mRNA_P-littoralis_Contig83.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.22.2
Unique NamemRNA_P-littoralis_Contig83.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig83.22.2 vs. uniprot
Match: A0A6H5JCV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 3.130e-80
Identity = 327/786 (41.60%), Postives = 386/786 (49.11%), Query Frame = 3 
Query:  306 GGQESVALMNNYLARVKEECKPAIYSAFIGLMNAYHGNMLAVDTFIDELYVLFSPRVHLLADVKPLVDASYHQRVDELCDKVHSGDEAAVGGV----GKSHSPA--ALGAFPSSSQHXXXXXXXXXXXXXXXXXXXXXXXXXGDVNGKTWPNTMLRGGSGNNDEGTLPSVSTASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSSSTNDELDGALSLSSPSSTRGGATVLGDTTDIEELLTGVDEPNVDTDLLDFIMCDDDNPSVLGSSAASMEPQALNAHQRKLKHHHQHQWSFSTPSPPLTDPLIAKSNGKPTAASPTQKARASADSHS---------SASSSVVLTNTGTANTN-------SLQWSRNGSAPNLADVPCRIHAT-PIAGCRNCRWEASLSSSAPAALHTATRRRCAVAISKGGSKQQATGRSSPPQGGSRAVLPNQGGLNKGVHGXXXXXXXKN----------------------NVLDVDDGTYHGPGKRVWEKIGGAGSSGGSSGLVSPGSGSTSPTSFYFPSXXXXXXXXXXXXXXXXXXXXGSGTPSRPNARRKISTDPLPTFINDD-GSGNTGAGGGGMARWXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------PPVNRDPESVGTKRNAFAGLGSARSLPTVGEGPSNNGDGGGSEIPGRPRSADDMEKLVVSVATRGMQQALTFGLRNTFAMLLRKKDQEIAELKEEGLRWSANDTRLRQINQQLLNDNMKLRAAASAVG 2498
            GGQES+ALMNNYLA+VK+ECKPAIYSAFI LMNAYHG+ L VD F+DELYVLFSPRV+LLADVKPLVD SYHQR+DELCDK  +G            G S  P   AL + P SS                            ++N +T P T    G G+  +    S +        XXXXXXXXXXXX                                 + +NDEL+G L       +R  ++ + DTTD+ +LL+G+ EP VD                                           W  S P  P  +P+I   NG  +  SPT+K R S D  S         SA S+    N+   N+        S+ WSR GSAPNL ++   I AT P A  R  +                   RC+VAIS GG+ +                             XXXXXXX                        N +D DDG ++GPGKRVW    G                           XXXXXXXXXXXXXXXXXXXX    P RP ARR++ST PLP  I DD GS    A        XXXXXXXXXXXXXXXXXXXXXXXXXXX          P VN DP+S+G K + FAG+GS RS+    E  ++ G  GG+    R RS DD+EKLVVSVATRGM QAL +GLRNTF  LLRKK+QEIAELKEE LRWSANDT LRQIN+QLLNDN++LR A  A G
Sbjct:    7 GGQESLALMNNYLAKVKDECKPAIYSAFIRLMNAYHGHTLNVDAFLDELYVLFSPRVYLLADVKPLVDESYHQRIDELCDKARTGGSXXXXXXXXXDGLSFPPTLNALASSPGSSN-------------------------GNNINSRTAPGT----GGGSGIKAEPRSTNPIRGGSGAXXXXXXXXXXXXSSEARSGTSSLLSSPTMADATSSGGSSGKASAPARSNDELEGMLFRRRGKESRVLSSDVADTTDMADLLSGI-EPGVDAP-----------------------------------------WVVSGPFSPTMEPVIPSCNGATSGTSPTKKRRVSEDRSSCVPAAAGRMSAGSTDAAANSDNNNSGDGRTASPSMIWSRVGSAPNLTNLSFSIQATLPSAHSRGQQXXXXXXXXXXXXXXXXXXXRCSVAISNGGTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMDTDDGVFNGPGKRVWGNTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPCRPTARRRVSTKPLPACIKDDYGSSIVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRTLPPHVNLDPDSIGAKGSGFAGIGSQRSMSIKEENSASGGGVGGNGSAARSRSVDDLEKLVVSVATRGMHQALHYGLRNTFVTLLRKKEQEIAELKEEALRWSANDTHLRQINRQLLNDNVQLRKAVGAAG 721
