mRNA_P-littoralis_Contig83.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.23.1
Unique NamemRNA_P-littoralis_Contig83.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig83.23.1 vs. uniprot
Match: D8LK41_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK41_ECTSI)

HSP 1 Score: 521 bits (1342), Expect = 1.010e-174
Identity = 288/393 (73.28%), Postives = 306/393 (77.86%), Query Frame = 2 
Query:  245 MAHD-PADLCGIILYTFFFGLVCFRIQPFLADGCSLSSTDRIKLAFHVCLVLSALLEIVHYAIEIAFRGSVLSGYACHLVGLWLSLVAFSLVIVLWSNTLNPPRKSVQRGASDGDGDDDG-------PAGWKCCGTTRISAAAKVVCAIDAIVAVSTVIVLWTGSVPAYSRPYLILMVIHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNRLLFELLARWVSGLIPGCALLHIMCKTKKPGEDRPPVDRTRLSVVNEDQPLNEPLLPTHGAGFTTTPGYSIAKKSLASGSRGPSPSNRNARPGAGRVGGRGGRIDGVQAAGN-----DSFVYQIVRSQRERTETTI 1384
            M HD  AD+CGI+LYT FFGLVC R +PFL D  SLSSTDRIKLAFHVC+  SALLEIVHYAIE+AFRGSVLSGYACHLVGLWLSLV+FSLVIVLWSNTL+PP                        PAGW+CCG TRIS AAK VCAIDAIVA++TV+VLWTGSVPAYSRPYLILMV HSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFL+RVAVLSSALFVRSRHRAE+MNRLLFE+LARWVSGLIPG ALLHIMCKTKKPGEDRPP D+ RLSVVNEDQPLNEPLLPTH  G     GY    K   +GS G   S+ N+R G                        DSF YQIVRSQRERTETTI
Sbjct:    1 MPHDYSADVCGIVLYTLFFGLVCIRTRPFLTDRRSLSSTDRIKLAFHVCINTSALLEIVHYAIELAFRGSVLSGYACHLVGLWLSLVSFSLVIVLWSNTLHPPXXXXXXXXXXXXXXXXXXXXXXXEPAGWRCCGKTRISIAAKFVCAIDAIVALATVVVLWTGSVPAYSRPYLILMVTHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRHRAEDMNRLLFEVLARWVSGLIPGVALLHIMCKTKKPGEDRPPPDQMRLSVVNEDQPLNEPLLPTHHGGG----GYVSMAKKKPNGSAGRGTSS-NSRSGXXXXXXXXXXXXXXXXXXXXXXXXDSFAYQIVRSQRERTETTI 388
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK41_ECTSI1.010e-17473.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:65859..79168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2816
Hectar predicted targeting categoryother localisation
Exons8
Cds size1143
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.23.1prot_P-littoralis_Contig83.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 67288..78924 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791688.002527-UTR-P-littoralis_Contig83:65858..672871680791688.002527-UTR-P-littoralis_Contig83:65858..67287Pylaiella littoralis U1_48UTRP-littoralis_Contig83 65859..67287 -
1680791688.1276636-UTR-P-littoralis_Contig83:78924..791681680791688.1276636-UTR-P-littoralis_Contig83:78924..79168Pylaiella littoralis U1_48UTRP-littoralis_Contig83 78925..79168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791688.0128932-CDS-P-littoralis_Contig83:67287..675611680791688.0128932-CDS-P-littoralis_Contig83:67287..67561Pylaiella littoralis U1_48CDSP-littoralis_Contig83 67288..67561 -
