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig12 688849..689003 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig12.161.1	prot_P-littoralis_Contig12.161.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig12 688042..689003 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig12:687899..689203+
coding sequence from alignment at P-littoralis_Contig12:687899..689203+

protein sequence of mRNA_P-littoralis_Contig12.161.1

>prot_P-littoralis_Contig12.161.1 ID=prot_P-littoralis_Contig12.161.1|Name=mRNA_P-littoralis_Contig12.161.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MGSSPRRGTTPQGTKTTKAFAEPGQKVVGSMRSNSRENATVVATISADGH
TWAPTIIF*

mRNA from alignment at P-littoralis_Contig12:687899..689203+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig12.161.1 ID=mRNA_P-littoralis_Contig12.161.1|Name=mRNA_P-littoralis_Contig12.161.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig12:687899..689203+ (Pylaiella littoralis U1_48)
GGGATCCAGAGAAGGGCGGGGAAAGATTGGCTTGCGGGCTTCCTTCGTGG
GCACCCACGGCTGGCGGAGCGCTCGACCCGCATCTACGAGGCAAACAGGA
TCACCGAAGAAGAGGAGCCTCGCATGGTGTAGTTCTACGAGAGATGGGCA
GCTCTCCTCGACGAGGTCAAACCGGAGGCCAACCACGTGCACAACACGGA
CGATTCGCTCGTAGACTCTAGGTCTAGACTAGTCAAGTGTAGATACAGCA
GTAGTAGAAGTGTGGCGGCAGTAGAAACTGCGCGGGTGACTGCTGTGCAA
AGACCACGAAACATGTCCCACGAAAAATATCAGGCAGAGTTCTGCCCCCT
TGCGGCGTTATTTTGGCCTCCTCATGTCTACAGAGGCCGTGCTCCCGCAT
TCCTGCTCAAAATTGCCAAAATTGCCGCTAACTCTGGTCTAGAGTACCGT
AGGCTACAGCAGTAGTTCCAGACACAAAAGTAGTACGTACAGCACTGGTT
CCAGACAATGTACTGCTGTAGACTATACGTAGTAGTCTAAAATTCAATAT
TTTCAGAGCTGCATCGCATCGTCTTCAGCTGGTAGTCCGAGGGAACCTGC
GGCGACGAACGTGTAAGTTAGTCTAGGGGAGCGATGTTGAGTAGATGCAT
GTGCCAACACATGAAAGAATCTAGACTAGTCTACAGCACCCTGCTTTTGC
TCTCCCGGTTGCCTCGTCCAGCTACCGCCACAATGACGGTAGACTGCGTA
GGTTGAAAGCCCTCGCCGCACGAAAATAAATGAAAAAGAGCCACCGCGTG
TCCCCCCCCCGTCCACCCCCGTTGCTTGGCGCGCACGATATTGACTGTAA
ATGTTTGGCTGCGTGCGTGCACTACTGCTGGATATTTTGACTACCCATTA
GACTAGCCTAACGCCCCCCCCCGACCCTCACATACGCGTTCCCGTTGCAG
GTACCACCCCGCAAGGAACCAAGACGACGAAGGCGTTTGCGGAACCAGGG
CAGAAGGTGGTTGGTTCGATGCGCTCCAACTCGCGAGAGAACGCCACCGT
GGTCGCTACCATCAGCGCTGATGGTCACACCTGGGCACCAACCATTATCT
TCTAAGGGCAACGACTTCAGGCCGATTGGTTTGTAGAGCGAAACGGCCCG
GAGGGTGCGAGGTACACCTGTACGGGTTCTTCGTTCATGCAGGGAGACGT
ATTCATCGCCTACTTGAAGGATTTCCACAAGCAGCTCGGCGACCGAGGGT
TGCTCGACGGAAAACCCCACATACTCTTGCTCGATGACCATGCATCACAC
GTGAG

Coding sequence (CDS) from alignment at P-littoralis_Contig12:687899..689203+

>mRNA_P-littoralis_Contig12.161.1 ID=mRNA_P-littoralis_Contig12.161.1|Name=mRNA_P-littoralis_Contig12.161.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig12:687899..689203+ (Pylaiella littoralis U1_48)
ATGGGCAGCTCTCCTCGACGAGGTACCACCCCGCAAGGAACCAAGACGAC
GAAGGCGTTTGCGGAACCAGGGCAGAAGGTGGTTGGTTCGATGCGCTCCA
ACTCGCGAGAGAACGCCACCGTGGTCGCTACCATCAGCGCTGATGGTCAC
ACCTGGGCACCAACCATTATCTTCTAA