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV8_9PHAE3.130e-8041.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:50690..62995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3446
Hectar predicted targeting categoryother localisation
Exons6
Cds size2292
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.22.2prot_P-littoralis_Contig83.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 51551..62380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.8776863-UTR-P-littoralis_Contig83:50689..515501680791687.8776863-UTR-P-littoralis_Contig83:50689..51550Pylaiella littoralis U1_48UTRP-littoralis_Contig83 50690..51550 -
1680791687.9595582-UTR-P-littoralis_Contig83:62380..624341680791687.9595582-UTR-P-littoralis_Contig83:62380..62434Pylaiella littoralis U1_48UTRP-littoralis_Contig83 62381..62434 -
1680791687.9714906-UTR-P-littoralis_Contig83:62756..629951680791687.9714906-UTR-P-littoralis_Contig83:62756..62995Pylaiella littoralis U1_48UTRP-littoralis_Contig83 62757..62995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.8922205-CDS-P-littoralis_Contig83:51550..517661680791687.8922205-CDS-P-littoralis_Contig83:51550..51766Pylaiella littoralis U1_48CDSP-littoralis_Contig83 51551..51766 -
1680791687.9019835-CDS-P-littoralis_Contig83:52226..534981680791687.9019835-CDS-P-littoralis_Contig83:52226..53498Pylaiella littoralis U1_48CDSP-littoralis_Contig83 52227..53498 -
1680791687.9178429-CDS-P-littoralis_Contig83:53852..539491680791687.9178429-CDS-P-littoralis_Contig83:53852..53949Pylaiella littoralis U1_48CDSP-littoralis_Contig83 53853..53949 -
1680791687.9307787-CDS-P-littoralis_Contig83:54298..548771680791687.9307787-CDS-P-littoralis_Contig83:54298..54877Pylaiella littoralis U1_48CDSP-littoralis_Contig83 54299..54877 -
1680791687.9479299-CDS-P-littoralis_Contig83:62252..623801680791687.9479299-CDS-P-littoralis_Contig83:62252..62380Pylaiella littoralis U1_48CDSP-littoralis_Contig83 62253..62380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.22.2

>prot_P-littoralis_Contig83.22.2 ID=prot_P-littoralis_Contig83.22.2|Name=mRNA_P-littoralis_Contig83.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=764bp
MAGRGGQESVALMNNYLARVKEECKPAIYSAFIGLMNAYHGNMLAVDTFI
DELYVLFSPRVHLLADVKPLVDASYHQRVDELCDKVHSGDEAAVGGVGKS
HSPAALGAFPSSSQHTTTNSTSSCSSSLLASSAVPSPGGGGDVNGKTWPN
TMLRGGSGNNDEGTLPSVSTASVSAAAATAAAAAAAAAATGNGTSSPLLS
LKVGAAGGGGGRGVSGGGTGQSSSTNDELDGALSLSSPSSTRGGATVLGD
TTDIEELLTGVDEPNVDTDLLDFIMCDDDNPSVLGSSAASMEPQALNAHQ
RKLKHHHQHQWSFSTPSPPLTDPLIAKSNGKPTAASPTQKARASADSHSS
ASSSVVLTNTGTANTNSLQWSRNGSAPNLADVPCRIHATPIAGCRNCRWE