1680791688.029863-CDS-P-littoralis_Contig83:68013..681511680791688.029863-CDS-P-littoralis_Contig83:68013..68151Pylaiella littoralis U1_48CDSP-littoralis_Contig83 68014..68151 -
1680791688.0397124-CDS-P-littoralis_Contig83:68808..689431680791688.0397124-CDS-P-littoralis_Contig83:68808..68943Pylaiella littoralis U1_48CDSP-littoralis_Contig83 68809..68943 -
1680791688.0647388-CDS-P-littoralis_Contig83:69290..693681680791688.0647388-CDS-P-littoralis_Contig83:69290..69368Pylaiella littoralis U1_48CDSP-littoralis_Contig83 69291..69368 -
1680791688.075955-CDS-P-littoralis_Contig83:69765..698941680791688.075955-CDS-P-littoralis_Contig83:69765..69894Pylaiella littoralis U1_48CDSP-littoralis_Contig83 69766..69894 -
1680791688.0890193-CDS-P-littoralis_Contig83:70095..701761680791688.0890193-CDS-P-littoralis_Contig83:70095..70176Pylaiella littoralis U1_48CDSP-littoralis_Contig83 70096..70176 -
1680791688.100767-CDS-P-littoralis_Contig83:70880..710161680791688.100767-CDS-P-littoralis_Contig83:70880..71016Pylaiella littoralis U1_48CDSP-littoralis_Contig83 70881..71016 -
1680791688.1156592-CDS-P-littoralis_Contig83:78752..789241680791688.1156592-CDS-P-littoralis_Contig83:78752..78924Pylaiella littoralis U1_48CDSP-littoralis_Contig83 78753..78924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.23.1

>prot_P-littoralis_Contig83.23.1 ID=prot_P-littoralis_Contig83.23.1|Name=mRNA_P-littoralis_Contig83.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=381bp
MAHDPADLCGIILYTFFFGLVCFRIQPFLADGCSLSSTDRIKLAFHVCLV
LSALLEIVHYAIEIAFRGSVLSGYACHLVGLWLSLVAFSLVIVLWSNTLN
PPRKSVQRGASDGDGDDDGPAGWKCCGTTRISAAAKVVCAIDAIVAVSTV
IVLWTGSVPAYSRPYLILMVIHSVTLFLLASWLVLYGIRLQRRVMGHPRW
EPLDRRQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNR
LLFELLARWVSGLIPGCALLHIMCKTKKPGEDRPPVDRTRLSVVNEDQPL
NEPLLPTHGAGFTTTPGYSIAKKSLASGSRGPSPSNRNARPGAGRVGGRG
GRIDGVQAAGNDSFVYQIVRSQRERTETTI*
back to top

mRNA from alignment at P-littoralis_Contig83:65859..79168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.23.1 ID=mRNA_P-littoralis_Contig83.23.1|Name=mRNA_P-littoralis_Contig83.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13310bp|location=Sequence derived from alignment at P-littoralis_Contig83:65859..79168- (Pylaiella littoralis U1_48)
AAAACAATAGCATTCGCCACAACCCCCGAACACGTGGAGCACCTTCTTTT
TTTTCGTCTGACTTATCCGATAGCTACCAACTCATCTGCTGGGTGAATCA