ASLSSSAPAALHTATRRRCAVAISKGGSKQQATGRSSPPQGGSRAVLPNQ
GGLNKGVHGGGGGGGGKNNVLDVDDGTYHGPGKRVWEKIGGAGSSGGSSG
LVSPGSGSTSPTSFYFPSAAAAAAAASSASATTPGGNNGSGTPSRPNARR
KISTDPLPTFINDDGSGNTGAGGGGMARWDPMPSSMGAGGTRYGGNSGGG
TRRRNPSPPVNRDPESVGTKRNAFAGLGSARSLPTVGEGPSNNGDGGGSE
IPGRPRSADDMEKLVVSVATRGMQQALTFGLRNTFAMLLRKKDQEIAELK
EEGLRWSANDTRLRQINQQLLNDNMKLRAAASAVGSGGAKAGSGDFGDGW
DSRSRGGRSPNTS*
back to top

mRNA from alignment at P-littoralis_Contig83:50690..62995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.22.2 ID=mRNA_P-littoralis_Contig83.22.2|Name=mRNA_P-littoralis_Contig83.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=12306bp|location=Sequence derived from alignment at P-littoralis_Contig83:50690..62995- (Pylaiella littoralis U1_48)
AAACCTCAACCATAACCATATACTTCGAAGTACTTCGTGCATCGAACCAG
GGCCCAGGGCCATGACAGACCAAAGCAGACGCAATATCTATCTCTGAATC
TCCGCCTCGTGACTTGCGCAATCTATAATTGCAACCGAGAGAGATCGGTT
GGAGGAAAGGCACCATATGGCATGATGATGGGCATTGCGCCCATAATCAC
TACACGCACAGCTGCAGGAAACACGACATTAATATACCGGTACGCTCTTG
GTTGCCCTCTTTGCCAGTGTTACATACTCCGAGTATAAATGATGTGACCA
CCACAGCAGCTCTGCGGTCCTGCTCGTATTATCTTCAAAAATGCGAAAAA
AAATGTCAAGTGCTCTCACCCCCAGAGCTGGCTTACCGTTGGCGTGCGGC
ACGCATCTGTACTGCTGCGGTAGAGCAGCAATCGGCTGTACCTGTTGGAT
GGTTGATTTATTTGGCGGGCCATCCGCGGAAATTTTCACTTGCTTGTGTA
CTCCTCTGTATTGCTGTAGCAGCAAATCTCACTTGCTTTGTGTCACACCT
GCCCCCCCCAGGTGTGTTCTACGGAAACAAGATCAGGATCAGGAGGGTAA
GCGTCCATAATCCCGATGGCGGGCAGGGGCGGGCAAGAGAGCGTGGCTCT
CATGAACAACTACCTCGCGAGAGTAAAGGAGGAGTGCAAGCCGGCGATCT
ACAGCGCCTTCATCGGCCTTATGAACGCATATCACGGCAACATGTGAGAC
TCAGCGAAGGGGTTGCTGTGCAGGTATACTGTAACAAGAGCAGTCATGTA
TGGTGACTATCTTCTTGTTTGTGCTCAATTTTTCATTTTTCTCAGTTTCC
CAGCTCCACTTTCAACCTTGTGGCGGGCTAAAACGAAAGAGGAGAGAAAG
AATCAGTCTTGCTAAAAGCAGACTGAGCAGTGATTTTTACGTGGCCCGGG
TGGTACGAGAGTGCAGTGGATTCCCATCTCAACATACAGCTGCACGACAC
CGGTGCCCTCATCCTACGTCATGCATGATATGACATTTGCTCGTTTACTG
ATGTAGAGTATTTCGCAGTATGATTATGCTGCTGTAAAAAATTGGAAAAT
TGGAAAATTCTCTTCAAAACGTGTTCCGCCGTTCTGTCTTCGGGGGGTCT
TACTACAGCAGCAGTATCATTTCCGCTTGAACGGAGATGGTGGTCGGTAA
ATTACAAGAGCCTTGGAACTAACAAGGAACAGGCGCACGTTGATTTAACC
TTGCGATTTCATACATATTATACTCTGTATTTTACCACAACACCACTGGA
TCGTACGTATCATTATCATTTCGTTATCATGTGCGCACTGGATGGTACAT
ACTCGGAGTATCATATTATCATATCGTTATCATTTGATTACAGCAGGAAA
CTATCGTCTTCGAAGTACAGTGAAACACAATATCCGTAAGACGCGACACT
ACTATCCCAGTATCCCCATGGGTACCGTAATCGTGGACTCTGAGGTTTTC
AACTTCGCGGAAAGATCATCCCGAACCGTACAAGAGGGGAGGGGTATTTT
TTCTTTTTTTTTCTTTTTGGAAGAAATGTAACACGCCTCTCTCCAGACGA
AGATCTTAGGGTTAGGATACACCGACCTGTGTTATGAATCAGCAGACAAT
GTACCGTTGCAGTCCCCTCGAGGTTATCAGGCTACATAATCAAAACAAAG
TGATTGTCTTGTTGTGTGGGAAACGTTGTATGATGTCGTGTGTAGTTCGC
ATGGGTAATGATAGCCTCTTTATGTGCTGTCTTTTTTTTTTTTAGATCTG
CGTACGGCAGCAGCATGTGGAAAACACCCCGGGGCGAAATGTCGCCGGGG
CGTTGTTCCGATCATCAGCACACACAACGTACCGTCATGTCACACACATA