ACGTGACCCTCTCTCAGGACACTTCCCTTAGGGGCGGAAGACGGCCACAT
TCAAAAAGCCCGTGAGAGAAGGTCAAGGTTGCAGCGAAGCAATTTTTTTT
ATTTCTCTTTCTTTAGTTGCAGAGGATTGGAGGCAGAGTTTGCGATGGCG
CACGATCCAGCGGATTTGTGCGGAATTATCCTTTACACCTTCTTCTTCGG
GCTGGTTTGCTTCCGGATACAGCCCTTCTTGGCGGACGGTTGTTCGCTGT
CGTCGACAGACCGCATCAAGCTCGCCTTTCACGTGTGCCTCGTCCTGTCA
GCTCTGCTTGAAATTGGTGAGAGAGGAGAGAGCAGAGAGAGAGAGAGAGA
GAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGATGAA
GGGAGAGACCAACCAGACAGACAGACAGAGAGAGACGAAGAAGAGAGGTT
CAACAACGACACCGCCAACGTAGCATGCTGTAAATGTTCCAGAAACAGAC
AGACATCAAAGACCTTTGATGCAATCATTTGAGACCCCCGGAAGCAATGT
GAACTTCTTTTGAGAGAGTGTCGCGTCTACCCCGACTGATGCTGTTGATC
ACAACGCATGACTCCCTCATGCACTATACTTCGAAGTAGACTAGGATGAA
ACGGAAGATTACACTCATGTACCGATTTTCCATGGTTTTTATCTTCTCCA
GCACGACAATCCTCAGCGCTGAATTGAAATCTAGATATGACACTCCTTCG
CTCTTATCATAGTGGCGTTGGCGTTGCAATTTGTCATTGTTATATTTCAG
CAGGCGTGTCCCGGTAGTTCGGTGTGGGCACACGATCACGGCTGGGCTAC
TCGAGTAGCCCGGGTTCGTTGTGAGCAGGGAACGTTAAAGCCCGAATAAA
CGGGGAATTGAAAAAAACGAAATTGCGAAAAAGAAAACAATCTGATTGGT
CCGAGGAAAAATGAGAAAGAAGCGTTATTTTATGTGAAAGAGGCGTGTCT
CCGATTCAGCACACACCGAGCAGGCGGTACTTCGTTTTTTTCTTAGCGAA
AACAAACTATATTGGACCTTTTTTTTGCGAAAACGGAAACGAAATACCGC
CCCCTAGGCTTGTAGGCGAGGACGCTTCAGCTCTGCGAGGCATCTCCGGT
CTTGTACAGCAGACAAGTTCAAACGTTGACTGATAACTCGCCACACAATC
GACGAAATTCCCTGCTATTTGCATGTCTAGAGAGGTGGGTTTGAAGTGAA
ATGGGAATGCCCAAGGTTTGGGGCAGTGGAGTGTCAAGGGTGACGCGAAA
TTTTTTCTCAACTCGTGCACGACGACCCTCTTTTGCTTTGAGCCGCTTGT
TCGGGTGAGTTCGCAAGCAGCCAAGTTCACGTTTCCACTGATATCTCGCC
GGAAAACGGATGAAATTCCCTACCAACTGCGTGCCTAGAGAGATAGGTCT
AGTGTCCATCGTGAACACCCGAGGTTTGGGGTCGGTGAGTATCGAGCGTG
ACGGGATACAAGTGATAATCCATCCAAAAAATATCAAAAGTCATCGCAAA
CGGTGTCCTCTCGTGTACTGCTGTATCTCCTCTTCTTCTCCACCCTGGTA
CCAGGTCCGCTGCAGCAGCGTGAAAAAAAAAAGAATGCTCGTACCGTTAA
TACTCAACAACTATATCTTATTTTTGTTTACAGAAGAACGAAGTAATTTC
GTTTTCGTTTTCGCAATTTCGTGTTTTTCAATTCCCCGTTTATCCGGGCC
GTTACAGCACCGGTTGCGGCTGCTGCTGCTGCTATTCGCTAACCACCTAT
CAAAGGGTATACCCAAACATATAATTTTGGGGCGCACGTTACCCCTTCCG
GTTCCAGGCTGGGCGAGAAAATAACGCCTTGGTTTTAACCTTGAAAACCT
CACCGCTGGGGTATTTTTGTCTTCACCACCGATGTTAGCTGTACGAGTAA
GCACCGATAGGAGTACAGTCGCGTGCTGTTGTGCTGTTGTGACACGTGGG
TGAAGAAAATACAGACGCTGCTGCTCGGTGTGTGGAGAAATAGCAAAATA
TGTCTCAATGTCTCAGTTGTATCCTGTGTCGCTTTTTCGCGTCTGACTGC
AGTTCTACTGCTGTGGACACTTCTGTGGACACCAAAGGTAAATTATGTGT
TTTGATAGGTAATGCACTCCCGGATTCCAAGTGATTTTTTTTGTGACCAC
CCTCTGGTGATTCGAGAGCAGGCGTTTTATTTTAGGGAAGCGGGGTTTTA
TGGGCTCAGGCGAACCACTTCAAGCGGTTCCCGGCACACGAGTAGGGCTG
TCACCAAGCACGCAAGTGCAGGTCGGTATGCTCCTGACACGTGTGCTAGT
GCTCGCGGGATTTGGAGCTCTGAGAGGTACGGTGGATAAGAGATCATCAT
GAAAATGTGTCCAGATTTTGGGTGAAAAACTGCACTGTTTTGACCGCCTC
AGGCTGGGCCTTGACACCATGCTCGGCTTGCAAACGTGCCAATGAGCTCT
CACCACGCAAGCGTAGTACCACAGTTGATACCACACTGTTGCAAATTGTA
TCTTGGAAAAAGACGGTCCACAGCGAGAATGCATAGTCGATGAGTGCCGT
GAGATCTTGTAATCGTCTATGACTGATACGTATTCTACAGCAGTACCGGT
AGTCCAGAGAGGATAAAAAAAAGAAACTTCAAAACAAATTGAAGTTTTTT
TTACCCTCTCTGGACTCCTGCTTGCTGTAGGATGCTACATACTTGAAGAC
GATTGCAAGATCTCACGGCACTCATCGACCATGCCTTCTCGCTGTGGGCC
GTCTTTTTCCTACCTACAACTTTCGACAGTGTGATATCAACTGTGGCAGT
ACGCTTGCGTGGTGAGAGCTCATTGGTACGTTTGTAAGCCGAGCATGGTA
TCAACGCCCAGCCTGAGGCGGTCAGAACAGTGCAGTTTTTGACCCAAAAT
CTGGACACATTTTCATGATGATCTGCATCCACCGTACCTCTCAGAGCTCC
AAATCCCGCGAGCACCAGCACACGTGCCATAATCATACCAGTCTGCCCTT
GCGTGCTTGGTGGCGGCACTACTTCGTGTGCCGGGAACCGCTTGGAAGTG
GTTTGCCTGAGCCCGTAATACCCCGCTTCCCTAGAATAAAAAGCCTGATC
TCGAATCTCCAGAAGGTAGTGACGGCGGAATTTCGCTATTCACTTGAAAT
TTCTTGAGAGTGCATTACCTACCACAATACACCATATACCTTTGGTAGAC
ACTTTAGTGTGCGGCCCGCTCGGGGCGTATTCCTCATCTAGTTGCGTAAG
CATCCGGCCGCTGTTTTGAGCATCGACTCTGCCATCCTTGTGCTTGAACC
CTTCTGGGACCAGGATGTTTTGTTCCTTTTCACACGAACAGCCCGGGTTC
CAAATCAGAACCATACGATGTTCCCCCGAGAAAAAAAAATATGGCTCGAA
TGTCCCTCTCAAATGTACAGCAGTCACGAAACCAAGAGAAAATGTACACA
ACCGCACCACAAAGATATACAGCCAGGGCCCCTGACGGGGGCTCACAGCG
GGCTGGTTATGTCCCTGGAGAGTACAAAGAGACACCGGGTGGTCGAGATG
CCGCGGCTAGCTCTCAGGCGTCGTGCAACGTGTTCTAACCATCAATAGCG
CTTGAAGTATCCAGTCCCCTCAAAAGAAGATAATATGGAATAAAGAGTTA
CTGCTAAGGCCCTTTTTAATCAGGAGGCCTGAATTCGCCGAAACGTTTTT
TTTTCAGGGAACACAAACCTTGGAAATACCCCCGTTCTAATCGGAGAGGT
CATGGTGCTTTTCTACTTTAAAATCAGACAAAGATCACTACTCAACAGCA
GACAGCAACATAGACAGAAGACCTCCCAAGTCCTCATTCTTTCGAAACGT
AGGTCTACATGATAGTGACCCTCGGTATTGTTGCCGCTGCGTGGTTATGG
TAGCTCGTGTGAGGCTCACCGAGGGACGCAAGAAGATGGTGTGTGCTGTT
AGACGCTTTCCAAATCGCGGTGGTGGTGTTTTTTGGTTGCAGTCACAAGC
TTCACTTGACGGCATCAGACAGCATCAGAGCTACAAGGCCTCCGAACTCC
TGGTTCTTTTGAAACGGGCGCCTACATGGTAGTGGCCCTCGACCACGCTG
GCGCTACGCGGTCGTTGCAGCTTGATTGCTGGCTTCAAAGGGGTTGCCAG
CAGGGTGTGTGTTGGCGGAGCAAGAAAAAGAGGCAGACAAGCGGCGAAAT
CAAGGATTCCGGTTTCTTCTCGTCGCTACTGCTCTAATTTTGTTCACCAA
CGTCTAAGGGTGGCTCTTGTCAAATTCTTGACCGTATTCAAAATCAAAAA
CAAAATTGGATTTGGATTTTGATTCCGTGTTGGATCCGATCTGCTGCAGC
TTGCGTTCGTCCAAAATCAAAAGCGGATAAAAAAAAAAACAGGGGTCACA
GACAGGTGGTGTGTGATATGAGCTTGCCGTGTCTCGATCCCCAAGACAAG
TGCGGGAGCTGTCGTGCCCAAACGAAGAGTACGATGGTGCCCCACGTCGC
CCTGACTCAGGCGCGTTGGTAGTCCTTTGTTTGGGATCGATAACCGAAAA
ATTCGGCAAGAGATGAGTAAGTACGTGTTTCACATCTGCCCTTTTTTGGA
GGTAGCGGCTGTGTCAGAACAGCAGTTGAGCGACAAAGTTCCTGCACACT
TCTACACACTTGAGTGCTGCTCTCCGGATTCTAGTCGGAATCCGCTCAAA
CAAAGTGATCTGTATTCTGCGTGATACCAAGTTTCTCCGGAGCTAGCACA
TGTGTACAGCCGAGGTCTACACGTTGTGATGTGGTCAGCTAAGCAAACAT
ATGTGCACCATGTGCTCCCGGAATGCACAGCAAACACCTCTCTGTCACAT