CCACACATGGTTGGCACAGCGCGGGGCTTCAACAATGTCTACGAGAAGGT
TCCCAGAAACGAAATACTCTGGGAGGACGGACAACGTTCTCTTCCTTTGC
TCCTCTGTTCTACTCTACACGCTTAAACCGTCATTGGCGTCGCGCACACA
TGACGGCCTCTCAGACGCCAGCCGACGCAAACGGCTAATGCAGTGTCTAG
CCCGTCCCCCGTCACTGCCGTCACCCACATACTGTAGACGCCGGCCCTTT
CCACTGCTACTCCGTATTTGTTCTACACGACGAAGTATATTTCAATCAGT
CACATATCAAGGCGACTGCTGTCGATTTTTTCTTTTTTTCACATTTTGTG
TGTTTCGGAGGTGGGGGGGGGGGGCGTGGAGACCGGTGAAAAAAGATTAC
TCAAAAAGAAGAGCGAGTCACTCCATGCTTCGGGCTGCTACAGCAGTACT
GCTGTGGAAACGGGGTACAAGTAGAGGTGGGATCTCCGTAAAAACAGAGT
GAAACCAAGAGCAATCACCACGTTTGTTCCAGGTTTGCATGCGTTGTTCA
GGCGATTTGGCGGGGGGTGGGCCATGTATGGTAGAGGAAACTGCTTCATA
CACCTTTCATCCAACAAGTGGGGAAATTAAAACCATTACCTGTTCAGTAC
CTGGTACAAGTATACACTCGAAGATTGCACCGCAAGTAGAGCCAGCCCCC
ACTTCCTTGACAGGCAACACCTTCTCAACTGCTGCTGCTCATACTAAGTA
AACCCTTGCACCAAATCTGCTGCGAGTATTTGATAGTGTAGATATAGTAC
GCGTGGTGATGAAAACGTCGTCACCTCGCCATAGGATGCCGCTCCAAAAT
TCAGTAAGCGAACAAGTGAAAGACACCCTGTTACCCTGCCATGAGGGTGT
CCAAAACAATATCATCGCCTTCCGTCTCCATTCCCCTCCTCGAAGGCCAA
GTCTGCAACGCATGCTCGTTCGTTCTCCCATCCCTGCCACCTACCGCAGC
AATCGCCGATCCCCCCGCCCCCTCCCCGTTCTTCCCGCCGTGTAATTAAA
TATTAATATTCTATCGAATGGTTGCTTTTACTGCTGCAGCTCCTGCTTGC
GTACCGGTGGTATTTCAACGCTCAAAAGACACGTACGTACAGACAGCTGT
ATATTTTTTTTCTTACATAGTGTATTTGCGAAAAAGCACCAATGCGGCAC
CTTCTGTCACAACAGTCCGTTGAAAACAGTACCAGGTAGTTTTTTTACAC
GCTATCCCGGCGGCACGCATAGTTCATCGCGTGTGATGAGGCCATGTATT
AACGACAGTCGGTATATCATTGGTGGAATAAATCATTATCATAGATGGTC
TCTGATTGGCCAAGCTCTTGTTACCTCCCGAAGATGCCAATGATTTTCTG
GACATCGCCAGCAGACCTACAAAGTTCAAAAGACTTAATTAGGGTCTGTC
TAATCATTGCGGATTTTTGCCGGGAAACAGAGAACCATTCCTGGAAACCT
GAAATCTCCGACAACATGCAGGCGTTCTTCTCGGTTTCCCTGAAATGAGC
ACTGCCCAAAAAATCCCGAAATACTCATTTCAGGGTTCCCGGAAATTTGA
ACCCGCATTTCGGGCAGACGTGCCTCCAAGTTCGGGCACGCCTGCATAGG
TGTTCAGTTCACACGAGCTGTCGTATGCACGCCATCCCCAGGCCACACAA
CCACACAGTGAGTTCACAGGGTCGCCCTGAGGCCATGGCTGATGGGAGGA
AGCGCCTTCGGATGCTTCGCTTGGCGTCTAGAGTTCGGATGCGGCGTGAC
TGCTGTGGGCGGGAAGAAGCTCGGGCTTCAGGATAAAAAACAGAGAAAAG
GCATTTTGAAAACAAATACTCGCCCAATCGTTTAGAACAGAGCGAAACTC
AGTTCATGTTCCCGGGAATGGTTCTCTGTTTCCCGGCAAAAATCCGGAAT
GATTAGACAGGGCCTTACCAGAAAATCGTTTTATCATTATTCGTGTTTGT
ACCTCCCGACGACGCCATTGATGTTCTGAACATCGCCAGCAGACCAAAGG
AGTCGAAAAGGACTACCGTATTCTACACAAGATACCACACCCCGTGTTAA
GCTTTTTGTATTCCGTATAGCTCCACAACCAGGAGGGTGCCACTGCCGAA
AAGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACAGGCTGT
TTGGTGTTCGCACCCTCCTGGTTGTGGAGCAATACGGGAAAAAAACCTAA
CACGGGGTGTGGTATCTTGTGTAGAATACGGTAATTGCCAGAAAATCGTA
GTCATTATTCGGGGGTCTTAATCCGATCGAAGGCTTTCTGAACGATGTGC
CTCGCGCACCATAGAAAGGCGGACAGGCAGGCCAGACCAAAAACTACCGA
AGAAACCATCAGCAGTGCCACAGAACACGATATAGAGGTTTGCCGTTGCA
CCAGGCAAGCCAACGTCAGCACCACACGTGACAGCCCAACGAACAAACAC
AGCAGTTTGCATGATGACCCATTTCATTTTTCACACATCATCACACACGA
CACAGACAGGCAGGTCACAGGTCACGAACACGAAGCCGCCTCTCACAGCC