ATTCTAGGTCTATTTGTTTTTGAGCCGCGTTTTTTATCTTTTGGCGGGAA
GGAAAGTGTTTTTTACTTTCCTTCTCGTTTCGGAAGAATAAAACTGAAAT
CCAAAAGGTGGTGCGGGCGGATGGATTGTTGACCTATCGGTGACATATTC
CGAGTTTGATTTTTGATTTTTGATTTTTGAATGGGCCCAAAACGCTTTGA
CAAGAGCCACCCTCACCACACCTGCCGGAATGTGCACATTAGGGATGGGT
TTGCTCGCCAGAGTGATTGTCTCGGGTACCCTGCTCTTTATTTTGCTATC
TGTACTGCTGTTGGTGCTGTAGGGCGAGTTTGGTGTGTGTTGTGTACGTT
CCTGGAAATGGTTGGAAAAATTCACCTTTCGGTGAAATTGAATATTCACC
TTATTTTTGCTGTCGCTCAATTTCACCTTTCGGGGGAAGAAAGCCTTCAT
ATTGTCGGCCATTTCACCGAAAAGTGAAAAAAAAAAGCGGTTCGGCGAAT
TCAGGCCTCCTGATTAAAAAGGGCCTAAGGAGTTACTCGTTTCCCGCTGT
AGCCCCCGGCCTGCTACACGTACTTTTGGGTAGGAGTCCCGTGGCCTGCG
GCCGGCCTTGAAGGCCGGTCCTTCCTACTCGCACATAGGTACAGGTAGAC
ACATCATTGGTACTGGTAGCGGCAGCAGCAGCAGCAGCAGCAGTAGTAGT
ATACTAGCAACCAGTCGCATGCATCTCCATATCTACATACATGCTGCTGC
TGTTGTCGCTGAGTTTTGACCAAACAAGATAATAAGATACTCTGATGTAT
CATACATAGAGGTATGACTCTCTGCTTCTACTGATCTTCTGGCATGTTGT
GTCATACCAACAAGCGAGGAGGTATCATATGGCATGTGATGTACTGCTGT
ACAGCAGCGGCAGTAGTAGGAGTAGTGCTGCTATAATGCTGGTGTGGTGT
TACACTCCTGAAAAATATGATACACTGCGAAGCGTAAATACTGCCAGACG
GGATGATTTCAGATTTCGGCATGCCGGGGATTTATTATGTTGACTGAGTC
TTGCTGGGCACCCTCACACCCCTTGACCACACATACAGCAGCAGCTGTGA
GCGGTGTTTGTTTGTCCTCTTGCCCGTATCTGAGTGCAGCCGGAATGCTG
CTCAACTCCTAACGTGATGGGGTTCGGGAATTTTTTGTTTCTGTCCCCGT
CCCGAAGAGACCGACCAAACAAAAAAATAAAAATAAAGGATAAATAATGT
GTGATCAATGAATCGCCTAGAAGTCACAGAAGGGTTAATGCAAAAATGTG
TCGTATCCAAGGCATAATGTGAGGGATATGAAGCAAGGGCTGACCCCAAA
AAACATCGCCCGCCAACAGCGGTGCCCCCTCTCCAGCAGATCAACGGAAT
CTCTGCATTCTCCGCCCTGTCAGTTAGTACGTTGTTCAGCTTGTTCGAGG
GGTTTTGGTAGATACTCATGGAGATAACTCTTTGGTTTCTGCATGCTTTT
CAAGACAGAAACTTACACCGTTTTGCTAGTCAAGACAGCCACCACCACAC
GCAGTAGCTGCATAGTTGTCACGGGGTACAGCAGTGTACGCGGGCGGTGG
TCGTTCGTGTCCTCAGGGGAGGACTCGTGACTGCGCTGCACACCCACCGG
TGCGATCGCGTCCAACCCCCTTACGACTTATGAGAGGTTTTGAGACACCT
AGTGACACTTGAGTTCCCAACTTTTTTTTATCTCGGCTTTTCGGGCACCG
TTAACAACGCGAATATGATTCCATTTTCATTCATTTGATGCGGTTGGAAG
AATTGGAAAAGTTGTGCCGGATGAACAAGATTCGATCACATTCGGTTGGC
GGCTGGATATCCGCAAAATCAATAAACATCAAAGACAATCATGGAACGAC
AGATACGTCTTGTTCCCCTTGAAAGAGGCAAATGTAAAACATGGCGGGAC
AGAACTCACGAGCCACCAGCCAATCAATGGCCTGTATTTTCACGAGCCAG
CACGAGTCACCGCCAATCAAACGCCACTTTTCCACGAGCCAGCACGAGCC
ACGCGAAGATGCGCCGCGTGTGGTAGACATCGTGTATTATTGCTACTTCG
AAGTTGCAGACAACGTGCAGCATCAACAAACAGCAGCACCATCGCCAGCA
GAAGTATCAAATGCAAGAGAAATTCAACAAGCTGGAGAGGGAGGTCCTCG
CGGCGGACTCGGTGGGCCTGCAAGTTTCTACCACCCCCACCTCCTGCAGA
TGTATGGAGGGCTTGCTGCCCCACAGTACACACACAAGGAAGGAGGGTGC
CGCATTTTGGATATTACATCATGCACCATCATCACGTGATCCACCTCAAC
ACACCACCAACAATCAATCGATATGGACGTCGCGATCACTTCCTTCCGTG
TGCCATCTGCGGTCACCTGCCCCCTCCCGCTATGATACTTGTACAACAGC
AGTAGTAGCGTGTACTACTACTGTTGTCCTGTTATTTTGCTGTTGTTGTA
CTGCAGCAGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCAAA
AACGGACCCTTTTGCTCACAATGAAAAGGCTTTTTGCTTTTTTTGGCTCC
TCTGCCTTCGGTGGTTTTTAGTGTGGTGGGCGTATTCCCCCAACACCGCC
TACTTTGGGTGTATCGTGTGGTGCATATTCTATCGCTGCTTTTACTGCGG
CTGTGGTACAGTCACACCAGACTTTACATCATGTGAATCTTGGATTGTGA
CATGTGTGATGTGTGATGTGATCGTGGAAATGGACTGCTTTTCGGGAGCT
TCGCTCCTGTATTTTAACCCCTCCCAAGAGCTGTCCTGCTAGGTAAAAAA
ATTGCCCTTGAAATACGTGTTTTTGTCCACAAAGTGATGATGGCACGGGG
CCCCCTAGTTCCTAATTTCTCATGTGAGATGTCCACAACCAATCTTCTAG
TACGCAAGTGCATTTTTTTTTGTTCTATGGGCAAAGTGTCGGCTCTACAG
CGGTCGAGCTTCACCCTATTTCGGCCACTGCTCTACCGATGCGTTAATTC
AATCTAAAGCTCTCAGATATGACCAAGCGCCACTCCGACACCACACCCTA
CCCAACCCCACCCCTTCCCCGATGCGCGCGTTGCTTTCGCCGGCGTGCCA
AGTGCACTATGCAATCGAAATTGCCTTTCGTGGCTCAGTGCTCTCAGGCT
ACGCTTGCCATTTGGTGGGTTTGTGGCTGAGCCTCGTGGCGTTTTCACTC
GTCATCGTTCTCTGGAGCAACACGCTCAACCCGCCGAGGTCAGACGGCAC
ATTTGGTAGTCTGGAGGCAGCAGTGATATTTGTAGTGTTGTGGAAGCAAA
ACAATTTTTCGTGGGTCATTCGATTTCACATGTCGGACTGGGTCCTCTTT
GTTTTTTCGTTGCTCGTTCAGGGAATGACTGACCCAGTCCCAAATGTGTA
CCCAGTTTGTGGCGTAAGCGTTGCGCTTTGAAATTGTTTCTTCAGTTATG
AACCAATCGATGCCAGGGAAGATTTGGAATTTTATTTCGAAGACTTTTTT
TGGTAAAACCGTAGAGAACAGAGGCGCAACGTCCCGTGGCGTCAATTTTA
CTGAGAATAGCGAAGGCAACAGAATTAAATGGCTCTCTGGGCGGCATCGA
CTCCGAATCCACGGCATCACCTCGACTCGAATCTCACGCACGACTAACTG
CTGTACGCCTCAACACCAAGCCCATGCCCGACGAACTTGTTCATATTGAA
TCACGTCGACGCACAACCCATGCGCGACTTTTTCTACGTACACGCTGAGG
GCATGAGGTGATGACGTTGTACATTCAAAAACCTTGAGAATTGTGCGAAA
GTGTTGCTAATTCAGATCGCACTAGCTGGGTTTAGAAACTACCGTTATCC
CTCGGTCTTTGAGACGGCGGTGCCGGCGGTGCCGATGGGTCATTATTCCC
TGAGTTTCGAGCGTTTTGTCCATGTATTCATTTATTCTTCAGGAAAAGCG
TTCAGCGCGGCGCGTCGGATGGCGATGGCGATGACGACGGCCCTGCCGGA
TGGAAGTGCTGCGGAACGACGAGGTGAGGGTGGGGAGAGGACCCTCGTCG
GTTGATTACCCCGCGTTACGCACAAGCGGCGCAGTCGTACGAACCACCTA
TTTCTTGGGTGAAGACTCCACCGTTTGTTCCCGCTTCGCCCCCGCGTTGT
GTTCCATATTCCCCCCCCCCCCCCGTTCGTTGTTGTTGCCCTGCTTGCGT
TGCGCGTCTTTTCGTTGCGTTAAGAATATCTGCCGCCGCGAAGGTTGTCT
GCGCGATCGACGCCATCGTGGCCGTTAGCACGGTGATAGTGCTGTGGACC
GGAAGCGTTCCTGCGTACTCACGGCCCTATTTGATCCTGATGGTAATCCA
CAGGTGTGAACGGTGTGTGCATGACACGAAATGGCGCCGTATTCATTGCG
CTTTTATCGTACTTGGCCACTGCCTGAACAACGCGCAAGGTTAAGCGGTG
TGTTTTCGGCATGCATGCCAACGGTGCGGCAACCCGGTCTCTCACGTCTT
GCCACGCACGATATCGCGCGTGGGCGGGCAGGAGGGGTTCAAGAAGACGG
AAAGAAAGGGCTCGACGTAGACGTGAGCCGACAACTACCCCAAAACTACG
TGCACAAATATACGGAGTATATTTTTCCGTTTGCTTCAGGAGTCACGATC
AAAATGCTTTCAACGCCTCCTGCTGCCCCGCCCCTGCCCTCACCCTGCCT
CCCGGTCGCCGCTTTTATTGTGGCCGACTTAACCTGTGCGCTCGGATCAG
CGTAACTCTTTTCCTGCTGGCTTCTTGGTTGGTTTTGTACGGTATCCGCT
TGCAGCGGCGTGTCATGGGTCACCCGAGGTGAGTTTTACCGCTCCACAGA