CATGGCAGACAGACATATGATACAGCAGTCTTGAGTGCATGATGAGCCAA
CACACATACACATACAAATACACCGCACCGTACACACACCGGTCGCCCCG
GTAGACTAGTGGTCCCCTCGTTAACCACTAGATGCAGAAGAACGGGGGTT
CGGTTCCCGGTGAATGTGTTCCTTTGCTACTCTGAAAGCGGCTATGTATG
CTATTAGTGAAAGCAGCTTCGGCTTCGCCGACGAGGGCAGGGACAGCGGA
TTTCTGCTCGCGAGATAAAATCTCACGCATGTACCGCACAAGGAAGGTGG
GAGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGG
CCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTACAATAGTGTGCCAGA
GAATATGGGATGACAATACACAAAACACAGACGGGGTGTCCTCAGGCTGA
GTCTTACCGCAAAATCAATTCCGAGGTTCGAGTCCAAAATTGGAAAAAGA
ATGAAAGTTCCAGAGAACACATGCTGTGATAGCCTGAAATGACCTCCCGC
CTCGCAGCAGACCTCGGATCTTCCCGTTTTTTTTTTAATCCTGAACTTGG
GAAATAGTTAAATAATTTTGCAATTAATCGAATCCCAGCACCGGTCGCCC
CGGTGGTTCAGTTGGTTATCCACGAAACCTTCTGACATTCACGGGTGAGT
TCGAATCCCAGTGCAGTAACACAATCTGGGTTTGCTTCTCACAATGCGCG
TGAAAGTGGAAAGCGATCAATTCGTGAGCAAACAAAATTCGATCGTACCA
TCGACGAGGGAAAGGGATTGCTGTCCCCTTTCTCGCGTTAAAAGCTCAAA
CAAAAAGGCAAGCACCGCAGAGGGAAGTGGAGCAAAAAAAAAACTCCTGT
GTTAACTTTCCCCTGTGTGACCCCAGTTGGAGCGTCGACGTACCCGAAAG
GTGTAGAGTGGCGTTCAATGAAAGGGATGACAACACACACACACAAGTTG
GCGAAAAGGGACACGTTTTGTGCGTACGTGGTCTGCTCGAGCGCTCAAAA
AGCAGACGAACACGCGAAACGGGCTCAAGTACGTCATGCGCGGGGCTGTG
AAGGAAGAAAAGAAAAAAATAGCCAAAAAATAAACACACATACAGCAAGA
CTGCCGAACACCACCACAGATCCAAAGAGAGACTACGCTCTACAATGTGG
GAGCAAGACGATGCCGGCGGTCAAAAACAATAGCACAGCAGGAGCGGCAA
GACACCCTCCGCTCAACAACAGCATTAATTAATTATTTCGCACACCCCCG
CGCCCGCCCCGCTGCTGCATCAACAGCAGCAGCAGGACCAGCAACAATGT
GTGATGTCAACACGAAGGCTGTTCAATGAGGTTGAGCTGACCGCTGAGTG
CTGGTTGTTGGCATTTGATTTCGATTTCTTCAGTTTCCGGATAAGACACT
TGAGCAAACGAAACCAGATCTGGGCTATATTTCCGTCTTTTTTCCAGATT
TGGATTCGAATCTCGGATTTGATTTTGTGTTAGGGCTCAGCCTCAGGGTA
GCTCTTGTCACTTTTTTGACCGCATTCAAAATAAAAAACAAACTTGGATT
TGGATTTTGATTCCGTGTTGGGTCCGATCTGCTGCAGCTTTCGTCTGTCC
AAAATCCAAAGCGGGTGCATAAAAAAACAGCAGCCAAACAGCAGTTACAG
ACAGATGGTGTGTGTGATATGAGCATGCCGTGTCGATTCCAAGACATTTG
CGGGAGCTGTCGTGTCTCAAACGAAGAGCACGATGGTGCCCCACGTCGCC
CTGACTCAGGCGCGTTGGTAGTTCTTTGTTTGGGATCGATAACCGAAAAA
TTCGGCAAGAGATGAGTATGTACGTGTTGCACATCGCCCTTTTTTGGAAG
TAGCGGCTGTGTCAGCTCCGCAAACAGCAGTTGAGCAACAAAGTCCCTGC
ACACTTCTACACACTTAAATGCTGCTCTCTAGACTCTGGTCGGAATTCGC
TCAAACAAAGTGATCTGTATTCTACGTGATACCAGCTTTCTCCGGAGCTA
GCATACATGTTACAGCCGGGGTCTATACGTTGTGTGCTGTGATCAGTTAG
GCAAACATACGTAGTGTGCATGCACCATGTGCTCCCGGAATGCACAGCAA
ACACCTCTCTGTCTCTTATTCTAGGTCTATTCGTTTTTGAGCCGCGTTTT
TGATCTATTGGCGGGAAGGAAAGTGTTTTTTACTTTCCCTCCCGTTTCGG
AAGAAAAAAACTGAAATCCAAAACGTGGTGCGGGCGGATGGATTGTTGAC
CTATCGGTGACATATTCTGAGTTTGATCTTTGCTTTTTGATTTTTGAATA
GGCCCAAAACGCGGGACAAGAGCTACCCTCAGGCTGGGTCTTATTACAAA
ATTAAATCCCAGATTCGAATCCAAATCTGAAAAAAAGAATGAAAGATCCA
AAGAACACATGCTGTGATACGCTAAAATAACCTCCCGCCTCGCAGCAGAC
CTCGGATCGTCTCGTCTCTTTTTATGTGGTCCGATTTCCATCTTGGAATT
CAATTAAATGTTTTTGCATCTAATCAAATCCCAAGTTGGCGAAACGAAAC