GAAGGTTGTGTTTTTTTTCTGTCCATTATGTGGAACAGGGCCCCTTCGCA
AGGGGTACATTCCCACAACGTCTGTCGAGGACGGATTCCCTCTTTCCACA
ATTACATCAAATGTGGTATGCTTGAGAACTCCCTCGCGTGAGAGTCATTT
TTTTCTACCCCTTCAAAAATATTTTTTTACGCTGCAGAGTGTGCAATAGA
GTATGCAATTTTAATTTGCGATACTGTAGTGTGTTGTGTTTTTGATGTTT
TAATCCAATAATGATAATGCATACCCAGCGCTAGATTCAATCGAAACGGA
AGTGTGTGGCGTGCACGCAATGCAGGTGGGAACCCCTCGATCGTCGACAG
CGGCTGAAGATCCTGTGCCGCATCAACGGAGTTCTGGTGGTTTGCGCGGC
GTGTTTCCTCCTGCGCGTGGCGGTGCTGTCGTCGGCCCTGTTCGTGCGCT
CCAGGCACAGGTGCGTTGTTCCAACTGACGGAGAAATGCCGTAGATGAAA
AGGCTTCCAAACAAAGAGCTCGATCGGGGAACCTTTCCCAGCATACAAGA
TGTTAACCCCTGATTGTATAGTTGCTGTCGGTATATCCAAATCGTTCTGA
CCTTAGTAGCCCAGTACCTCCCCATATCGTACGGGCCCAATCAGCGAGAG
ACGACTTTCGGGGTCAGCACAGATACGGTACACGAAGATGAAAACACGCC
GAGAAACATCTTGACACTCGCCAACAGAACCTCAACTTGAGCCCCAGGTA
TGATTGCTAACAAGACAGGGAAATACAACAACAGCCGTGCACTCAGATCA
ACTGAACGTCGACGCAAATACAACACAACGAAAACGGAATGGTTTAGGAG
CACTCGTTACCTGCGCTGTGTCGGCGCTTGCTCAAAACGCTTTTTTGCCG
ACCGAGGCGAGCGTCCCCGCGGCTGAATGTGGGGGCAAGGGCTTGTGGTT
GCCAAGTATAGATGCAGTGTAGGTAGAGGACAACGACTTTATAGTGCGGA
TACCTGGATGTGAGTACGCCCAACGACACCTACTCGTAACGGGCTGATAC
ATTATAATTACCATGCTAACTATGTTCTCGTTTATCCTTTTGATTATGTG
AACCATAACCATCTCAGGGCGGAGGAAATGAACCGCCTTCTCTTTGAGCT
TCTTGCGCGATGGGTGTCCGGATTAATCCCCGGATGTGCCCTTCTGCACA
TCATGTGCAAAACCAAGAAGCCCGGAGAGGATCGGCCGCCGGTGGATCGC
ACGAGGTGGGTGTAGCGCTCATGCAATATAGATAGCCTTTGGGCTGAAAT
GCCCAATTGGGAATCGTAGCATAGTTTGGCTGGCAATTGTTCTCCTGTCA
TAATTTTTACCCCTCATTGCCATTTCAGCTTCCTCCTCACCGTATTGTTT
TGAGAGTACGGAAGTACAGGGCGCGAAGGGCTAGACAGGGCACGGTGCAG
AGCTAGTCTCCGTTTGAATTGTGCGCGCCATGCTTGCGACTCGCGAAATA
AATACGGAGTATATTTCGCGTATGGTCTCCGGTCTGCACGTTGTGTCATA
CCTCATGTATCATGTATGGGTGCCTCGAACCTTGAAGTTGCCCTAATCTT
TCAAAATGTTGAGGAGAGATTCCCAGTGAAGGGGTTCCCGACATATCGAT
CATCCCGTTCACTCCATGTTCGTTTCCAACCGATTTCCCTTCCGACATCC
CCTGTAGGCTCAGCGTAGTGAATGAAGACCAACCTCTGAATGAGCCTCTG
CTTCCGACGCATGGGGCTGGGTTTACAACAACGCCAGGATACAGCATAGC
GAAGAAGAGCCTCGCAAGCGGAAGTCGAGGTCCGTCGCCGAGCAACCGTA
ACGCGAGGCCGGGAGCGGGACGGGTGGGAGGGAGGGGGGGTAGGATCGAT
GGGGTGCAGGCAGCGGGGAACGACAGCTTTGTTTATCAGATTGTAAGGTC
TCAACGAGAGAGAACGGAGACGACAATCTGACGATAATTTTTTACTGTGG
GCATTTCGTCGCCGCTACTGGGAACTTTTGTGTTGAAATCGATGTTTAGT
GTTGATTGTCAGGGTGGCCGAGTGTTGCAATGCGGGTTTTGCGGGCATTT
TGTTCGTCGTGTCGGAGAAGTAACGTGTCGGACTGAAGAAAGAAATGCGC
GGTCAGGGTGCAGACACGAAACTTGTGCTCTTGTGGTTCATTTGACGTGT
CTCATGATTTGTAAAGAACACACACGTATGCATATCATAGGCGAAAAACA
GTACAGTAGTGAGCACTCCTCGAATGTTATGTTTCGTGTACTTGTATTAT
GTGGCGCATGTGTGCTACTTTTTTTTTTTTTTCAACTTGCAAAACTTTTG
TAAGTGCTGACAACAGCAATCCTAGCGTTCGCGAAAGATTCTCCGCAGGC
TTAACCTCTCTGGGACTAGGCTGCTCACGCAAGTGGCTAGTCAAGTAGTC