ACGTTTTGTGCGTACCTGGTCTACTCGGGCGCTCAAGAAGCAGACGAATA
CGCGAAACAGGCTCAAGTACGTCATGCGCGGGACTTTGTTTACACGCCTT
CACACAGCATTTCCAGCATTTCCGTTAATATGGCTAGAAGGGTTTTTCGG
AAAATCATACTGAAGTACTTCGAAGTATAATAAAACGAAGTAGTGATTTT
CCGACTTTCGTTGACACAGGGCCTAAAAGGGTCTTCACGGCGTGCTGCTG
TCCGTTCCGGCTCTCTGAGTTCTCATCGCGTAAACCGCGGGTCAACAACA
GCAGTACAAGTAGCTGGGGGCAGGAGGTACTGCTTTCGACCACGTATATA
CTAAAGACCCGCAGCGGAGCCAATAGCGACGAGTGCAGGAGTACTGGCAG
TTGTTTGAGTCTCGTTGAGATGCGGACGATTTCTGGACTTCCTGAACAAC
ATTTCGACCTCCGATATCTCGGCTGCAGCAACAGATCTGAGGTGCCAACA
CATAGGCACCGCTACATGATGTTTTTTGCTGATTTCACGCTTTTTCGTAG
CAACCTGCGCTTTCGTATTTGCTTGAGAGCGGGCCTTTAGTAACAAAAAT
AATATCAGTTGGACCAATCCCTCAATACTGCTGTTTTTGATGAAGTAAAG
TCAAAACGAGGTTTGGGAACTGAATTGGTTCACATAAATAGGCACTTATA
ATCACAGCAGTGCGGATAACCTGCTTGCGTATACGTGAAGCAATCCACGT
ACACATGATGACTAACCTGTTATGAGTGGCTCAACAAGACCGTGGTTGGA
AACTGCGTACATTCGATGTCGTTATCCGTGTAGTTTCGCCCGTTCTCTAA
CCCTAATCTTACGAGTTCTCCGAATGTCCTGCTTGCGGCGTGTTGACGTT
TGCCGCCACGTGCATCGTACTTCATACGAATTTTGGACTTCCGACCGAAC
GATTGAAACTGACCTCATCGTCGATGCACTACGGGATCGTGATGAAACTA
TGTTAACATGAAAAACAGGCTTGCGGTGGACACCTTCATCGACGAGCTGT
ACGTGCTCTTCTCTCCGCGAGTTCACCTCCTGGCAGACGTGAAGCCTCTT
GTCGACGCCTCATATCACCAACGCGTGGACGAGCTCTGCGACAAAGTGCA
CAGCGGCGACGAAGCGGCGGTGGGGGGTGTTGGAAAAAGTCACTCCCCCG
CTGCTCTGGGCGCCTTCCCCTCGTCCTCGCAACATACCACCACGAACAGC
ACGAGCAGCTGTAGCAGCAGTTTATTGGCATCGTCTGCGGTGCCGAGTCC
CGGGGGCGGCGGTGATGTCAACGGTAAAACGTGGCCGAACACTATGCTGC
GCGGTGGAAGCGGAAACAACGACGAGGGCACGTTGCCGTCGGTGTCGACG
GCCTCGGTGTCCGCGGCGGCGGCTACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGACGGGAAACGGCACGTCGTCGCCACTCTTGTCCCTCAAGGTCG
GTGCCGCTGGTGGTGGCGGTGGCCGTGGTGTATCGGGAGGTGGAACCGGG
CAGTCAAGCAGCACCAACGACGAGCTGGACGGAGCGCTTTCTCTGAGGTG
AGGTAAATATCGCGGAGGTGTTTTATATTTTCATGGAGAGCGGGGTGGTC
TTTTGCAGGACCGGTCACCCCGTATCATTTTCGTACGCTGCTTTCGCCGT
CGTGCGCTCACACAGACCACCCTAACACCCCTGCCCTCTTTCGACCGCGT
AACCCCCCCTGCGAGCGCCCTCCCCTCCCTCAGGCTTGCAACGCCGAAAG
TGATCGTTTTTACTCCGCAAGAGCTTTTCTTCCACCTTCCGCCATTATTC
CCTCCATGAACCAAGCCATAGCGAGGACCCACGCCGCGCCCATGTCAATT
ACCGCGCGCTCCTGTCCCCGTCCCTCTTTTGTTGCAAACGTTTTAGCTCG
CCCAGTAGTACTCGCGGAGGGGCGACAGTGCTAGGAGACACTACAGACAT
CGAGGAACTCCTGACAGGCGTCGATGAGCCCAACGTGGACACAGTGAGTC
CTCCCGATCCTTGGCATTGTATGAGATACTCGCCCGGCTGATTGATCCGG
TTGATGCGTTGTTCTAATCCCGGGCCGCCGTCAGTCGACCGCTGGTCATG
TGTCGAAGGGACAACAAACTACCCTCACTGGTGTATCATGTCCGCTGTCG
CCCTGCCCGGTTTTCCAAATAGATGGACGAAGATGAACCTAGAAACGTGC
TCCTGTACGGAGATCTTTTCTACAATTTTTTGTTCCGCCCGTCGATCTGA
AAGACGAAAAGGAGGGTAAGATGCCGGTGAACTGAGAGGCCCTCAATGAC
CACTTCCTTTTGTTTTCCGTCCGTCGTATTTTTCGCGTGGGAATCAGGAC
CTTCTTGACTTCATAATGTGCGATGACGACAACCCGTCGGTTCTCGGCTC
CTCCGCAGCGTCTATGGAGCCCCAAGCCCTCAATGCTCACCAACGTAAGC
TCAAGCACCATCACCAGCACCAGTGGTCGTTTTCCACGCCCTCGCCACCT
TTAACCGATCCCCTGATCGCCAAAAGTAACGGCAAACCAACAGCAGCATC
CCCGACTCAGAAGGCAAGGGCGTCCGCAGACTCTCATTCGAGCGCTTCAT
CTTCCGTAGTCTTGACCAACACCGGCACAGCCAACACCAACTCACTGCAG
TGGAGTCGCAATGGGTCGGCCCCGAATCTTGCCGACGTGCCGTGCCGCAT
CCACGCGACGCCGATCGCCGGTTGCCGTAACTGCCGATGGGAGGCATCGT
TGTCGTCATCCGCTCCCGCTGCCCTACACACCGCAACCCGCCGGCGTTGC
GCCGTGGCTATCTCGAAGGGCGGTTCAAAGCAGCAGGCCACCGGGAGGTC
CTCCCCTCCACAAGGGGGTAGCCGTGCCGTCCTCCCGAATCAGGGTGGCC
TCAACAAAGGGGTGCACGGTGGTGGCGGCGGCGGCGGTGGCAAGAACAAC
GTGCTGGATGTCGATGATGGAACGTACCACGGCCCCGGAAAAAGAGTCTG
GGAAAAGATAGGGGGCGCTGGAAGCAGCGGTGGCAGTAGTGGCTTAGTGT
CGCCGGGATCTGGCTCGACGTCGCCCACGTCGTTCTATTTCCCTTCGGCC
GCTGCTGCCGCTGCCGCTGCTTCCTCAGCCTCGGCAACAACACCTGGTGG
TAACAACGGCAGCGGAACCCCGTCGCGCCCGAACGCGAGGAGAAAGATAT
CGACGGACCCACTCCCCACCTTCATCAACGACGATGGCAGCGGCAACACG
GGCGCAGGGGGGGGCGGGATGGCAAGGTGGGATCCGATGCCGTCCTCCAT
GGGAGCCGGCGGGACGCGTTACGGCGGTAACAGCGGTGGTGGCACTCGCC
GGAGAAATCCGTCGCCCCCTGTCAACCGGGACCCCGAATCCGTCGGCACG
AAAAGAAATGCATTCGCCGGGTTGGGGAGTGCCCGCTCTCTGCCTACCGT
GGGGGAAGGTCCGTCCAACAACGGTGATGGCGGCGGCAGCGAGATCCCCG
GAAGGCCGAGGTCGGCAGACGATATGGAGAAGCTGGTGGTGAGCGTGGCC
ACGAGGGGTATGCAGCAGGCCCTGACGTTCGGCCTGCGAAACACCTTCGC
CATGCTGCTTCGCAAGAAGGTGGGAACACATAGGACAGGAATTACGGCAA
GAGCTTGGAGGTTATGTAGTGCTGCCCTGCAGTCTCTGCAGACTTCCTGT
GAAGATTACGCTTATTTTGTGCCACCGTAGAATGGCGACGGGCGAAGGGG
GCGAAGGGGCCAGTAAAGCTTGGGTATGCTGCCGTAGGTAGCACTTGAGG
AGATGGTCAGGTGTCGGGCATCCTCATCGTGGCAGTTTTTCCATTTTGGT
GTTGATCTCTTTTTACGTCGAGGCTTACCATTCGACGACGCCATACGCAG
TGATGGGTCCTATGATCCGTATTGCAACCTCCGCTCCCGCCGGCCCGTCC
GCCCACCCTTGCCCGCTCTTGGCTTGTCACTGTACCTCTCCTGCGTTGTT
GCCCCGTGTCCACCCAAAAAGTGCACACGGCCTAAGTTTCTGTTGACGTA
TCTCGTGCTTCCTTGTCTCGTAACTGCAGGACCAGGAGATCGCTGAGCTC
AAGGAAGAAGGTCTCCGGTGGTCGGCGAATGACACGCGCCTGAGGCAGAT
CAACCAACAGCTCCTCAACGACAACATGAAGCTGAGGGCGGCAGCGTCGG
CGGTGGGGAGCGGTGGCGCCAAGGCCGGCAGCGGGGATTTTGGTGACGGA
TGGGACTCGCGTTCACGTGGCGGCCGGTCGCCGAATACCTCTTGAGTCTT
CTGGCTTTGTTTTCTCGTGAAACAGACACAAACGTCCGGATGATTGTTTT
GTTGTTCAGGCTTTTTGTGTTTCTTGATGTTAGTGGTGCCGTTTGAATAT
GTTTTTTTGTTTTAGAGATTGTTCGGTTCACTGATTGCGCAGCACCAAAC
TACGGCAACAGCAGTACGTTTTCAGGGAGGGTTCGCAGAGGCGAGAACCC
GGTAGCCTTGTTTTTCCCCGTAGTGCCTCGTGCAGTATAAGTGTAGTACA
GACCCAGTGGTACAAGACACAAAAATAAATGTCATAGCCGTCTACAACGG
CACAACGGCAAGACAGCACTTTTATCATAGACGGTAATTTAAAAGGTTCA
GAACTTCACTGTCTGTTCCCGGTCGCGGTGCGTGTCTGCACTGTTGTGGT
GAACGCCGTCCGGAGGAGGAGCTTCGCCACTCGAAGCTTTTCCCTAATTT
CGCCCACCAACCCCCATGACGGCGTTTGGCTAAGAAGCGATGTGCGTCTT
TTTATTTCCTGTGTTGCGCAAGCTCGCCTCATGTTTTCAGGCTGTTTGCC
TGGCTGTTTATCTTATCCGGCCGGCCCGCTTGCTGGCTGGCTATCGATCT
CGTATTTTGTCTAATTTCGTAGCGGGGCCCATTGCTCTTCGGTGGCGTTT
TTCGGTGGCACAACCTTGAATCTCCATGCGTTTGCCCGCTTTGCTTTTTG
TGTTTGGTCTGGTTCCTGCTCACGGCTCTGTCTTTGTACAGCCCTTTGTA
GAGCACAACACGGGTTGACGTGTGCGTAAAAATGTGTCATTTAGTTGTTG
CAGGGGTGGTGTATGGTGGGGGGTAGGTAACTTGTGTTGGTGGTGAGTGG
AGGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig83:50690..62995-

>mRNA_P-littoralis_Contig83.22.2 ID=mRNA_P-littoralis_Contig83.22.2|Name=mRNA_P-littoralis_Contig83.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2292bp|location=Sequence derived from alignment at P-littoralis_Contig83:50690..62995- (Pylaiella littoralis U1_48)
ATGGCGGGCAGGGGCGGGCAAGAGAGCGTGGCTCTCATGAACAACTACCT
CGCGAGAGTAAAGGAGGAGTGCAAGCCGGCGATCTACAGCGCCTTCATCG
GCCTTATGAACGCATATCACGGCAACATGCTTGCGGTGGACACCTTCATC
GACGAGCTGTACGTGCTCTTCTCTCCGCGAGTTCACCTCCTGGCAGACGT
GAAGCCTCTTGTCGACGCCTCATATCACCAACGCGTGGACGAGCTCTGCG
ACAAAGTGCACAGCGGCGACGAAGCGGCGGTGGGGGGTGTTGGAAAAAGT
CACTCCCCCGCTGCTCTGGGCGCCTTCCCCTCGTCCTCGCAACATACCAC
CACGAACAGCACGAGCAGCTGTAGCAGCAGTTTATTGGCATCGTCTGCGG
TGCCGAGTCCCGGGGGCGGCGGTGATGTCAACGGTAAAACGTGGCCGAAC
ACTATGCTGCGCGGTGGAAGCGGAAACAACGACGAGGGCACGTTGCCGTC
GGTGTCGACGGCCTCGGTGTCCGCGGCGGCGGCTACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGACGGGAAACGGCACGTCGTCGCCACTCTTGTCC
CTCAAGGTCGGTGCCGCTGGTGGTGGCGGTGGCCGTGGTGTATCGGGAGG
TGGAACCGGGCAGTCAAGCAGCACCAACGACGAGCTGGACGGAGCGCTTT
CTCTGAGCTCGCCCAGTAGTACTCGCGGAGGGGCGACAGTGCTAGGAGAC
ACTACAGACATCGAGGAACTCCTGACAGGCGTCGATGAGCCCAACGTGGA
CACAGACCTTCTTGACTTCATAATGTGCGATGACGACAACCCGTCGGTTC
TCGGCTCCTCCGCAGCGTCTATGGAGCCCCAAGCCCTCAATGCTCACCAA
CGTAAGCTCAAGCACCATCACCAGCACCAGTGGTCGTTTTCCACGCCCTC
GCCACCTTTAACCGATCCCCTGATCGCCAAAAGTAACGGCAAACCAACAG
CAGCATCCCCGACTCAGAAGGCAAGGGCGTCCGCAGACTCTCATTCGAGC
GCTTCATCTTCCGTAGTCTTGACCAACACCGGCACAGCCAACACCAACTC
ACTGCAGTGGAGTCGCAATGGGTCGGCCCCGAATCTTGCCGACGTGCCGT
GCCGCATCCACGCGACGCCGATCGCCGGTTGCCGTAACTGCCGATGGGAG
GCATCGTTGTCGTCATCCGCTCCCGCTGCCCTACACACCGCAACCCGCCG
GCGTTGCGCCGTGGCTATCTCGAAGGGCGGTTCAAAGCAGCAGGCCACCG
GGAGGTCCTCCCCTCCACAAGGGGGTAGCCGTGCCGTCCTCCCGAATCAG
GGTGGCCTCAACAAAGGGGTGCACGGTGGTGGCGGCGGCGGCGGTGGCAA
GAACAACGTGCTGGATGTCGATGATGGAACGTACCACGGCCCCGGAAAAA
GAGTCTGGGAAAAGATAGGGGGCGCTGGAAGCAGCGGTGGCAGTAGTGGC
TTAGTGTCGCCGGGATCTGGCTCGACGTCGCCCACGTCGTTCTATTTCCC
TTCGGCCGCTGCTGCCGCTGCCGCTGCTTCCTCAGCCTCGGCAACAACAC
CTGGTGGTAACAACGGCAGCGGAACCCCGTCGCGCCCGAACGCGAGGAGA
AAGATATCGACGGACCCACTCCCCACCTTCATCAACGACGATGGCAGCGG
CAACACGGGCGCAGGGGGGGGCGGGATGGCAAGGTGGGATCCGATGCCGT
CCTCCATGGGAGCCGGCGGGACGCGTTACGGCGGTAACAGCGGTGGTGGC
ACTCGCCGGAGAAATCCGTCGCCCCCTGTCAACCGGGACCCCGAATCCGT
CGGCACGAAAAGAAATGCATTCGCCGGGTTGGGGAGTGCCCGCTCTCTGC
CTACCGTGGGGGAAGGTCCGTCCAACAACGGTGATGGCGGCGGCAGCGAG
ATCCCCGGAAGGCCGAGGTCGGCAGACGATATGGAGAAGCTGGTGGTGAG
CGTGGCCACGAGGGGTATGCAGCAGGCCCTGACGTTCGGCCTGCGAAACA
CCTTCGCCATGCTGCTTCGCAAGAAGGACCAGGAGATCGCTGAGCTCAAG
GAAGAAGGTCTCCGGTGGTCGGCGAATGACACGCGCCTGAGGCAGATCAA
CCAACAGCTCCTCAACGACAACATGAAGCTGAGGGCGGCAGCGTCGGCGG
TGGGGAGCGGTGGCGCCAAGGCCGGCAGCGGGGATTTTGGTGACGGATGG
GACTCGCGTTCACGTGGCGGCCGGTCGCCGAATACCTCTTGA
back to top