TGCTTTTTTTTTTTTTGGTCGGGCAAAAGGGTTCCGTTTCGTGCAATCTC
GCCGCGCATTGCCTCCAAAAAAAATGAGCTCTTGCAAATTGCCTCGAGAA
TTGCAGCAGCATAGCAGCCATGGCACGAGCTAAAAATACGCAGGGGCCAC
GGCAAAGGCCCGCGATAGGCTCGATGGGTTAGGTTACATAGTAGAAGGAT
AGCCCGGCCGCTATTACGAGCCGACAGAGGTAGCATGCTGGATCCCTGGT
TCCGGTGTGTTTGCCCATGCTCTCTATTTCAAGTATCATTCAATTGCCCG
GAAATAATGCCCGATTTTTCCCGGGTGAAGGTCTTTCTGTATCTGTAATT
CTCTAATCCCCTGGGTGTGGAGTCCTTCCGCCTCTCGAGGCTACCCAATA
TTGCTGCTGTTGCTGCTGCTGCTGCCTAGTGAAGGCTCTCGTAGAGAACG
CAACCATGTCTGTCCTTCCCGCGGTTGACGCTACCGCCTACACGGAGGGC
GGCACAACCGCCTGCTACGTACAACCATTTCGTCTCTTTCATGAAAGAAA
AAGGCTTGCCAGATGGAGAAGCCAATACATATACTCCGTATGCTGTTTCC
CGGAAGTGCGGCGCATTCACAGACGTGTTCATGATTCCTGAATCTAAGTA
GACCGGGCTGGAACAAAAAAAAAAATGCCCGATTCTGATGCCCGATTTTT
CCCTCTGAAGGCCCAACAGGCTTAATTAGATGCGAATTACTTCGCAGGAG
ATGTCGGTGTTGTTTAGGCGTTGGAGTTTGTTGTTTAGTTGTTCTTGCTG
TTTCGTGAATACGCACGTATGAGTCTGTAAGCGTGTTGGTCCCGTTTTAT
TCTGGCGCCAGGCTACGATACAAACACGATACTGTACAACAAGTTCATCT
CTCTATTGCCGTAAGATCGCAGATACGAGCCACACCGCCTGGAGATCAGG
GCGGACCCCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig83:65859..79168-

>mRNA_P-littoralis_Contig83.23.1 ID=mRNA_P-littoralis_Contig83.23.1|Name=mRNA_P-littoralis_Contig83.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1143bp|location=Sequence derived from alignment at P-littoralis_Contig83:65859..79168- (Pylaiella littoralis U1_48)
ATGGCGCACGATCCAGCGGATTTGTGCGGAATTATCCTTTACACCTTCTT
CTTCGGGCTGGTTTGCTTCCGGATACAGCCCTTCTTGGCGGACGGTTGTT
CGCTGTCGTCGACAGACCGCATCAAGCTCGCCTTTCACGTGTGCCTCGTC
CTGTCAGCTCTGCTTGAAATTGTGCACTATGCAATCGAAATTGCCTTTCG
TGGCTCAGTGCTCTCAGGCTACGCTTGCCATTTGGTGGGTTTGTGGCTGA
GCCTCGTGGCGTTTTCACTCGTCATCGTTCTCTGGAGCAACACGCTCAAC
CCGCCGAGGAAAAGCGTTCAGCGCGGCGCGTCGGATGGCGATGGCGATGA
CGACGGCCCTGCCGGATGGAAGTGCTGCGGAACGACGAGAATATCTGCCG
CCGCGAAGGTTGTCTGCGCGATCGACGCCATCGTGGCCGTTAGCACGGTG
ATAGTGCTGTGGACCGGAAGCGTTCCTGCGTACTCACGGCCCTATTTGAT
CCTGATGGTAATCCACAGCGTAACTCTTTTCCTGCTGGCTTCTTGGTTGG
TTTTGTACGGTATCCGCTTGCAGCGGCGTGTCATGGGTCACCCGAGGTGG
GAACCCCTCGATCGTCGACAGCGGCTGAAGATCCTGTGCCGCATCAACGG
AGTTCTGGTGGTTTGCGCGGCGTGTTTCCTCCTGCGCGTGGCGGTGCTGT
CGTCGGCCCTGTTCGTGCGCTCCAGGCACAGGGCGGAGGAAATGAACCGC
CTTCTCTTTGAGCTTCTTGCGCGATGGGTGTCCGGATTAATCCCCGGATG
TGCCCTTCTGCACATCATGTGCAAAACCAAGAAGCCCGGAGAGGATCGGC
CGCCGGTGGATCGCACGAGGCTCAGCGTAGTGAATGAAGACCAACCTCTG
AATGAGCCTCTGCTTCCGACGCATGGGGCTGGGTTTACAACAACGCCAGG
ATACAGCATAGCGAAGAAGAGCCTCGCAAGCGGAAGTCGAGGTCCGTCGC
CGAGCAACCGTAACGCGAGGCCGGGAGCGGGACGGGTGGGAGGGAGGGGG
GGTAGGATCGATGGGGTGCAGGCAGCGGGGAACGACAGCTTTGTTTATCA
GATTGTAAGGTCTCAACGAGAGAGAACGGAGACGACAATCTGA
back to top